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E

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
POP1doub1.48Å1.48Å
POP2sing1.61Å1.48Å
POP3sing1.61Å1.61Å
PO5'sing1.61Å1.61Å
OP2HOP2sing0.97Å0.95Å
OP3HOP3sing0.97Å0.95Å
O5'C5'sing1.43Å1.43Å
C5'C4'sing1.53Å1.53Å
C5'H5'sing1.09Å1.09Å
C5'H5''sing1.09Å1.09Å
C4'O4'sing1.45Å1.44Å
C4'C3'sing1.54Å1.52Å
C4'H4'sing1.09Å1.09Å
O4'C1'sing1.44Å1.44Å
C3'O3'sing1.43Å1.43Å
C3'C2'sing1.55Å1.50Å
C3'H3'sing1.09Å1.09Å
O3'HO3'sing0.97Å0.95Å
C2'C1'sing1.54Å1.51Å
C2'H2'sing1.09Å1.09Å
C2'H2''sing1.09Å1.09Å
C1'N9sing1.47Å1.47Å
C1'H1'sing1.09Å1.08Å
N9C8sing1.36Å1.35ÅAromatic
N9C4sing1.37Å1.37ÅAromatic
C8N7doub1.30Å1.29ÅAromatic
C8H8sing1.08Å1.09Å
N7C5sing1.35Å1.40ÅAromatic
C5C6sing1.40Å1.40ÅAromatic
C5C4doub1.41Å1.38ÅAromatic
C6N6sing1.38Å1.36Å
C6N1doub1.33Å1.38ÅAromatic
N6C10sing1.46Å1.34Å
N6H6sing0.97Å1.01Å
N1C2sing1.32Å1.33ÅAromatic
C2N3doub1.32Å1.32ÅAromatic
C2H2sing1.08Å1.09Å
N3C4sing1.33Å1.35ÅAromatic
C1C2Adoub1.38Å1.40ÅAromatic
C1C12sing1.40Å1.40ÅAromatic
C1H1sing1.08Å1.08Å
C2AC3sing1.38Å1.40ÅAromatic
C2AH2Asing1.08Å1.08Å
C3C3Adoub1.40Å1.40ÅAromatic
C3H3sing1.08Å1.08Å
C3AC4Asing1.42Å1.39ÅAromatic
C3AC13sing1.41Å1.40ÅAromatic
C4AC5Bdoub1.35Å1.41ÅAromatic
C4AH4Asing1.08Å1.08Å
C5BC5Msing1.42Å1.41ÅAromatic
C5BH5Bsing1.08Å1.08Å
C5MC6Bdoub1.39Å1.41ÅAromatic
C5MC14sing1.41Å1.41ÅAromatic
C6BC6Asing1.39Å1.41ÅAromatic
C6BH6Bsing1.08Å1.08Å
C6AC7sing1.51Å1.50Å
C6AC15doub1.38Å1.41ÅAromatic
C7O7sing1.43Å1.43Å
C7C8Asing1.53Å1.52Å
C7H7sing1.09Å1.09Å
O7HO7sing0.97Å0.54Å
C8AO8sing1.43Å1.43Å
C8AC9sing1.53Å1.53Å
C8AH8Asing1.09Å1.09Å
O8HO8sing0.97Å0.95Å
C9O9sing1.43Å1.43Å
C9C10sing1.53Å1.54Å
C9H9sing1.09Å1.09Å
O9HO9sing0.97Å0.81Å
C10C15sing1.51Å1.52Å
C10H10sing1.09Å1.09Å
C11C16sing1.42Å1.41ÅAromatic
C11C17doub1.35Å1.39ÅAromatic
C11H11sing1.08Å1.08Å
C12C13doub1.41Å1.41ÅAromatic
C12C17sing1.42Å1.40ÅAromatic
C13C14sing1.41Å1.41ÅAromatic
C14C16doub1.41Å1.40ÅAromatic
C15C16sing1.40Å1.41ÅAromatic
C17H17sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OP1POP2120.0°109.4°
OP1POP3108.4°109.4°
OP1PO5'108.3°109.4°
OP2POP3108.3°109.5°
OP2PO5'108.2°109.5°
POP2HOP2120.0°106.8°
OP3PO5'102.2°109.5°
POP3HOP3108.4°106.8°
PO5'C5'120.9°106.9°
O5'C5'C4'111.7°109.5°
O5'C5'H5'109.3°109.5°
O5'C5'H5''108.9°109.5°
C4'C5'H5'109.0°109.5°
C4'C5'H5''109.0°109.4°
C5'C4'O4'110.9°110.4°
C5'C4'C3'110.8°110.7°
C5'C4'H4'109.1°110.3°
H5'C5'H5''109.0°109.4°
O4'C4'C3'108.2°104.7°
O4'C4'H4'108.9°110.4°
C4'O4'C1'110.3°105.4°
C3'C4'H4'108.9°110.2°
C4'C3'O3'111.0°110.5°
C4'C3'C2'105.9°104.2°
C4'C3'H3'109.5°110.5°
O4'C1'C2'107.9°104.8°
O4'C1'N9110.9°110.4°
O4'C1'H1'109.7°110.4°
O3'C3'C2'111.1°110.5°
O3'C3'H3'110.1°110.5°
C3'O3'HO3'110.9°106.8°
C2'C3'H3'109.2°110.5°
C3'C2'C1'107.2°104.0°
C3'C2'H2'109.9°110.6°
C3'C2'H2''110.1°110.5°
C1'C2'H2'109.8°110.5°
C1'C2'H2''109.8°110.6°
C2'C1'N9110.2°110.4°
C2'C1'H1'108.9°110.3°
H2'C2'H2''110.0°110.5°
N9C1'H1'109.2°110.3°
C1'N9C8129.1°126.3°
C1'N9C4127.0°126.3°
C8N9C4103.9°107.4°
N9C8N7117.8°110.0°
N9C8H8120.6°125.0°
N9C4C5106.2°106.0°
N9C4N3126.1°134.9°
N7C8H8121.6°125.0°
C8N7C5101.4°109.5°
N7C5C6132.3°134.7°
N7C5C4110.7°107.1°
C6C5C4117.0°118.2°
C5C6N6124.1°120.8°
C5C6N1115.6°118.5°
C5C4N3127.7°119.0°
N6C6N1118.0°120.7°
C6N6C10129.0°120.1°
C6N6H6116.2°120.0°
C6N1C2121.2°121.2°
C10N6H6112.6°119.9°
N6C10C9111.5°109.3°
N6C10C15103.1°109.3°
N6C10H10109.2°109.2°
N1C2N3127.0°122.4°
N1C2H2116.3°118.8°
N3C2H2116.5°118.8°
C2N3C4111.4°120.7°
C2AC1C12120.1°120.0°
C2AC1H1119.9°120.0°
C1C2AC3120.1°121.6°
C1C2AH2A119.9°119.2°
C12C1H1120.0°120.0°
C1C12C13119.8°118.8°
C1C12C17120.3°121.8°
C3C2AH2A120.0°119.2°
C2AC3C3A120.0°120.1°
C2AC3H3120.0°120.0°
C3AC3H3120.0°119.9°
C3C3AC4A119.7°121.8°
C3C3AC13120.1°118.8°
C4AC3AC13120.1°119.4°
C3AC4AC5B120.3°120.9°
C3AC4AH4A119.2°119.5°
C3AC13C12119.9°120.6°
C3AC13C14119.9°119.7°
C5BC4AH4A120.5°119.6°
C4AC5BC5M119.9°120.9°
C4AC5BH5B120.1°119.6°
C5MC5BH5B120.1°119.5°
C5BC5MC6B120.5°122.1°
C5BC5MC14119.6°119.3°
C6BC5MC14119.8°118.6°
C5MC6BC6A120.1°120.9°
C5MC6BH6B120.0°119.6°
C5MC14C13120.2°119.8°
C5MC14C16120.2°120.4°
C6AC6BH6B119.9°119.5°
C6BC6AC7120.1°116.9°
C6BC6AC15119.8°120.9°
C7C6AC15120.0°122.2°
C6AC7O7109.6°109.2°
C6AC7C8A107.9°110.7°
C6AC7H7109.6°109.2°
C6AC15C10123.0°122.7°
C6AC15C16119.7°119.9°
O7C7C8A110.8°109.2°
O7C7H7109.3°109.2°
C7O7HO7123.4°106.8°
C8AC7H7109.6°109.3°
C7C8AO8110.3°109.7°
C7C8AC9110.3°108.3°
C7C8AH8A108.4°109.7°
O8C8AC9110.3°109.7°
O8C8AH8A108.9°109.7°
C8AO8HO8110.3°106.8°
C9C8AH8A108.6°109.7°
C8AC9O9110.0°109.7°
C8AC9C10112.0°108.3°
C8AC9H9108.4°109.7°
O9C9C10109.8°109.7°
O9C9H9108.3°109.7°
C9O9HO9110.3°106.8°
C10C9H9108.4°109.7°
C9C10C15113.8°110.7°
C9C10H10109.7°109.2°
C15C10H10109.2°109.2°
C10C15C16117.3°117.4°
C16C11C17120.6°120.8°
C16C11H11119.9°119.6°
C11C16C14119.9°119.4°
C11C16C15119.7°121.3°
C17C11H11119.5°119.6°
C11C17C12119.8°120.9°
C11C17H17119.5°119.6°
C13C12C17119.9°119.4°
C12C13C14120.2°119.6°
C12C17H17120.7°119.6°
C13C14C16119.6°119.8°
C14C16C15120.4°119.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OP1POP2OP3125.1°119.9°
OP1POP2O5'124.9°120.0°
OP1POP3O5'114.2°120.0°
OP1POP2HOP2180.0°60.0°
OP1POP3HOP3180.0°180.0°
OP1PO5'C5'48.3°60.0°
OP2POP3O5'114.1°120.1°
OP2POP3HOP348.2°60.1°
OP2PO5'C5'179.9°180.0°
OP3POP2HOP254.9°59.9°
OP3PO5'C5'66.0°60.0°
O5'POP2HOP255.1°180.0°
O5'POP3HOP365.8°60.0°
PO5'C5'C4'131.1°180.0°
PO5'C5'H5'10.5°59.9°
PO5'C5'H5''108.4°60.0°
O5'C5'C4'H5'120.8°120.1°
O5'C5'C4'H5''120.4°120.0°
O5'C5'H5'H5''118.9°120.0°
O5'C5'C4'O4'68.2°61.4°
O5'C5'C4'C3'52.0°176.9°
O5'C5'C4'H4'171.9°60.8°
C4'C5'H5'H5''118.9°119.9°
C5'C4'O4'C3'121.8°119.2°
C5'C4'O4'H4'120.1°122.2°
C5'C4'C3'H4'120.0°122.3°
C5'C4'O4'C1'128.2°159.5°
C5'C4'C3'O3'115.3°98.5°
C5'C4'C3'C2'124.1°142.7°
C5'C4'C3'H3'6.5°24.1°
H5'C5'C4'O4'52.6°178.5°
H5'C5'C4'C3'172.7°63.0°
H5'C5'C4'H4'67.4°59.3°
H5''C5'C4'O4'171.4°58.6°
H5''C5'C4'C3'68.4°56.8°
H5''C5'C4'H4'51.5°179.1°
O4'C4'C3'H4'118.2°118.7°
O4'C4'C3'O3'122.9°142.5°
O4'C4'C3'C2'2.3°23.8°
O4'C4'C3'H3'115.3°94.9°
C4'O4'C1'C2'8.0°40.4°
C4'O4'C1'N9128.8°159.3°
C4'O4'C1'H1'110.5°78.4°
C3'C4'O4'C1'6.5°40.3°
C4'C3'O3'C2'117.5°114.8°
C4'C3'O3'H3'121.4°122.6°
C4'C3'C2'H3'117.8°118.7°
C4'C3'O3'HO3'180.0°178.1°
C4'C3'C2'C1'2.4°0.1°
C4'C3'C2'H2'116.9°118.5°
C4'C3'C2'H2''121.8°118.8°
H4'C4'O4'C1'111.7°78.3°
H4'C4'C3'O3'4.8°23.8°
H4'C4'C3'C2'115.9°94.9°
H4'C4'C3'H3'126.5°146.4°
O4'C1'C2'C3'6.3°24.0°
O4'C1'C2'N9121.2°118.9°
O4'C1'C2'H1'119.0°118.9°
O4'C1'C2'H2'113.0°94.7°
O4'C1'C2'H2''125.9°142.7°
O4'C1'N9H1'121.0°122.3°
O4'C1'N9C846.3°25.5°
O4'C1'N9C4136.1°154.8°
O3'C3'C2'H3'121.6°122.6°
O3'C3'C2'C1'118.1°118.7°
O3'C3'C2'H2'122.6°122.7°
O3'C3'C2'H2''1.3°0.0°
C2'C3'O3'HO3'62.5°63.3°
C3'C2'C1'H2'119.4°118.7°
C3'C2'C1'H2''119.6°118.7°
C3'C2'H2'H2''121.4°122.7°
C3'C2'C1'N9127.5°142.9°
C3'C2'C1'H1'112.7°94.9°
H3'C3'O3'HO3'58.6°59.3°
H3'C3'C2'C1'120.3°118.8°
H3'C3'C2'H2'1.0°0.2°
H3'C3'C2'H2''120.4°122.6°
C1'C2'H2'H2''120.9°122.7°
C2'C1'N9H1'119.6°122.2°
C2'C1'N9C873.1°90.0°
C2'C1'N9C4104.5°89.7°
H2'C2'C1'N98.2°24.3°
H2'C2'C1'H1'128.0°146.5°
H2''C2'C1'N9112.9°98.4°
H2''C2'C1'H1'6.9°23.8°
C1'N9C8C4178.0°179.7°
C1'N9C8N7178.3°180.0°
C1'N9C8H81.0°0.1°
C1'N9C4C5178.2°179.9°
C1'N9C4N31.6°0.8°
H1'C1'N9C8167.3°147.8°
H1'C1'N9C415.1°32.5°
N9C8N7H8177.3°179.9°
N9C8N7C50.3°0.0°
C8N9C4C50.2°0.4°
C8N9C4N3179.7°179.5°
C4N9C8N70.3°0.3°
C4N9C8H8177.0°179.8°
N9C4C5N70.0°0.4°
N9C4C5C6179.3°179.9°
N9C4C5N3179.9°179.3°
N9C4N3C2179.2°179.6°
C8N7C5C6179.0°179.9°
C8N7C5C40.1°0.3°
H8C8N7C5177.0°179.9°
N7C5C6C4179.1°179.6°
N7C5C6N619.0°0.1°
N7C5C6N1178.6°179.9°
N7C5C4N3179.8°179.7°
C5C6N6N1162.1°179.9°
C5C6N6C1021.2°180.0°
C5C6N6H6176.9°0.1°
C5C6N1C21.5°0.1°
C6C5C4N30.6°0.6°
C4C5C6N6162.0°179.7°
C4C5C6N10.5°0.3°
C5C4N3C20.6°0.6°
C6N6C10H6162.4°180.0°
N6C6N1C2162.1°180.0°
C6N6C10C997.1°89.4°
C6N6C10C15140.3°149.4°
C6N6C10H1024.3°30.0°
N1C6N6C10140.9°0.0°
N1C6N6H621.0°180.0°
C6N1C2N31.6°0.0°
C6N1C2H2174.5°180.0°
N6C10C15C6A124.6°138.0°
N6C10C9C8A90.6°171.3°
N6C10C9O9147.0°68.9°
N6C10C9C15116.2°120.4°
N6C10C9H10121.1°119.4°
N6C10C9H928.9°51.6°
N6C10C15H10116.1°119.4°
N6C10C15C1653.3°42.3°
H6N6C10C9100.5°90.7°
H6N6C10C1522.0°30.6°
H6N6C10H10138.1°150.0°
N1C2N3H2176.2°180.0°
N1C2N3C40.5°0.3°
H2C2N3C4175.6°179.7°
C2AC1C12H1180.0°180.0°
C1C2AC3H2A179.8°179.9°
C1C2AC3C3A0.1°0.1°
C1C2AC3H3179.7°179.9°
C2AC1C12C130.0°0.0°
C2AC1C12C17179.3°180.0°
C12C1C2AC3NaN°0.0°
C12C1C2AH2A179.8°179.9°
C1C12C13C3A0.0°0.1°
C1C12C17C11178.4°179.9°
C1C12C13C17179.3°180.0°
C1C12C13C14179.2°179.9°
C1C12C17H171.8°0.1°
H1C1C2AC3180.0°180.0°
H1C1C2AH2A0.2°0.1°
H1C1C12C13179.9°180.0°
H1C1C12C170.7°0.0°
C2AC3C3AH3179.7°179.9°
C2AC3C3AC4A179.6°180.0°
C2AC3C3AC130.1°0.1°
H2AC2AC3C3A179.9°179.9°
H2AC2AC3H30.4°0.0°
C3C3AC4AC13179.7°179.8°
C3C3AC4AC5B179.6°180.0°
C3C3AC4AH4A0.1°0.1°
C3C3AC13C120.0°0.2°
C3C3AC13C14179.2°180.0°
H3C3C3AC4A0.1°0.1°
H3C3C3AC13179.8°180.0°
C3AC4AC5BH4A179.7°179.9°
C3AC4AC5BC5M0.3°0.0°
C3AC4AC5BH5B179.9°180.0°
C4AC3AC13C12179.7°180.0°
C4AC3AC13C140.5°0.2°
C13C3AC4AC5B0.1°0.1°
C13C3AC4AH4A179.8°179.9°
C3AC13C14C5M0.4°0.1°
C3AC13C12C14179.2°179.8°
C3AC13C12C17179.3°179.9°
C3AC13C14C16178.2°179.9°
C4AC5BC5MH5B179.8°180.0°
C4AC5BC5MC6B177.8°179.9°
C4AC5BC5MC140.4°0.0°
H4AC4AC5BC5M179.4°179.9°
H4AC4AC5BH5B0.4°0.0°
C5BC5MC6BC14178.2°180.0°
C5BC5MC6BC6A178.0°180.0°
C5BC5MC6BH6B1.8°0.1°
C5BC5MC14C130.0°0.0°
C5BC5MC14C16178.7°180.0°
H5BC5BC5MC6B1.9°0.0°
H5BC5BC5MC14179.8°180.0°
C5MC6BC6AH6B179.8°179.9°
C5MC6BC6AC7178.2°179.7°
C5MC6BC6AC150.2°0.1°
C6BC5MC14C13178.2°180.0°
C6BC5MC14C160.4°0.1°
C14C5MC6BC6A0.2°0.0°
C14C5MC6BH6B180.0°179.9°
C5MC14C16C11179.9°180.0°
C5MC14C13C12179.6°180.0°
C5MC14C13C16178.6°180.0°
C5MC14C16C151.1°0.2°
C6BC6AC7C15178.4°179.9°
C6BC6AC7O723.8°77.6°
C6BC6AC7C8A144.5°162.1°
C6BC6AC7H796.1°41.7°
C6BC6AC15C10177.4°179.5°
C6BC6AC15C160.5°0.3°
H6BC6BC6AC71.6°0.2°
H6BC6BC6AC15180.0°180.0°
C6AC7O7C8A118.9°121.2°
C6AC7O7H7120.2°119.4°
C6AC7C8AH7119.3°120.3°
C6AC7O7HO7131.0°58.8°
C6AC7C8AO8174.7°68.3°
C6AC7C8AC963.2°51.4°
C6AC7C8AH8A55.6°171.2°
C7C6AC15C101.0°0.7°
C7C6AC15C16178.8°179.6°
C15C6AC7O7154.6°102.3°
C15C6AC7C8A33.9°18.0°
C15C6AC7H785.5°138.4°
C6AC15C10C93.7°17.6°
C6AC15C10C16177.9°179.7°
C6AC15C10H10119.3°102.6°
C6AC15C16C11179.9°179.9°
C6AC15C16C141.1°0.3°
O7C7C8AH7120.7°119.4°
O7C7C8AO854.7°171.4°
O7C7C8AC9176.8°68.8°
O7C7C8AH8A64.4°50.9°
C8AC7O7HO7110.0°180.0°
C7C8AO8C9122.1°118.9°
C7C8AO8H8A118.8°120.5°
C7C8AC9H8A118.7°119.7°
C7C8AO8HO8180.0°61.1°
C7C8AC9O961.9°170.4°
C7C8AC9C1060.4°69.9°
C7C8AC9H9179.9°49.8°
H7C7O7HO710.9°60.6°
H7C7C8AO866.0°52.0°
H7C7C8AC956.1°171.8°
H7C7C8AH8A174.9°68.5°
O8C8AC9H8A119.3°120.5°
O8C8AC9O960.2°69.9°
O8C8AC9C10177.6°49.8°
O8C8AC9H958.0°169.5°
C9C8AO8HO858.0°180.0°
C8AC9O9C10123.6°118.9°
C8AC9O9H9118.3°120.6°
C8AC9C10H9119.5°119.7°
C8AC9O9HO9147.4°61.1°
C8AC9C10C1525.5°50.9°
C8AC9C10H10148.2°69.3°
H8AC8AO8HO861.2°59.4°
H8AC8AC9O9179.4°50.6°
H8AC8AC9C1058.3°170.4°
H8AC8AC9H961.2°69.9°
O9C9C10H9118.0°120.5°
O9C9C10C1596.9°170.7°
O9C9C10H1025.8°50.5°
C10C9O9HO989.0°180.0°
C9C10C15H10123.0°120.2°
C9C10C15C16174.2°162.7°
H9C9O9HO929.1°59.4°
H9C9C10C15145.1°68.8°
H9C9C10H1092.2°171.0°
C10C15C16C111.9°0.4°
C10C15C16C14176.8°179.4°
H10C10C15C1662.8°77.1°
C16C11C17H11178.7°180.0°
C16C11C17C120.5°0.0°
C11C16C14C131.2°0.1°
C11C16C14C15178.7°179.8°
C16C11C17H17179.3°179.9°
C11C17C12C130.8°0.1°
C11C17C12H17179.8°179.9°
C17C11C16C140.5°0.0°
C17C11C16C15178.3°179.8°
H11C11C17C12179.3°179.9°
H11C11C16C14178.2°179.9°
H11C11C16C153.0°0.1°
H11C11C17H170.5°0.1°
C12C13C14C160.9°0.1°
C13C12C17H17179.0°179.9°
C17C12C13C140.1°0.1°
C13C14C16C15177.5°179.9°

218853

PDB entries from 2024-04-24

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