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SummaryGeometryRelated PDB entries

DYT

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
OAACAIdoub1.21Å1.25Å
CAIOABsing1.34Å1.26Å
CAICAKsing1.51Å1.51Å
NAGCAEsing1.34Å1.38ÅAromatic
NAGCADdoub1.30Å1.37ÅAromatic
CAECAJdoub1.35Å1.38ÅAromatic
CADNAHsing1.35Å1.38ÅAromatic
CAKCL1sing1.80Å1.75Å
CAKCAFsing1.53Å1.51Å
CAJNAHsing1.37Å1.37ÅAromatic
CAJCAFsing1.51Å1.51Å
OABH1sing0.97Å0.95Å
CAKHAKsing1.09Å1.10Å
CAFHAGsing1.09Å1.10Å
CAFHAFsing1.09Å1.10Å
CAEHAEsing1.08Å1.08Å
CADHADsing1.08Å1.08Å
NAHHAHsing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OAACAIOAB120.3°120.0°
OAACAICAK120.1°120.0°
OABCAICAK119.5°120.0°
CAIOABH1109.5°117.0°
CAICAKCL1108.1°109.5°
CAICAKCAF111.6°109.5°
CAICAKHAK110.6°109.5°
CAENAGCAD108.3°109.3°
NAGCAECAJ107.6°108.0°
NAGCAEHAE126.2°126.0°
NAGCADNAH107.9°108.6°
NAGCADHAD126.1°125.7°
CAECAJNAH108.1°106.8°
CAECAJCAF126.8°126.6°
CAJCAEHAE126.2°126.0°
CADNAHCAJ108.1°107.2°
NAHCADHAD126.0°125.7°
CADNAHHAH125.9°126.3°
CL1CAKCAF107.9°109.5°
CL1CAKHAK107.8°109.4°
CAKCAFCAJ112.6°109.5°
CAFCAKHAK110.6°109.5°
CAKCAFHAG108.7°109.5°
CAKCAFHAF108.7°109.5°
NAHCAJCAF125.1°126.5°
CAJNAHHAH126.0°126.4°
CAJCAFHAG108.7°109.5°
CAJCAFHAF108.7°109.4°
HAGCAFHAF109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OAACAIOABCAK178.3°179.7°
OAACAICAKCL1127.6°75.0°
OAACAICAKCAF113.9°45.0°
OAACAIOABH10.0°0.0°
OAACAICAKHAK9.8°165.0°
OABCAICAKCL150.7°104.7°
OABCAICAKCAF67.8°135.3°
OABCAICAKHAK168.5°15.3°
CAICAKCL1CAF120.9°120.0°
CAICAKCL1HAK119.6°120.0°
CAICAKCAFHAK123.7°120.0°
CAICAKCAFCAJ53.3°175.0°
CAKCAIOABH1178.3°179.7°
CAICAKCAFHAG173.8°65.0°
CAICAKCAFHAF67.2°55.0°
NAGCAECAJHAE180.0°180.0°
CAENAGCADNAH0.1°0.0°
NAGCAECAJNAH0.4°0.0°
NAGCAECAJCAF179.1°179.7°
CAENAGCADHAD179.9°179.9°
CADNAGCAECAJ0.2°0.0°
NAGCADNAHHAD180.0°179.9°
NAGCADNAHCAJ0.4°0.0°
CADNAGCAEHAE179.8°180.0°
NAGCADNAHHAH179.7°179.7°
CAECAJNAHCAD0.5°0.0°
CAECAJCAFCAK49.1°84.7°
CAECAJNAHCAF178.7°179.7°
CAECAJCAFHAG71.3°155.3°
CAECAJCAFHAF169.6°35.3°
CAECAJNAHHAH179.5°179.7°
CADNAHCAJHAH180.0°179.7°
CADNAHCAJCAF179.2°179.7°
CL1CAKCAFHAK117.7°120.0°
CL1CAKCAFCAJ171.9°65.0°
CL1CAKCAFHAG67.6°55.0°
CL1CAKCAFHAF51.5°175.0°
CAKCAFCAJNAH132.4°95.0°
CAKCAFCAJHAG120.4°120.0°
CAKCAFCAJHAF120.5°120.0°
CAKCAFHAGHAF118.5°120.0°
NAHCAJCAFHAG107.1°25.0°
NAHCAJCAFHAF12.0°145.0°
NAHCAJCAEHAE179.6°180.0°
CAJNAHCADHAD179.6°179.9°
CAJCAFCAKHAK70.4°54.9°
CAJCAFHAGHAF118.6°120.0°
CAFCAJCAEHAE0.9°0.2°
CAFCAJNAHHAH0.8°0.0°
HAKCAKCAFHAG50.1°175.0°
HAKCAKCAFHAF169.1°65.0°
HADCADNAHHAH0.3°0.4°

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PDB entries from 2026-02-04

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