Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

DYV

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C15O1sing1.43Å1.44Å
O1C14sing1.36Å1.38Å
O2C16sing1.36Å1.37Å
C14C16doub1.39Å1.42ÅAromatic
C14C13sing1.39Å1.44ÅAromatic
C16C10sing1.40Å1.42ÅAromatic
C13C12doub1.38Å1.42ÅAromatic
C10C9sing1.48Å1.46Å
C10C11doub1.40Å1.43ÅAromatic
C12C11sing1.38Å1.42ÅAromatic
N3C9doub1.31Å1.34ÅAromatic
N3N4sing1.29Å1.38ÅAromatic
C9N2sing1.37Å1.36ÅAromatic
N2C4sing1.39Å1.44Å
N2C8sing1.37Å1.34ÅAromatic
C3C2doub1.38Å1.41ÅAromatic
C3C4sing1.39Å1.43ÅAromatic
N4C8doub1.32Å1.33ÅAromatic
C2C1sing1.39Å1.41ÅAromatic
C4C5doub1.41Å1.43ÅAromatic
C8N1sing1.38Å1.43Å
C1C6doub1.38Å1.41ÅAromatic
C5C6sing1.39Å1.42ÅAromatic
C5C7sing1.47Å1.52Å
N1C17sing1.47Å1.47Å
N1C7sing1.35Å1.36Å
C17C18sing1.51Å1.53Å
C7O6doub1.22Å1.24Å
CL1C23sing1.74Å1.73Å
C18C23doub1.38Å1.42ÅAromatic
C18C19sing1.38Å1.43ÅAromatic
C23C22sing1.38Å1.42ÅAromatic
C19C20doub1.38Å1.41ÅAromatic
C22C21doub1.40Å1.43ÅAromatic
C20C21sing1.40Å1.42ÅAromatic
C21C24sing1.48Å1.52Å
C24O3doub1.22Å1.24Å
C24N5sing1.35Å1.37Å
N5C28sing1.47Å1.48Å
N5C25sing1.47Å1.47Å
O5C29doub1.21Å1.35Å
C29C28sing1.51Å1.54Å
C29O4sing1.34Å1.23Å
C28C27sing1.54Å1.55Å
C25C26sing1.55Å1.53Å
C27C26sing1.55Å1.53Å
C2H1sing1.08Å1.08Å
C3H2sing1.08Å1.08Å
C6H3sing1.08Å1.08Å
C11H4sing1.08Å1.08Å
C12H5sing1.08Å1.08Å
C13H6sing1.08Å1.08Å
C17H7sing1.09Å1.10Å
C17H8sing1.09Å1.10Å
C19H9sing1.08Å1.08Å
C20H10sing1.08Å1.08Å
C22H11sing1.08Å1.08Å
C25H12sing1.09Å1.10Å
C25H13sing1.09Å1.10Å
C26H14sing1.09Å1.10Å
C26H15sing1.09Å1.10Å
C27H16sing1.09Å1.10Å
C27H17sing1.09Å1.10Å
C28H18sing1.09Å1.10Å
C1H19sing1.08Å1.08Å
C15H20sing1.09Å1.10Å
C15H21sing1.09Å1.10Å
C15H22sing1.09Å1.10Å
O2H23sing0.97Å0.95Å
O4H24sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C15O1C14119.0°117.0°
O1C15H20109.5°109.5°
O1C15H21109.5°109.5°
O1C15H22109.4°109.5°
O1C14C16115.4°120.0°
O1C14C13125.7°120.0°
O2C16C14119.6°120.2°
O2C16C10119.9°120.2°
C16O2H23109.5°114.0°
C16C14C13118.9°120.0°
C14C16C10120.5°119.7°
C14C13C12120.6°120.3°
C14C13H6119.7°119.9°
C16C10C9118.3°120.1°
C16C10C11120.2°119.7°
C13C12C11119.8°120.3°
C13C12H5120.1°119.8°
C12C13H6119.7°119.8°
C9C10C11121.5°120.1°
C10C9N3119.9°126.5°
C10C9N2128.4°126.6°
C10C11C12120.0°120.0°
C10C11H4120.0°120.0°
C12C11H4120.0°120.0°
C11C12H5120.1°119.9°
C9N3N4106.6°110.0°
N3C9N2110.9°106.9°
N3N4C8105.3°110.1°
C9N2C4134.3°133.0°
C9N2C8103.5°106.0°
C4N2C8121.9°121.0°
N2C4C3124.8°121.3°
N2C4C5117.1°119.1°
N2C8N4113.1°107.0°
N2C8N1121.8°121.4°
C2C3C4121.0°119.8°
C3C2C1120.5°120.6°
C3C2H1119.8°119.6°
C2C3H2119.5°120.1°
C3C4C5118.1°119.6°
C4C3H2119.5°120.1°
N4C8N1125.1°131.7°
C2C1C6119.1°120.4°
C1C2H1119.7°119.7°
C2C1H19120.5°119.8°
C4C5C6120.1°119.9°
C4C5C7120.4°118.7°
C8N1C17118.6°119.5°
C8N1C7121.9°121.0°
C1C6C5121.1°119.6°
C1C6H3119.4°120.2°
C6C1H19120.5°119.8°
C6C5C7119.5°121.4°
C5C6H3119.5°120.2°
C5C7N1116.8°118.9°
C5C7O6119.9°120.6°
C17N1C7119.5°119.5°
N1C17C18116.1°109.5°
N1C17H7107.8°109.5°
N1C17H8107.8°109.5°
N1C7O6123.3°120.6°
C17C18C23118.2°119.9°
C17C18C19122.4°119.8°
C18C17H7107.8°109.4°
C18C17H8107.8°109.5°
CL1C23C18120.8°119.9°
CL1C23C22119.6°120.0°
C23C18C19119.5°120.3°
C18C23C22119.5°120.1°
C18C19C20120.3°120.1°
C18C19H9119.8°119.9°
C23C22C21121.6°119.9°
C23C22H11119.2°120.1°
C19C20C21121.0°119.9°
C20C19H9119.9°120.0°
C19C20H10119.5°120.1°
C22C21C20118.1°119.7°
C22C21C24121.2°120.2°
C21C22H11119.2°120.1°
C20C21C24120.6°120.2°
C21C20H10119.5°120.0°
C21C24O3117.0°120.0°
C21C24N5123.0°120.0°
O3C24N5119.7°119.9°
C24N5C28129.8°125.7°
C24N5C25123.9°125.6°
C28N5C25106.3°108.7°
N5C28C29117.7°110.0°
N5C28C27104.4°107.3°
N5C28H18108.6°109.9°
N5C25C26103.7°104.8°
N5C25H12110.9°110.4°
N5C25H13110.9°110.5°
O5C29C28120.4°120.0°
O5C29O4118.6°120.0°
C28C29O4121.0°120.0°
C29C28C27110.0°109.9°
C29C28H18107.9°109.9°
C29O4H24109.5°117.0°
C28C27C26106.5°103.0°
C28C27H16110.2°110.7°
C28C27H17110.2°110.9°
C27C28H18107.8°109.9°
C25C26C27104.1°101.6°
C26C25H12110.9°110.3°
C26C25H13110.9°110.3°
C25C26H14110.8°111.0°
C25C26H15110.8°111.0°
C27C26H14110.8°111.0°
C27C26H15110.8°111.1°
C26C27H16110.2°110.7°
C26C27H17110.2°110.7°
H7C17H8109.5°109.5°
H12C25H13109.5°110.4°
H14C26H15109.5°110.9°
H16C27H17109.5°110.7°
H20C15H21109.5°109.5°
H20C15H22109.5°109.4°
H21C15H22109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C15O1C14C16179.6°180.0°
C15O1C14C130.9°0.3°
O1C15H20H21120.0°120.1°
O1C15H20H22120.0°120.0°
O1C15H21H22120.0°120.0°
O1C14C16O20.7°0.2°
O1C14C16C13179.6°179.7°
O1C14C16C10179.0°180.0°
O1C14C13C12178.1°179.8°
O1C14C13H61.9°0.3°
C14O1C15H20180.0°60.0°
C14O1C15H2160.0°60.0°
C14O1C15H2260.0°180.0°
O2C16C14C10178.3°179.8°
O2C16C14C13179.8°180.0°
O2C16C10C92.3°0.0°
O2C16C10C11178.5°179.7°
C16C14C13C122.4°0.0°
C14C16C10C9179.4°179.7°
C14C16C10C110.2°0.5°
C16C14C13H6177.6°180.0°
C14C16O2H23180.0°90.0°
C13C14C16C101.5°0.3°
C14C13C12H6180.0°180.0°
C14C13C12C112.1°0.0°
C14C13C12H5177.9°180.0°
C16C10C9C11179.1°179.8°
C16C10C11C120.1°0.5°
C16C10C9N394.3°60.6°
C16C10C9N274.3°119.3°
C16C10C11H4179.9°179.8°
C10C16O2H231.7°89.8°
C13C12C11C100.8°0.3°
C13C12C11H5180.0°179.9°
C13C12C11H4179.2°180.0°
C9C10C11C12179.0°179.7°
C10C9N3N2170.4°180.0°
C10C9N3N4178.7°180.0°
C10C9N2C410.9°0.0°
C10C9N2C8175.7°180.0°
C9C10C11H41.0°0.0°
C10C11C12H4180.0°179.7°
C11C10C9N386.6°119.1°
C11C10C9N2104.9°60.9°
C10C11C12H5179.2°179.8°
C11C12C13H6177.9°180.0°
N3C9N2C4179.8°180.0°
N3C9N2C86.3°0.0°
C9N3N4C86.7°0.0°
N4N3C9N28.3°0.0°
N3N4C8N23.0°0.1°
N3N4C8N1176.7°180.0°
C9N2C4C8172.4°180.0°
C9N2C4C34.3°0.0°
C9N2C8N41.9°0.1°
C9N2C4C5174.8°180.0°
C9N2C8N1178.4°180.0°
N2C4C3C2177.3°180.0°
N2C4C3C5179.1°179.9°
C4N2C8N4176.3°180.0°
C4N2C8N13.9°0.0°
N2C4C5C6179.6°180.0°
N2C4C5C70.4°0.0°
N2C4C3H22.6°0.1°
C8N2C4C3176.8°179.9°
N2C8N4N1179.7°179.9°
C8N2C4C52.4°0.0°
N2C8N1C17176.8°180.0°
N2C8N1C73.4°0.1°
C2C3C4H2180.0°180.0°
C3C2C1H1180.0°179.7°
C2C3C4C53.5°0.0°
C3C2C1C61.3°0.0°
C3C2C1H19178.7°179.7°
C4C3C2C13.6°0.0°
C3C4C5C61.2°0.0°
C3C4C5C7178.8°180.0°
C4C3C2H1176.4°179.7°
N4C8N1C172.9°0.1°
N4C8N1C7176.9°180.0°
C2C1C6H19180.0°179.7°
C2C1C6C51.0°0.1°
C1C2C3H2176.4°180.0°
C2C1C6H3179.0°180.0°
C4C5C6C11.0°0.1°
C4C5C6C7179.9°180.0°
C4C5C7N10.0°0.0°
C4C5C7O6179.9°179.9°
C5C4C3H2176.5°180.0°
C4C5C6H3179.0°180.0°
C8N1C7C51.4°0.1°
C8N1C17C7179.8°180.0°
C8N1C17C1899.1°94.2°
C8N1C7O6178.5°180.0°
C8N1C17H721.9°25.8°
C8N1C17H8140.0°145.8°
C1C6C5H3180.0°179.9°
C1C6C5C7179.0°179.9°
C6C1C2H1178.7°179.7°
C6C5C7N1180.0°180.0°
C6C5C7O60.2°0.1°
C5C6C1H19179.0°179.8°
C5C7N1C17178.9°180.0°
C5C7N1O6179.8°179.9°
C7C5C6H31.1°0.0°
N1C17C18H7121.0°120.0°
N1C17C18H8120.9°120.0°
C17N1C7O61.3°0.1°
N1C17C18C23172.5°173.9°
N1C17C18C196.8°5.8°
N1C17H7H8117.0°120.0°
C7N1C17C1880.7°85.9°
C7N1C17H7158.3°154.1°
C7N1C17H840.2°34.1°
C17C18C23CL11.4°0.0°
C17C18C23C19179.3°179.7°
C17C18C23C22179.2°179.8°
C17C18C19C20179.2°180.0°
C18C17H7H8117.0°120.0°
C17C18C19H90.8°0.1°
CL1C23C18C22179.5°179.8°
CL1C23C18C19179.3°179.7°
CL1C23C22C21179.6°179.7°
CL1C23C22H110.3°0.0°
C23C18C19C200.1°0.3°
C18C23C22C210.2°0.5°
C23C18C17H766.5°66.2°
C23C18C17H851.6°53.8°
C23C18C19H9179.9°179.8°
C18C23C22H11179.8°179.8°
C19C18C23C220.2°0.5°
C18C19C20H9180.0°179.9°
C18C19C20C210.3°0.1°
C19C18C17H7114.2°114.2°
C19C18C17H8127.7°125.8°
C18C19C20H10179.7°180.0°
C23C22C21H11180.0°179.7°
C23C22C21C200.6°0.3°
C23C22C21C24175.4°179.8°
C19C20C21C220.6°0.1°
C19C20C21H10180.0°180.0°
C19C20C21C24175.5°180.0°
C22C21C20C24174.9°179.9°
C22C21C24O323.5°152.9°
C22C21C24N5162.2°27.0°
C22C21C20H10179.4°180.0°
C20C21C24O3151.2°27.0°
C20C21C24N523.1°153.0°
C21C20C19H9179.7°180.0°
C20C21C22H11179.4°180.0°
C21C24O3N5174.5°180.0°
C21C24N5C2870.4°176.0°
C21C24N5C25110.7°4.1°
C24C21C20H104.5°0.1°
C24C21C22H114.5°0.1°
O3C24N5C28115.5°4.1°
O3C24N5C2563.5°175.9°
C24N5C28C25179.1°180.0°
C24N5C28C2925.5°61.6°
C24N5C28C27147.7°179.0°
C24N5C25C26139.1°155.9°
C24N5C25H12101.8°85.3°
C24N5C25H1320.1°37.1°
C24N5C28H1897.5°59.6°
N5C28C29O516.3°0.6°
N5C28C29C27119.3°117.9°
N5C28C29H18123.3°121.1°
N5C28C29O4164.7°179.3°
N5C28C27H18115.4°119.4°
C28N5C25C2640.1°24.1°
N5C28C27C2610.5°22.2°
C28N5C25H1279.0°94.7°
C28N5C25H13159.1°143.0°
N5C28C27H16109.0°140.6°
N5C28C27H17130.1°96.2°
C25N5C28C29153.6°118.4°
C25N5C28C2731.4°1.0°
N5C25C26H12119.1°118.8°
N5C25C26H13119.1°118.9°
N5C25C26C2732.1°37.0°
N5C25H12H13122.7°122.4°
N5C25C26H14151.2°81.1°
N5C25C26H1587.1°155.1°
C25N5C28H1883.4°120.5°
O5C29C28O4179.0°179.9°
O5C29C28C27102.9°118.5°
O5C29C28H18139.7°120.5°
O5C29O4H240.0°0.1°
C29C28C27H18117.5°121.0°
C29C28C27C26137.7°141.7°
C29C28C27H1618.1°99.9°
C29C28C27H17102.8°23.3°
C28C29O4H24179.0°180.0°
O4C29C28C2776.0°61.4°
O4C29C28H1841.4°59.6°
C28C27C26C2513.0°35.5°
C28C27C26H16119.5°118.4°
C28C27C26H17119.5°118.5°
C28C27C26H14132.2°82.5°
C28C27C26H15106.1°153.6°
C28C27H16H17121.4°123.4°
C25C26C27H14119.1°118.0°
C25C26C27H15119.1°118.1°
C26C25H12H13122.6°122.2°
C25C26H14H15122.5°123.9°
C25C26C27H16132.5°153.9°
C25C26C27H17106.5°83.0°
C27C26C25H1287.0°81.8°
C27C26C25H13151.1°155.9°
C27C26H14H15122.5°123.9°
C26C27H16H17121.4°123.1°
C26C27C28H18104.9°97.2°
H1C2C3H23.6°0.3°
H1C2C1H191.3°0.0°
H3C6C1H191.0°0.3°
H4C11C12H50.8°0.1°
H5C12C13H62.1°0.1°
H9C19C20H100.3°0.0°
H12C25C26H1432.1°160.1°
H12C25C26H15153.8°36.3°
H13C25C26H1489.7°37.9°
H13C25C26H1532.0°85.9°
H14C26C27H16108.3°35.8°
H14C26C27H1712.6°158.9°
H15C26C27H1613.4°88.0°
H15C26C27H17134.3°35.1°
H16C27C28H18135.6°21.1°
H17C27C28H1814.7°144.4°
H20C15H21H22120.0°119.9°

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon