E1X
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.50Å | 1.49Å | |
| P | OP2 | sing | 1.62Å | 1.48Å | |
| P | O5' | sing | 1.62Å | 1.59Å | |
| P | OP3 | sing | 1.62Å | 104.25Å | |
| OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
| O5' | C5' | sing | 1.42Å | 1.42Å | |
| N9 | C4 | sing | 1.36Å | 1.37Å | Aromatic |
| N9 | C8 | sing | 1.37Å | 1.37Å | Aromatic |
| N9 | C1' | sing | 1.46Å | 1.46Å | |
| C4 | N3 | sing | 1.36Å | 1.34Å | |
| C4 | C5 | doub | 1.36Å | 1.38Å | Aromatic |
| N3 | C2 | sing | 1.40Å | 1.34Å | |
| N3 | HN3 | sing | 1.01Å | 1.02Å | |
| C2 | O2 | doub | 1.23Å | 1.36Å | |
| C2 | N1 | sing | 1.44Å | 1.40Å | |
| N1 | C10 | sing | 1.46Å | 1.48Å | |
| N1 | C6 | sing | 1.42Å | 1.41Å | |
| C10 | C11 | sing | 1.49Å | 1.52Å | |
| C10 | H101 | sing | 1.09Å | 1.11Å | |
| C10 | H102 | sing | 1.09Å | 1.12Å | |
| C11 | H111 | sing | 1.10Å | 1.11Å | |
| C11 | H112 | sing | 1.10Å | 1.12Å | |
| C11 | H113 | sing | 1.10Å | 1.11Å | |
| O6 | C6 | doub | 1.23Å | 1.23Å | |
| C6 | C5 | sing | 1.44Å | 1.42Å | |
| C5 | N7 | sing | 1.37Å | 1.39Å | Aromatic |
| N7 | C8 | doub | 1.32Å | 1.31Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.10Å | |
| C2' | C1' | sing | 1.52Å | 1.52Å | |
| C2' | C3' | sing | 1.51Å | 1.52Å | |
| C2' | H2' | sing | 1.10Å | 1.11Å | |
| C2' | H2'' | sing | 1.09Å | 1.12Å | |
| C5' | C4' | sing | 1.52Å | 1.51Å | |
| C5' | H5' | sing | 1.09Å | 1.12Å | |
| C5' | H5'' | sing | 1.09Å | 1.12Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.52Å | 1.52Å | |
| C4' | H4' | sing | 1.10Å | 1.12Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C1' | H1' | sing | 1.10Å | 1.11Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | H1 | sing | 1.09Å | 1.11Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.98Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.8° | 115.3° |
| OP1 | P | O5' | 108.4° | 115.0° |
| OP1 | P | OP3 | 46.1° | 115.0° |
| OP2 | P | O5' | 108.9° | 103.7° |
| OP2 | P | OP3 | 117.8° | 103.3° |
| P | OP2 | HOP2 | 119.7° | 118.9° |
| O5' | P | OP3 | 66.2° | 102.9° |
| P | O5' | C5' | 119.9° | 118.5° |
| P | OP3 | HOP3 | 46.1° | 118.9° |
| O5' | C5' | C4' | 110.6° | 108.7° |
| O5' | C5' | H5' | 111.8° | 109.2° |
| O5' | C5' | H5'' | 111.8° | 109.2° |
| C4 | N9 | C8 | 106.4° | 106.1° |
| C4 | N9 | C1' | 125.1° | 127.8° |
| N9 | C4 | N3 | 132.1° | 127.7° |
| N9 | C4 | C5 | 105.7° | 106.3° |
| C8 | N9 | C1' | 128.4° | 126.1° |
| N9 | C8 | N7 | 113.0° | 112.3° |
| N9 | C8 | H8 | 125.6° | 122.1° |
| N9 | C1' | C2' | 116.7° | 114.3° |
| N9 | C1' | O4' | 108.7° | 110.0° |
| N9 | C1' | H1' | 104.3° | 105.9° |
| N3 | C4 | C5 | 122.1° | 126.0° |
| C4 | N3 | C2 | 121.1° | 118.5° |
| C4 | N3 | HN3 | 108.0° | 120.4° |
| C4 | C5 | C6 | 119.2° | 120.9° |
| C4 | C5 | N7 | 110.6° | 111.1° |
| C2 | N3 | HN3 | 108.1° | 121.2° |
| N3 | C2 | O2 | 119.6° | 120.9° |
| N3 | C2 | N1 | 120.6° | 115.8° |
| O2 | C2 | N1 | 119.8° | 123.3° |
| C2 | N1 | C10 | 118.1° | 116.6° |
| C2 | N1 | C6 | 119.9° | 126.7° |
| C10 | N1 | C6 | 122.1° | 116.7° |
| N1 | C10 | C11 | 113.3° | 111.1° |
| N1 | C10 | H101 | 110.8° | 107.8° |
| N1 | C10 | H102 | 110.8° | 107.7° |
| N1 | C6 | O6 | 117.5° | 126.2° |
| N1 | C6 | C5 | 117.2° | 112.2° |
| C11 | C10 | H101 | 110.9° | 110.5° |
| C11 | C10 | H102 | 110.9° | 110.8° |
| C10 | C11 | H111 | 113.2° | 110.9° |
| C10 | C11 | H112 | 110.8° | 110.9° |
| C10 | C11 | H113 | 110.8° | 109.9° |
| H101 | C10 | H102 | 99.5° | 108.8° |
| H111 | C11 | H112 | 110.8° | 109.2° |
| H111 | C11 | H113 | 110.9° | 107.9° |
| H112 | C11 | H113 | 99.5° | 108.0° |
| O6 | C6 | C5 | 125.4° | 121.7° |
| C6 | C5 | N7 | 130.3° | 128.0° |
| C5 | N7 | C8 | 104.3° | 104.2° |
| N7 | C8 | H8 | 121.4° | 125.7° |
| C1' | C2' | C3' | 101.4° | 101.6° |
| C1' | C2' | H2' | 115.3° | 110.5° |
| C1' | C2' | H2'' | 115.3° | 111.7° |
| C2' | C1' | O4' | 106.9° | 106.7° |
| C2' | C1' | H1' | 106.1° | 111.7° |
| C3' | C2' | H2' | 115.3° | 110.0° |
| C3' | C2' | H2'' | 115.3° | 114.2° |
| C2' | C3' | C4' | 102.4° | 103.2° |
| C2' | C3' | O3' | 111.0° | 108.4° |
| C2' | C3' | H1 | 113.1° | 113.7° |
| H2' | C2' | H2'' | 95.2° | 108.7° |
| C4' | C5' | H5' | 111.8° | 110.1° |
| C4' | C5' | H5'' | 111.8° | 110.1° |
| C5' | C4' | O4' | 109.5° | 108.0° |
| C5' | C4' | C3' | 111.9° | 112.7° |
| C5' | C4' | H4' | 106.6° | 109.4° |
| H5' | C5' | H5'' | 98.5° | 109.6° |
| O4' | C4' | C3' | 105.4° | 106.8° |
| O4' | C4' | H4' | 113.0° | 107.7° |
| C4' | O4' | C1' | 109.8° | 108.7° |
| C3' | C4' | H4' | 110.6° | 112.0° |
| C4' | C3' | O3' | 109.4° | 109.6° |
| C4' | C3' | H1 | 114.6° | 114.0° |
| O4' | C1' | H1' | 114.5° | 108.1° |
| O3' | C3' | H1 | 106.5° | 107.8° |
| C3' | O3' | HO3' | 111.0° | 106.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 125.5° | 126.6° |
| OP1 | P | OP2 | OP3 | 53.0° | 126.3° |
| OP1 | P | O5' | OP3 | 19.0° | 125.8° |
| OP1 | P | OP2 | HOP2 | 180.0° | 48.8° |
| OP1 | P | O5' | C5' | 27.9° | 180.0° |
| OP1 | P | OP3 | HOP3 | 180.0° | 48.0° |
| OP2 | P | O5' | OP3 | 112.8° | 107.4° |
| OP2 | P | O5' | C5' | 159.7° | 53.2° |
| OP2 | P | OP3 | HOP3 | 74.3° | 78.5° |
| O5' | P | OP2 | HOP2 | 54.6° | 175.4° |
| P | O5' | C5' | C4' | 157.3° | 180.0° |
| P | O5' | C5' | H5' | 32.0° | 59.9° |
| P | O5' | C5' | H5'' | 77.4° | 59.9° |
| O5' | P | OP3 | HOP3 | 25.4° | 173.9° |
| OP3 | P | OP2 | HOP2 | 127.0° | 77.5° |
| OP3 | P | O5' | C5' | 46.9° | 54.2° |
| O5' | C5' | C4' | H5' | 125.3° | 119.6° |
| O5' | C5' | C4' | H5'' | 125.3° | 119.5° |
| O5' | C5' | H5' | H5'' | 117.7° | 119.6° |
| O5' | C5' | C4' | O4' | 69.9° | 61.8° |
| O5' | C5' | C4' | C3' | 46.5° | 179.5° |
| O5' | C5' | C4' | H4' | 167.6° | 55.2° |
| C4 | N9 | C8 | C1' | 178.7° | 179.9° |
| N9 | C4 | N3 | C5 | 178.9° | 179.9° |
| N9 | C4 | N3 | C2 | 178.9° | 180.0° |
| N9 | C4 | N3 | HN3 | 55.8° | 0.0° |
| N9 | C4 | C5 | C6 | 179.0° | 180.0° |
| N9 | C4 | C5 | N7 | 1.3° | 0.1° |
| C4 | N9 | C8 | N7 | 1.2° | 0.0° |
| C4 | N9 | C8 | H8 | 178.8° | 179.8° |
| C4 | N9 | C1' | C2' | 124.8° | 93.6° |
| C4 | N9 | C1' | O4' | 114.3° | 146.4° |
| C4 | N9 | C1' | H1' | 8.2° | 29.9° |
| C8 | N9 | C4 | N3 | 179.5° | 179.9° |
| C8 | N9 | C4 | C5 | 1.4° | 0.0° |
| N9 | C8 | N7 | C5 | 0.4° | 0.0° |
| N9 | C8 | N7 | H8 | 180.0° | 179.8° |
| C8 | N9 | C1' | C2' | 53.7° | 86.5° |
| C8 | N9 | C1' | O4' | 67.2° | 33.5° |
| C8 | N9 | C1' | H1' | 170.3° | 150.0° |
| C1' | N9 | C4 | N3 | 1.7° | 0.2° |
| C1' | N9 | C4 | C5 | 177.3° | 179.9° |
| C1' | N9 | C8 | N7 | 177.5° | 179.9° |
| C1' | N9 | C8 | H8 | 2.5° | 0.1° |
| N9 | C1' | C2' | O4' | 121.8° | 121.8° |
| N9 | C1' | C2' | H1' | 115.6° | 120.3° |
| N9 | C1' | C2' | C3' | 153.6° | 154.5° |
| N9 | C1' | C2' | H2' | 81.2° | 37.8° |
| N9 | C1' | C2' | H2'' | 28.3° | 83.3° |
| N9 | C1' | O4' | C4' | 140.1° | 141.8° |
| N9 | C1' | O4' | H1' | 116.1° | 115.2° |
| C4 | N3 | C2 | HN3 | 125.3° | 180.0° |
| C4 | N3 | C2 | O2 | 179.6° | 179.9° |
| C4 | N3 | C2 | N1 | 0.3° | 0.1° |
| N3 | C4 | C5 | C6 | 0.2° | 0.1° |
| N3 | C4 | C5 | N7 | 179.6° | 180.0° |
| C5 | C4 | N3 | C2 | 0.0° | 0.1° |
| C5 | C4 | N3 | HN3 | 125.3° | 179.9° |
| C4 | C5 | C6 | N1 | 0.1° | 0.0° |
| C4 | C5 | C6 | O6 | 179.3° | 179.9° |
| C4 | C5 | C6 | N7 | 179.7° | 179.9° |
| C4 | C5 | N7 | C8 | 0.5° | 0.1° |
| N3 | C2 | O2 | N1 | 179.8° | 179.9° |
| N3 | C2 | N1 | C10 | 179.8° | 180.0° |
| N3 | C2 | N1 | C6 | 0.3° | 0.0° |
| HN3 | N3 | C2 | O2 | 54.3° | 0.0° |
| HN3 | N3 | C2 | N1 | 125.5° | 179.9° |
| O2 | C2 | N1 | C10 | 0.4° | 0.0° |
| O2 | C2 | N1 | C6 | 179.5° | 180.0° |
| C2 | N1 | C10 | C6 | 179.9° | 180.0° |
| C2 | N1 | C10 | C11 | 178.2° | 90.0° |
| C2 | N1 | C10 | H101 | 52.9° | 31.2° |
| C2 | N1 | C10 | H102 | 56.6° | 148.5° |
| C2 | N1 | C6 | O6 | 179.6° | 179.9° |
| C2 | N1 | C6 | C5 | 0.1° | 0.0° |
| N1 | C10 | C11 | H101 | 125.2° | 119.6° |
| N1 | C10 | C11 | H102 | 125.2° | 119.7° |
| N1 | C10 | H101 | H102 | 116.6° | 116.6° |
| N1 | C10 | C11 | H111 | 180.0° | 61.4° |
| N1 | C10 | C11 | H112 | 54.7° | 60.1° |
| N1 | C10 | C11 | H113 | 54.7° | 179.4° |
| C10 | N1 | C6 | O6 | 0.5° | 0.1° |
| C10 | N1 | C6 | C5 | 180.0° | 180.0° |
| C6 | N1 | C10 | C11 | 1.9° | 90.0° |
| C6 | N1 | C10 | H101 | 127.2° | 148.8° |
| C6 | N1 | C10 | H102 | 123.3° | 31.5° |
| N1 | C6 | O6 | C5 | 179.4° | 179.9° |
| N1 | C6 | C5 | N7 | 179.6° | 179.9° |
| C11 | C10 | H101 | H102 | 116.8° | 121.8° |
| C10 | C11 | H111 | H112 | 125.2° | 122.5° |
| C10 | C11 | H111 | H113 | 125.3° | 120.4° |
| C10 | C11 | H112 | H113 | 116.7° | 120.4° |
| H101 | C10 | C11 | H111 | 54.8° | 179.1° |
| H101 | C10 | C11 | H112 | 180.0° | 59.5° |
| H101 | C10 | C11 | H113 | 70.5° | 59.8° |
| H102 | C10 | C11 | H111 | 54.7° | 58.4° |
| H102 | C10 | C11 | H112 | 70.5° | 179.9° |
| H102 | C10 | C11 | H113 | 179.9° | 60.8° |
| H111 | C11 | H112 | H113 | 116.7° | 117.1° |
| O6 | C6 | C5 | N7 | 1.0° | 0.1° |
| C6 | C5 | N7 | C8 | 179.7° | 180.0° |
| C5 | N7 | C8 | H8 | 179.6° | 179.9° |
| C1' | C2' | C3' | H2' | 125.3° | 117.0° |
| C1' | C2' | C3' | H2'' | 125.2° | 120.4° |
| C1' | C2' | H2' | H2'' | 121.2° | 122.9° |
| C2' | C1' | O4' | C4' | 13.3° | 17.3° |
| C1' | C2' | C3' | C4' | 36.9° | 34.8° |
| C2' | C1' | O4' | H1' | 117.2° | 120.3° |
| C1' | C2' | C3' | O3' | 79.7° | 81.3° |
| C1' | C2' | C3' | H1 | 160.7° | 158.8° |
| C3' | C2' | H2' | H2'' | 121.1° | 125.7° |
| C2' | C3' | C4' | C5' | 88.7° | 92.6° |
| C2' | C3' | C4' | O4' | 30.2° | 25.9° |
| C2' | C3' | C4' | O3' | 117.8° | 115.3° |
| C2' | C3' | C4' | H1 | 122.8° | 123.7° |
| C2' | C3' | C4' | H4' | 152.6° | 143.6° |
| C3' | C2' | C1' | O4' | 31.7° | 32.7° |
| C3' | C2' | C1' | H1' | 90.8° | 85.2° |
| C2' | C3' | O3' | H1 | 123.5° | 123.5° |
| C2' | C3' | O3' | HO3' | 180.0° | 151.0° |
| H2' | C2' | C3' | C4' | 162.1° | 82.2° |
| H2' | C2' | C1' | O4' | 157.0° | 84.0° |
| H2' | C2' | C1' | H1' | 34.4° | 158.1° |
| H2' | C2' | C3' | O3' | 45.5° | 161.6° |
| H2' | C2' | C3' | H1 | 74.1° | 41.7° |
| H2'' | C2' | C3' | C4' | 88.4° | 155.2° |
| H2'' | C2' | C1' | O4' | 93.5° | 154.9° |
| H2'' | C2' | C1' | H1' | 143.9° | 37.0° |
| H2'' | C2' | C3' | O3' | 155.0° | 39.1° |
| H2'' | C2' | C3' | H1 | 35.4° | 80.8° |
| C4' | C5' | H5' | H5'' | 117.7° | 121.2° |
| C5' | C4' | O4' | C3' | 120.5° | 121.5° |
| C5' | C4' | O4' | H4' | 118.6° | 118.0° |
| C5' | C4' | C3' | H4' | 118.7° | 123.8° |
| C5' | C4' | O4' | C1' | 109.7° | 116.0° |
| C5' | C4' | C3' | O3' | 153.5° | 152.1° |
| C5' | C4' | C3' | H1 | 34.1° | 31.2° |
| H5' | C5' | C4' | O4' | 164.8° | 57.8° |
| H5' | C5' | C4' | C3' | 78.8° | 60.0° |
| H5' | C5' | C4' | H4' | 42.3° | 174.7° |
| H5'' | C5' | C4' | O4' | 55.4° | 178.7° |
| H5'' | C5' | C4' | C3' | 171.8° | 60.9° |
| H5'' | C5' | C4' | H4' | 67.1° | 64.3° |
| O4' | C4' | C3' | H4' | 122.4° | 117.7° |
| C4' | O4' | C1' | H1' | 103.8° | 103.1° |
| O4' | C4' | C3' | O3' | 87.6° | 89.4° |
| O4' | C4' | C3' | H1 | 153.0° | 149.7° |
| C3' | C4' | O4' | C1' | 10.8° | 5.5° |
| C4' | C3' | O3' | H1 | 124.3° | 124.6° |
| C4' | C3' | O3' | HO3' | 67.8° | 39.0° |
| H4' | C4' | O4' | C1' | 131.7° | 126.0° |
| H4' | C4' | C3' | O3' | 34.8° | 28.3° |
| H4' | C4' | C3' | H1 | 84.6° | 92.6° |
| H1 | C3' | O3' | HO3' | 56.5° | 85.6° |
