DZ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP2 | P | doub | 1.48Å | 1.48Å | |
| ON1 | N | sing | 1.22Å | 1.22Å | |
| OP1 | P | sing | 1.61Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| N | ON2 | doub | 1.22Å | 1.23Å | |
| N | C5 | sing | 1.48Å | 1.49Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.54Å | 1.54Å | |
| C2' | C1' | sing | 1.55Å | 1.52Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C6 | C5 | sing | 1.39Å | 1.41Å | |
| C6 | C1 | doub | 1.38Å | 1.41Å | |
| C5 | C4 | doub | 1.38Å | 1.41Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C1' | C1 | sing | 1.51Å | 1.51Å | |
| C1' | O4' | sing | 1.44Å | 1.41Å | |
| C1 | C2 | sing | 1.40Å | 1.41Å | |
| C4 | N4 | sing | 1.38Å | 1.32Å | |
| C4 | N3 | sing | 1.36Å | 1.32Å | |
| N3 | C2 | sing | 1.35Å | 1.35Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| P | OP3 | sing | 1.61Å | 1.62Å | |
| OP1 | H1 | sing | 0.97Å | 0.95Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| N4 | H42 | sing | 0.97Å | 1.00Å | |
| N4 | H41 | sing | 0.97Å | 1.00Å | |
| C2' | H2'' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | H2 | sing | 0.97Å | 0.95Å | |
| OP3 | H4 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP2 | P | OP1 | 118.8° | 109.5° |
| OP2 | P | O5' | 108.2° | 109.4° |
| OP2 | P | OP3 | 109.5° | 109.5° |
| ON1 | N | ON2 | 122.6° | 120.0° |
| ON1 | N | C5 | 117.6° | 120.0° |
| OP1 | P | O5' | 108.2° | 109.4° |
| OP1 | P | OP3 | 108.2° | 109.5° |
| P | OP1 | H1 | 109.5° | 114.0° |
| P | O5' | C5' | 119.4° | 123.0° |
| O5' | P | OP3 | 102.6° | 109.5° |
| O5' | C5' | C4' | 112.0° | 109.5° |
| O5' | C5' | H5'' | 108.8° | 109.5° |
| O5' | C5' | H5' | 108.8° | 109.5° |
| ON2 | N | C5 | 119.7° | 120.0° |
| N | C5 | C6 | 119.8° | 120.2° |
| N | C5 | C4 | 124.3° | 120.2° |
| C2' | C3' | O3' | 113.7° | 110.5° |
| C2' | C3' | C4' | 102.5° | 104.2° |
| C3' | C2' | C1' | 105.1° | 102.1° |
| C3' | C2' | H2'' | 110.6° | 110.9° |
| C3' | C2' | H2' | 110.6° | 110.9° |
| C2' | C3' | H3' | 109.8° | 110.5° |
| O3' | C3' | C4' | 109.3° | 110.5° |
| O3' | C3' | H3' | 111.3° | 110.4° |
| C3' | O3' | H2 | 109.5° | 114.0° |
| C3' | C4' | C5' | 113.5° | 109.9° |
| C3' | C4' | O4' | 108.3° | 107.3° |
| C3' | C4' | H4' | 107.4° | 110.0° |
| C4' | C3' | H3' | 109.7° | 110.6° |
| C2' | C1' | C1 | 114.9° | 110.6° |
| C2' | C1' | O4' | 104.8° | 103.5° |
| C2' | C1' | H1' | 109.1° | 110.8° |
| C1' | C2' | H2'' | 110.6° | 110.9° |
| C1' | C2' | H2' | 110.6° | 110.9° |
| C5' | C4' | O4' | 111.3° | 109.9° |
| C4' | C5' | H5'' | 108.8° | 109.5° |
| C4' | C5' | H5' | 108.8° | 109.5° |
| C5' | C4' | H4' | 107.4° | 109.9° |
| C5 | C6 | C1 | 120.5° | 119.3° |
| C6 | C5 | C4 | 115.8° | 119.6° |
| C5 | C6 | H6 | 119.7° | 120.4° |
| C6 | C1 | C1' | 119.6° | 120.2° |
| C6 | C1 | C2 | 120.3° | 119.5° |
| C1 | C6 | H6 | 119.8° | 120.3° |
| C5 | C4 | N4 | 122.4° | 119.8° |
| C5 | C4 | N3 | 121.9° | 120.4° |
| C4' | O4' | C1' | 107.5° | 107.0° |
| O4' | C4' | H4' | 108.8° | 109.9° |
| C1 | C1' | O4' | 108.2° | 110.6° |
| C1' | C1 | C2 | 120.1° | 120.3° |
| C1 | C1' | H1' | 109.2° | 110.6° |
| O4' | C1' | H1' | 110.6° | 110.6° |
| C1 | C2 | N3 | 116.7° | 120.4° |
| C1 | C2 | O2 | 124.1° | 119.8° |
| N4 | C4 | N3 | 115.7° | 119.8° |
| C4 | N4 | H42 | 109.5° | 120.0° |
| C4 | N4 | H41 | 109.4° | 120.0° |
| C4 | N3 | C2 | 124.8° | 120.8° |
| C4 | N3 | H3 | 117.6° | 119.5° |
| N3 | C2 | O2 | 119.2° | 119.9° |
| C2 | N3 | H3 | 117.6° | 119.7° |
| P | OP3 | H4 | 109.5° | 114.0° |
| H5'' | C5' | H5' | 109.5° | 109.4° |
| H42 | N4 | H41 | 109.4° | 120.0° |
| H2'' | C2' | H2' | 109.5° | 110.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP2 | P | OP1 | O5' | 123.8° | 120.0° |
| OP2 | P | OP1 | OP3 | 125.7° | 120.0° |
| OP2 | P | O5' | OP3 | 115.8° | 120.0° |
| OP2 | P | O5' | C5' | 177.5° | 55.0° |
| OP2 | P | OP1 | H1 | 0.0° | 180.0° |
| OP2 | P | OP3 | H4 | 0.0° | 60.0° |
| ON1 | N | ON2 | C5 | 175.8° | 179.9° |
| ON1 | N | C5 | C6 | 17.6° | 6.3° |
| ON1 | N | C5 | C4 | 162.0° | 174.1° |
| OP1 | P | O5' | OP3 | 114.2° | 120.0° |
| OP1 | P | O5' | C5' | 52.5° | 65.0° |
| OP1 | P | OP3 | H4 | 131.0° | 60.0° |
| P | O5' | C5' | C4' | 162.5° | 180.0° |
| O5' | P | OP1 | H1 | 123.8° | 60.0° |
| P | O5' | C5' | H5'' | 77.1° | 60.0° |
| P | O5' | C5' | H5' | 42.1° | 60.0° |
| O5' | P | OP3 | H4 | 114.8° | 180.0° |
| O5' | C5' | C4' | C3' | 68.0° | 175.7° |
| O5' | C5' | C4' | H5'' | 120.4° | 120.1° |
| O5' | C5' | C4' | H5' | 120.4° | 120.0° |
| O5' | C5' | C4' | O4' | 54.4° | 66.5° |
| C5' | O5' | P | OP3 | 61.7° | 175.0° |
| O5' | C5' | H5'' | H5' | 118.8° | 120.0° |
| O5' | C5' | C4' | H4' | 173.5° | 54.5° |
| ON2 | N | C5 | C6 | 158.4° | 173.8° |
| ON2 | N | C5 | C4 | 22.0° | 5.8° |
| N | C5 | C6 | C4 | 179.7° | 179.6° |
| N | C5 | C6 | C1 | 179.0° | 179.7° |
| N | C5 | C4 | N4 | 0.4° | 0.0° |
| N | C5 | C4 | N3 | 179.6° | 180.0° |
| N | C5 | C6 | H6 | 1.0° | 0.3° |
| C2' | C3' | O3' | C4' | 113.9° | 114.8° |
| C2' | C3' | O3' | H3' | 124.7° | 122.6° |
| C2' | C3' | C4' | H3' | 116.6° | 118.7° |
| C3' | C2' | C1' | H2'' | 119.3° | 118.2° |
| C3' | C2' | C1' | H2' | 119.3° | 118.2° |
| C2' | C3' | C4' | C5' | 131.3° | 121.4° |
| C2' | C3' | C4' | O4' | 7.2° | 2.0° |
| C3' | C2' | C1' | C1 | 148.6° | 155.5° |
| C3' | C2' | C1' | O4' | 30.1° | 37.0° |
| C2' | C3' | C4' | H4' | 110.2° | 117.4° |
| C3' | C2' | C1' | H1' | 88.4° | 81.5° |
| C3' | C2' | H2'' | H2' | 122.0° | 123.7° |
| C2' | C3' | O3' | H2 | 180.0° | 61.4° |
| O3' | C3' | C4' | H3' | 122.4° | 122.6° |
| O3' | C3' | C2' | C1' | 104.5° | 97.8° |
| O3' | C3' | C4' | C5' | 107.7° | 119.9° |
| O3' | C3' | C4' | O4' | 128.2° | 120.7° |
| O3' | C3' | C4' | H4' | 10.8° | 1.3° |
| O3' | C3' | C2' | H2'' | 136.2° | 20.4° |
| O3' | C3' | C2' | H2' | 14.8° | 144.0° |
| C4' | C3' | C2' | C1' | 13.5° | 20.9° |
| C3' | C4' | C5' | O4' | 122.5° | 117.8° |
| C3' | C4' | C5' | H4' | 118.5° | 121.2° |
| C3' | C4' | O4' | H4' | 116.4° | 119.5° |
| C3' | C4' | O4' | C1' | 27.2° | 26.5° |
| C3' | C4' | C5' | H5'' | 52.4° | 64.2° |
| C3' | C4' | C5' | H5' | 171.6° | 55.7° |
| C4' | C3' | C2' | H2'' | 105.8° | 139.1° |
| C4' | C3' | C2' | H2' | 132.8° | 97.3° |
| C4' | C3' | O3' | H2 | 66.1° | 176.2° |
| C2' | C1' | C1 | C6 | 68.4° | 119.2° |
| C2' | C1' | O4' | C4' | 35.5° | 40.1° |
| C2' | C1' | C1 | O4' | 116.6° | 114.0° |
| C2' | C1' | C1 | H1' | 122.9° | 123.1° |
| C2' | C1' | O4' | H1' | 117.4° | 118.7° |
| C2' | C1' | C1 | C2 | 112.3° | 60.5° |
| C1' | C2' | H2'' | H2' | 122.0° | 123.7° |
| C1' | C2' | C3' | H3' | 130.0° | 139.7° |
| C5' | C4' | O4' | H4' | 118.2° | 121.0° |
| C5' | C4' | O4' | C1' | 152.6° | 146.0° |
| C4' | C5' | H5'' | H5' | 118.9° | 119.9° |
| C5' | C4' | C3' | H3' | 14.7° | 2.7° |
| C5 | C6 | C1 | H6 | 180.0° | 179.4° |
| C5 | C6 | C1 | C1' | 177.3° | 179.7° |
| C5 | C6 | C1 | C2 | 2.0° | 0.6° |
| C6 | C5 | C4 | N4 | 180.0° | 179.6° |
| C6 | C5 | C4 | N3 | 0.0° | 0.3° |
| C1 | C6 | C5 | C4 | 1.3° | 0.6° |
| C6 | C1 | C1' | C2 | 179.3° | 179.7° |
| C6 | C1 | C1' | O4' | 48.3° | 126.8° |
| C6 | C1 | C2 | N3 | 1.3° | 0.3° |
| C6 | C1 | C2 | O2 | 178.6° | 179.7° |
| C6 | C1 | C1' | H1' | 168.7° | 3.9° |
| C5 | C4 | N4 | N3 | 180.0° | 180.0° |
| C5 | C4 | N3 | C2 | 0.8° | 0.0° |
| C5 | C4 | N3 | H3 | 179.3° | 180.0° |
| C4 | C5 | C6 | H6 | 178.7° | 180.0° |
| C5 | C4 | N4 | H42 | 180.0° | 174.4° |
| C5 | C4 | N4 | H41 | 60.0° | 5.5° |
| C4' | O4' | C1' | C1 | 158.5° | 158.5° |
| O4' | C4' | C5' | H5'' | 174.8° | 53.6° |
| O4' | C4' | C5' | H5' | 65.9° | 173.5° |
| C4' | O4' | C1' | H1' | 81.9° | 78.6° |
| O4' | C4' | C3' | H3' | 109.4° | 116.7° |
| C1 | C1' | O4' | H1' | 119.6° | 122.9° |
| C1' | C1 | C2 | N3 | 178.0° | 180.0° |
| C1' | C1 | C2 | O2 | 2.1° | 0.1° |
| C1' | C1 | C6 | H6 | 2.7° | 0.3° |
| C1 | C1' | C2' | H2'' | 29.3° | 86.3° |
| C1 | C1' | C2' | H2' | 92.1° | 37.3° |
| O4' | C1' | C1 | C2 | 131.0° | 53.5° |
| C1' | O4' | C4' | H4' | 89.2° | 93.0° |
| O4' | C1' | C2' | H2'' | 89.3° | 155.2° |
| O4' | C1' | C2' | H2' | 149.4° | 81.2° |
| C1 | C2 | N3 | C4 | 0.1° | 0.0° |
| C1 | C2 | N3 | O2 | 179.9° | 180.0° |
| C2 | C1 | C1' | H1' | 10.6° | 176.4° |
| C1 | C2 | N3 | H3 | 179.9° | 180.0° |
| C2 | C1 | C6 | H6 | 178.0° | 180.0° |
| N4 | C4 | N3 | C2 | 179.2° | 180.0° |
| N4 | C4 | N3 | H3 | 0.8° | 0.1° |
| C4 | N4 | H42 | H41 | 120.0° | 179.9° |
| C4 | N3 | C2 | H3 | 180.0° | 180.0° |
| C4 | N3 | C2 | O2 | 180.0° | 179.9° |
| N3 | C4 | N4 | H42 | 0.0° | 5.7° |
| N3 | C4 | N4 | H41 | 120.0° | 174.4° |
| O2 | C2 | N3 | H3 | 0.0° | 0.0° |
| OP3 | P | OP1 | H1 | 125.7° | 59.9° |
| H5'' | C5' | C4' | H4' | 66.1° | 174.6° |
| H5' | C5' | C4' | H4' | 53.1° | 65.5° |
| H4' | C4' | C3' | H3' | 133.2° | 123.8° |
| H1' | C1' | C2' | H2'' | 152.3° | 36.6° |
| H1' | C1' | C2' | H2' | 30.9° | 160.2° |
| H2'' | C2' | C3' | H3' | 10.7° | 102.1° |
| H2' | C2' | C3' | H3' | 110.7° | 21.5° |
| H3' | C3' | O3' | H2 | 55.3° | 61.1° |
