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SummaryGeometryRelated PDB entries

EB5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAUCATsing1.53Å1.50Å
NASCATsing1.47Å1.48Å
NASSAPsing1.66Å1.80Å
OARSAPdoub1.42Å1.55Å
CAHCAGdoub1.37Å1.41ÅAromatic
CAHCAIsing1.39Å1.43ÅAromatic
CAGCADsing1.41Å1.40ÅAromatic
SAPOAQdoub1.42Å1.57Å
SAPCACsing1.76Å1.84Å
CAICAJdoub1.38Å1.34ÅAromatic
CADCACdoub1.41Å1.43ÅAromatic
CADCAEsing1.40Å1.37ÅAromatic
CACCABsing1.37Å1.41ÅAromatic
CAJCAEsing1.40Å1.35ÅAromatic
CAJCALsing1.47Å1.37Å
CAECAFdoub1.39Å1.35ÅAromatic
CABCAAdoub1.39Å1.42ÅAromatic
CALOAOdoub1.22Å1.23Å
CALNAKsing1.36Å1.34Å
CAFCAAsing1.38Å1.36ÅAromatic
CAFNAKsing1.39Å1.35Å
NAKCAMsing1.47Å1.45Å
CANCAMsing1.53Å1.53Å
CAUH1sing1.09Å1.10Å
CAUH2sing1.09Å1.10Å
CAUH3sing1.09Å1.10Å
CATH4sing1.09Å1.10Å
CATH5sing1.09Å1.10Å
NASH6sing0.97Å1.00Å
CABH7sing1.08Å1.08Å
CAAH8sing1.08Å1.08Å
CAGH9sing1.08Å1.08Å
CAHH10sing1.08Å1.08Å
CAIH11sing1.08Å1.08Å
CAMH12sing1.09Å1.10Å
CAMH13sing1.09Å1.10Å
CANH14sing1.09Å1.10Å
CANH15sing1.09Å1.10Å
CANH16sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAUCATNAS104.9°109.5°
CATCAUH1109.5°109.5°
CATCAUH2109.5°109.5°
CATCAUH3109.5°109.5°
CAUCATH4110.6°109.5°
CAUCATH5110.6°109.5°
CATNASSAP117.1°120.0°
NASCATH4110.6°109.4°
NASCATH5110.6°109.5°
CATNASH6107.5°120.0°
NASSAPOAR106.3°106.4°
NASSAPOAQ116.0°106.4°
NASSAPCAC100.8°107.3°
SAPNASH6107.6°120.1°
OARSAPOAQ114.2°123.1°
OARSAPCAC111.9°106.4°
CAGCAHCAI119.8°123.1°
CAHCAGCAD117.6°118.9°
CAHCAGH9121.2°120.6°
CAGCAHH10120.1°118.4°
CAHCAICAJ120.9°119.8°
CAICAHH10120.1°118.4°
CAHCAIH11119.5°120.1°
CAGCADCAC124.8°125.8°
CAGCADCAE118.3°117.2°
CADCAGH9121.2°120.5°
OAQSAPCAC107.0°106.4°
SAPCACCAD122.9°120.8°
SAPCACCAB117.3°120.8°
CAICAJCAE117.6°116.7°
CAICAJCAL137.2°139.1°
CAJCAIH11119.5°120.1°
CACCADCAE116.9°117.0°
CADCACCAB119.6°118.5°
CADCAECAJ125.8°124.3°
CADCAECAF124.5°125.1°
CACCABCAA119.1°123.3°
CACCABH7120.5°118.4°
CAECAJCAL105.1°104.2°
CAJCAECAF109.7°110.6°
CAJCALOAO126.7°126.0°
CAJCALNAK110.3°108.0°
CAECAFCAA119.8°116.1°
CAECAFNAK107.9°106.9°
CABCAACAF120.1°119.9°
CAACABH7120.5°118.3°
CABCAAH8120.0°120.0°
OAOCALNAK122.5°126.0°
CALNAKCAF107.0°110.3°
CALNAKCAM127.9°124.8°
CAACAFNAK132.3°137.0°
CAFCAAH8120.0°120.0°
CAFNAKCAM124.9°124.8°
NAKCAMCAN111.7°109.5°
NAKCAMH12108.9°109.5°
NAKCAMH13108.9°109.5°
CANCAMH12108.9°109.5°
CANCAMH13108.9°109.5°
CAMCANH14109.5°109.5°
CAMCANH15109.5°109.4°
CAMCANH16109.4°109.5°
H1CAUH2109.4°109.4°
H1CAUH3109.4°109.5°
H2CAUH3109.5°109.5°
H4CATH5109.5°109.5°
H12CAMH13109.5°109.4°
H14CANH15109.4°109.5°
H14CANH16109.5°109.5°
H15CANH16109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAUCATNASH4119.3°120.0°
CAUCATNASH5119.3°120.0°
CAUCATNASSAP168.0°164.5°
CATCAUH1H2120.0°120.0°
CATCAUH1H3120.0°120.0°
CATCAUH2H3120.0°120.1°
CAUCATH4H5122.1°120.0°
CAUCATNASH670.9°15.6°
CATNASSAPH6121.1°179.9°
CATNASSAPOAR170.3°49.2°
CATNASSAPOAQ42.2°177.9°
CATNASSAPCAC72.9°64.4°
NASCATCAUH1180.0°60.1°
NASCATCAUH260.0°180.0°
NASCATCAUH360.0°60.0°
NASCATH4H5122.1°120.1°
NASSAPOAROAQ129.2°122.9°
NASSAPOARCAC109.1°114.2°
NASSAPOAQCAC111.5°114.1°
NASSAPCACCAD61.2°64.0°
NASSAPCACCAB114.4°115.7°
SAPNASCATH448.7°44.6°
SAPNASCATH572.8°75.4°
OARSAPOAQCAC124.4°123.0°
OARSAPCACCAD51.4°177.6°
OARSAPCACCAB133.0°2.1°
OARSAPNASH649.2°130.9°
CAGCAHCAIH10180.0°179.9°
CAHCAGCADH9180.0°180.0°
CAGCAHCAICAJ0.5°0.5°
CAHCAGCADCAC179.9°180.0°
CAHCAGCADCAE1.2°0.2°
CAGCAHCAIH11179.5°179.9°
CAICAHCAGCAD1.7°0.1°
CAHCAICAJH11180.0°179.5°
CAHCAICAJCAE1.1°0.7°
CAHCAICAJCAL176.4°180.0°
CAICAHCAGH9178.3°180.0°
CAGCADCACSAP4.5°0.1°
CAGCADCACCAE178.9°179.8°
CAGCADCACCAB180.0°179.7°
CAGCADCAECAJ0.5°0.0°
CAGCADCAECAF179.0°179.6°
CADCAGCAHH10178.3°180.0°
OAQSAPCACCAD177.1°49.5°
OAQSAPCACCAB7.3°130.8°
OAQSAPNASH678.9°2.0°
SAPCACCADCAB175.5°179.8°
SAPCACCADCAE176.6°179.7°
SAPCACCABCAA176.4°180.0°
CACSAPNASH6166.0°115.5°
SAPCACCABH73.5°0.0°
CAICAJCAECAD1.7°0.4°
CAICAJCAECAL176.6°179.6°
CAICAJCAECAF179.6°179.2°
CAICAJCALOAO6.0°0.1°
CAICAJCALNAK177.7°178.8°
CAJCAICAHH10179.5°179.5°
CACCADCAECAJ178.6°179.9°
CACCADCAECAF0.0°0.6°
CADCACCABCAA0.7°0.2°
CADCACCABH7179.3°179.7°
CACCADCAGH90.2°0.1°
CAECADCACCAB1.1°0.5°
CADCAECAJCAF178.8°179.6°
CADCAECAJCAL178.3°180.0°
CADCAECAFCAA1.4°0.2°
CADCAECAFNAK178.4°179.7°
CAECADCAGH9178.7°179.8°
CACCABCAAH7180.0°180.0°
CACCABCAACAF0.7°0.1°
CACCABCAAH8179.3°180.0°
CAECAJCALOAO169.6°179.3°
CAECAJCALNAK2.0°0.6°
CAJCAECAFCAA179.8°179.9°
CAJCAECAFNAK2.8°0.0°
CAECAJCAIH11178.9°179.7°
CALCAJCAECAF2.9°0.4°
CAJCALOAONAK170.7°178.5°
CAJCALNAKCAF0.4°0.6°
CAJCALNAKCAM175.3°179.8°
CALCAJCAIH113.6°0.4°
CAECAFCAACAB1.7°0.1°
CAECAFNAKCAL1.4°0.3°
CAECAFCAANAK176.2°179.9°
CAECAFNAKCAM173.7°179.9°
CAECAFCAAH8178.2°180.0°
CABCAACAFH8180.0°179.9°
CABCAACAFNAK177.9°180.0°
OAOCALNAKCAF171.7°179.3°
OAOCALNAKCAM3.3°1.1°
CALNAKCAFCAA178.0°179.8°
CALNAKCAFCAM175.1°179.6°
CALNAKCAMCAN88.5°90.4°
CALNAKCAMH12151.2°29.6°
CALNAKCAMH1331.8°149.5°
CAACAFNAKCAM2.8°0.2°
CAFCAACABH7179.3°179.9°
CAFNAKCAMCAN85.6°90.0°
NAKCAFCAAH82.0°0.2°
CAFNAKCAMH1234.7°149.9°
CAFNAKCAMH13154.1°30.0°
NAKCAMCANH12120.3°120.0°
NAKCAMCANH13120.3°120.0°
NAKCAMH12H13119.0°119.9°
NAKCAMCANH14180.0°60.0°
NAKCAMCANH1560.0°60.0°
NAKCAMCANH1660.0°180.0°
CANCAMH12H13119.0°120.0°
CAMCANH14H15120.0°120.0°
CAMCANH14H16120.0°120.0°
CAMCANH15H16120.0°120.0°
H1CAUH2H3119.9°120.0°
H1CAUCATH460.7°180.0°
H1CAUCATH560.7°60.0°
H2CAUCATH459.3°60.0°
H2CAUCATH5179.3°59.9°
H3CAUCATH4179.3°60.0°
H3CAUCATH559.3°180.0°
H4CATNASH6169.8°135.5°
H5CATNASH648.4°104.5°
H7CABCAAH80.7°0.1°
H9CAGCAHH101.7°0.0°
H10CAHCAIH110.5°0.0°
H12CAMCANH1459.7°180.0°
H12CAMCANH15179.7°60.0°
H12CAMCANH1660.4°59.9°
H13CAMCANH1459.7°60.0°
H13CAMCANH1560.3°179.9°
H13CAMCANH16179.7°60.0°
H14CANH15H16120.0°120.0°

222415

PDB entries from 2024-07-10

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