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Summary Geometry Related PDB entries

EAP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	P	doub	1.48Å	1.50Å
O2	P	sing	1.61Å	1.48Å
O2	HO2	sing	0.97Å	0.95Å
O3	P	sing	1.61Å	1.49Å
O3	HO3	sing	0.97Å	0.95Å
O4	P	sing	1.61Å	1.49Å
O4	C1	sing	1.36Å	1.44Å
C1	C2	doub	1.32Å	1.52Å
C1	H11	sing	1.08Å	1.10Å
C2	N3	sing	1.40Å	1.33Å
C2	H21	sing	1.08Å	1.10Å
N3	HN31	sing	0.97Å	1.02Å
N3	HN32	sing	0.97Å	1.02Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	P	O2	108.5°	109.4°
O1	P	O3	109.8°	109.4°
O1	P	O4	108.5°	109.5°
P	O2	HO2	108.5°	106.8°
O2	P	O3	112.7°	109.5°
O2	P	O4	108.6°	109.5°
P	O3	HO3	109.8°	106.8°
O3	P	O4	108.7°	109.5°
P	O4	C1	110.6°	106.8°
O4	C1	C2	110.1°	120.0°
O4	C1	H11	122.8°	120.0°
C2	C1	H11	127.2°	120.0°
C1	C2	N3	109.9°	120.0°
C1	C2	H21	130.5°	120.0°
N3	C2	H21	119.6°	120.0°
C2	N3	HN31	109.8°	120.1°
C2	N3	HN32	112.0°	119.9°
HN31	N3	HN32	112.1°	119.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	P	O2	O3	121.8°	119.9°
O1	P	O2	O4	117.7°	120.0°
O1	P	O2	HO2	180.0°	60.0°
O1	P	O3	O4	118.5°	120.0°
O1	P	O3	HO3	180.0°	180.0°
O1	P	O4	C1	66.5°	60.0°
O2	P	O3	O4	120.4°	120.1°
O2	P	O3	HO3	58.9°	60.1°
O2	P	O4	C1	175.8°	180.0°
HO2	O2	P	O3	58.2°	60.0°
HO2	O2	P	O4	62.3°	180.0°
O3	P	O4	C1	52.9°	60.0°
HO3	O3	P	O4	61.5°	60.0°
P	O4	C1	C2	152.0°	180.0°
P	O4	C1	H11	28.0°	0.0°
O4	C1	C2	H11	180.0°	179.9°
O4	C1	C2	N3	130.2°	179.9°
O4	C1	C2	H21	49.8°	0.0°
C1	C2	N3	H21	180.0°	180.0°
C1	C2	N3	HN31	180.0°	179.9°
C1	C2	N3	HN32	54.7°	0.3°
H11	C1	C2	N3	49.8°	0.0°
H11	C1	C2	H21	130.2°	180.0°
C2	N3	HN31	HN32	125.2°	179.7°
H21	C2	N3	HN31	0.0°	0.1°
H21	C2	N3	HN32	125.3°	179.7°

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PDB entries from 2024-09-11

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