DY8
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O | C | doub | 1.21Å | 1.22Å | |
| C | OXT | sing | 1.34Å | 1.22Å | |
| C | CA | sing | 1.51Å | 1.53Å | |
| NE2 | CD2 | sing | 1.34Å | 1.38Å | Aromatic |
| NE2 | CE1 | doub | 1.30Å | 1.36Å | Aromatic |
| CD2 | CG | doub | 1.35Å | 1.38Å | Aromatic |
| CAG | CAE | sing | 1.53Å | 1.52Å | |
| CAG | N | sing | 1.47Å | 1.44Å | |
| CE1 | ND1 | sing | 1.35Å | 1.39Å | Aromatic |
| CAE | OAL | sing | 1.43Å | 1.40Å | |
| CA | N | sing | 1.47Å | 1.44Å | |
| CA | CB | sing | 1.53Å | 1.52Å | |
| CG | ND1 | sing | 1.37Å | 1.37Å | Aromatic |
| CG | CB | sing | 1.51Å | 1.52Å | |
| N | CAH | sing | 1.47Å | 1.44Å | |
| OAL | CAF | sing | 1.43Å | 1.40Å | |
| CAH | CAF | sing | 1.53Å | 1.51Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| CAG | HAG | sing | 1.09Å | 1.10Å | |
| CAG | HE4 | sing | 1.09Å | 1.10Å | |
| CAE | HAE | sing | 1.09Å | 1.10Å | |
| CAE | HE2 | sing | 1.09Å | 1.10Å | |
| CAF | HE3 | sing | 1.09Å | 1.10Å | |
| CAF | HAF | sing | 1.09Å | 1.10Å | |
| CAH | HE5 | sing | 1.09Å | 1.10Å | |
| CAH | HAH | sing | 1.09Å | 1.10Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| OXT | H1 | sing | 0.97Å | 0.95Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CB | HB1 | sing | 1.09Å | 1.10Å | |
| CD2 | HD2 | sing | 1.08Å | 1.08Å | |
| NE2 | H2 | sing | 0.97Å | 1.00Å | |
| CE1 | HE1 | sing | 1.08Å | 1.08Å | |
| ND1 | HD1 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O | C | OXT | 119.9° | 120.0° |
| O | C | CA | 120.3° | 120.1° |
| OXT | C | CA | 119.8° | 119.9° |
| C | OXT | H1 | 109.5° | 117.0° |
| C | CA | N | 108.7° | 109.5° |
| C | CA | CB | 108.7° | 109.5° |
| C | CA | HA | 108.4° | 109.5° |
| CD2 | NE2 | CE1 | 108.3° | 109.2° |
| NE2 | CD2 | CG | 108.0° | 108.0° |
| NE2 | CD2 | HD2 | 126.0° | 126.0° |
| CD2 | NE2 | H2 | 125.8° | 125.4° |
| NE2 | CE1 | ND1 | 107.7° | 108.7° |
| CE1 | NE2 | H2 | 125.8° | 125.4° |
| NE2 | CE1 | HE1 | 126.1° | 125.6° |
| CD2 | CG | ND1 | 107.5° | 106.8° |
| CD2 | CG | CB | 127.9° | 126.6° |
| CG | CD2 | HD2 | 126.0° | 126.0° |
| CAE | CAG | N | 121.7° | 109.3° |
| CAG | CAE | OAL | 113.7° | 109.3° |
| CAE | CAG | HAG | 106.3° | 109.5° |
| CAE | CAG | HE4 | 106.3° | 109.5° |
| CAG | CAE | HAE | 108.4° | 109.5° |
| CAG | CAE | HE2 | 108.4° | 109.5° |
| CAG | N | CA | 108.0° | 109.5° |
| CAG | N | CAH | 114.3° | 109.4° |
| CAG | N | H | 106.9° | 109.5° |
| N | CAG | HAG | 106.3° | 109.5° |
| N | CAG | HE4 | 106.3° | 109.5° |
| CE1 | ND1 | CG | 108.4° | 107.2° |
| ND1 | CE1 | HE1 | 126.1° | 125.7° |
| CE1 | ND1 | HD1 | 125.8° | 126.4° |
| CAE | OAL | CAF | 109.9° | 113.6° |
| OAL | CAE | HAE | 108.4° | 109.5° |
| OAL | CAE | HE2 | 108.4° | 109.6° |
| N | CA | CB | 113.1° | 109.4° |
| CA | N | CAH | 113.4° | 109.4° |
| CA | N | H | 106.9° | 109.5° |
| N | CA | HA | 109.5° | 109.4° |
| CA | CB | CG | 113.0° | 109.5° |
| CB | CA | HA | 108.4° | 109.5° |
| CA | CB | HB2 | 108.6° | 109.5° |
| CA | CB | HB1 | 108.6° | 109.4° |
| ND1 | CG | CB | 124.5° | 126.6° |
| CG | ND1 | HD1 | 125.8° | 126.4° |
| CG | CB | HB2 | 108.6° | 109.5° |
| CG | CB | HB1 | 108.6° | 109.5° |
| N | CAH | CAF | 115.6° | 109.4° |
| CAH | N | H | 106.9° | 109.5° |
| N | CAH | HE5 | 107.9° | 109.5° |
| N | CAH | HAH | 107.9° | 109.5° |
| OAL | CAF | CAH | 109.3° | 109.3° |
| OAL | CAF | HE3 | 109.6° | 109.5° |
| OAL | CAF | HAF | 109.5° | 109.5° |
| CAH | CAF | HE3 | 109.5° | 109.5° |
| CAH | CAF | HAF | 109.5° | 109.6° |
| CAF | CAH | HE5 | 107.9° | 109.5° |
| CAF | CAH | HAH | 107.9° | 109.5° |
| HAG | CAG | HE4 | 109.4° | 109.6° |
| HAE | CAE | HE2 | 109.5° | 109.5° |
| HE3 | CAF | HAF | 109.5° | 109.5° |
| HE5 | CAH | HAH | 109.5° | 109.5° |
| HB2 | CB | HB1 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O | C | OXT | CA | 178.9° | 180.0° |
| O | C | CA | N | 123.0° | 15.5° |
| O | C | CA | CB | 113.5° | 104.5° |
| O | C | CA | HA | 4.1° | 135.5° |
| O | C | OXT | H1 | 0.0° | 0.0° |
| OXT | C | CA | N | 55.9° | 164.5° |
| OXT | C | CA | CB | 67.6° | 75.5° |
| OXT | C | CA | HA | 174.8° | 44.5° |
| C | CA | N | CAG | 69.3° | 65.7° |
| C | CA | N | CB | 120.8° | 120.0° |
| C | CA | N | HA | 118.2° | 120.0° |
| C | CA | CB | HA | 117.6° | 120.1° |
| C | CA | CB | CG | 57.3° | 176.1° |
| C | CA | N | CAH | 163.0° | 54.2° |
| C | CA | N | H | 45.4° | 174.2° |
| CA | C | OXT | H1 | 178.9° | 180.0° |
| C | CA | CB | HB2 | 177.8° | 63.8° |
| C | CA | CB | HB1 | 63.2° | 56.1° |
| CD2 | NE2 | CE1 | H2 | 180.0° | 179.9° |
| NE2 | CD2 | CG | HD2 | 180.0° | 180.0° |
| CD2 | NE2 | CE1 | ND1 | 0.0° | 0.1° |
| NE2 | CD2 | CG | ND1 | 0.6° | 0.0° |
| NE2 | CD2 | CG | CB | 179.4° | 179.8° |
| CD2 | NE2 | CE1 | HE1 | 180.0° | 180.0° |
| CE1 | NE2 | CD2 | CG | 0.4° | 0.0° |
| NE2 | CE1 | ND1 | HE1 | 180.0° | 180.0° |
| NE2 | CE1 | ND1 | CG | 0.3° | 0.0° |
| CE1 | NE2 | CD2 | HD2 | 179.6° | 179.9° |
| NE2 | CE1 | ND1 | HD1 | 179.6° | 179.7° |
| CD2 | CG | ND1 | CE1 | 0.6° | 0.0° |
| CD2 | CG | CB | CA | 38.2° | 84.4° |
| CD2 | CG | ND1 | CB | 178.8° | 179.8° |
| CD2 | CG | CB | HB2 | 82.3° | 155.5° |
| CD2 | CG | CB | HB1 | 158.7° | 35.5° |
| CG | CD2 | NE2 | H2 | 179.6° | 180.0° |
| CD2 | CG | ND1 | HD1 | 179.4° | 179.7° |
| CAE | CAG | N | HAG | 121.7° | 119.9° |
| CAE | CAG | N | HE4 | 121.7° | 119.9° |
| CAG | CAE | OAL | HAE | 120.6° | 119.9° |
| CAG | CAE | OAL | HE2 | 120.6° | 119.9° |
| CAE | CAG | N | CA | 118.3° | 180.0° |
| CAE | CAG | N | CAH | 8.9° | 60.1° |
| CAG | CAE | OAL | CAF | 45.7° | 57.9° |
| CAE | CAG | N | H | 127.0° | 60.0° |
| CAE | CAG | HAG | HE4 | 114.5° | 120.1° |
| CAG | CAE | HAE | HE2 | 118.1° | 120.1° |
| N | CAG | CAE | OAL | 6.3° | 57.7° |
| CAG | N | CA | CAH | 127.7° | 119.9° |
| CAG | N | CA | H | 114.7° | 120.1° |
| CAG | N | CA | CB | 169.9° | 54.3° |
| CAG | N | CAH | H | 118.1° | 120.1° |
| CAG | N | CAH | CAF | 14.0° | 60.1° |
| N | CAG | HAG | HE4 | 114.5° | 120.0° |
| N | CAG | CAE | HAE | 126.9° | 177.6° |
| N | CAG | CAE | HE2 | 114.3° | 62.3° |
| CAG | N | CAH | HE5 | 134.9° | 180.0° |
| CAG | N | CAH | HAH | 106.9° | 59.9° |
| CAG | N | CA | HA | 48.9° | 174.2° |
| CE1 | ND1 | CG | HD1 | 180.0° | 179.7° |
| CE1 | ND1 | CG | CB | 179.4° | 179.8° |
| ND1 | CE1 | NE2 | H2 | 179.9° | 180.0° |
| CAE | OAL | CAF | CAH | 69.4° | 57.9° |
| OAL | CAE | CAG | HAG | 128.0° | 62.3° |
| OAL | CAE | CAG | HE4 | 115.4° | 177.6° |
| OAL | CAE | HAE | HE2 | 118.1° | 120.2° |
| CAE | OAL | CAF | HE3 | 170.7° | 177.8° |
| CAE | OAL | CAF | HAF | 50.6° | 62.1° |
| N | CA | CB | HA | 121.6° | 119.9° |
| N | CA | CB | CG | 178.1° | 63.9° |
| CA | N | CAH | H | 117.5° | 120.0° |
| CA | N | CAH | CAF | 138.4° | 180.0° |
| CA | N | CAG | HAG | 120.0° | 60.0° |
| CA | N | CAG | HE4 | 3.4° | 60.1° |
| CA | N | CAH | HE5 | 100.7° | 60.0° |
| CA | N | CAH | HAH | 17.5° | 60.0° |
| N | CA | CB | HB2 | 61.4° | 56.2° |
| N | CA | CB | HB1 | 57.6° | 176.1° |
| CA | CB | CG | ND1 | 143.2° | 95.3° |
| CA | CB | CG | HB2 | 120.5° | 120.0° |
| CA | CB | CG | HB1 | 120.5° | 120.0° |
| CB | CA | N | CAH | 42.2° | 174.2° |
| CB | CA | N | H | 75.4° | 65.8° |
| CA | CB | HB2 | HB1 | 118.4° | 119.9° |
| ND1 | CG | CB | HB2 | 96.3° | 24.8° |
| ND1 | CG | CB | HB1 | 22.7° | 144.7° |
| ND1 | CG | CD2 | HD2 | 179.4° | 180.0° |
| CG | ND1 | CE1 | HE1 | 179.7° | 180.0° |
| CG | CB | CA | HA | 60.3° | 56.0° |
| CG | CB | HB2 | HB1 | 118.4° | 120.0° |
| CB | CG | CD2 | HD2 | 0.7° | 0.3° |
| CB | CG | ND1 | HD1 | 0.6° | 0.0° |
| N | CAH | CAF | OAL | 53.6° | 57.7° |
| N | CAH | CAF | HE5 | 120.9° | 120.0° |
| N | CAH | CAF | HAH | 120.9° | 120.0° |
| CAH | N | CAG | HAG | 112.8° | 59.9° |
| CAH | N | CAG | HE4 | 130.6° | 180.0° |
| N | CAH | CAF | HE3 | 173.6° | 177.6° |
| N | CAH | CAF | HAF | 66.3° | 62.3° |
| N | CAH | HE5 | HAH | 117.2° | 120.1° |
| CAH | N | CA | HA | 78.8° | 65.9° |
| OAL | CAF | CAH | HE3 | 120.0° | 119.9° |
| OAL | CAF | CAH | HAF | 119.9° | 120.0° |
| CAF | OAL | CAE | HAE | 166.3° | 177.8° |
| CAF | OAL | CAE | HE2 | 74.9° | 62.0° |
| OAL | CAF | HE3 | HAF | 120.1° | 120.1° |
| OAL | CAF | CAH | HE5 | 174.5° | 177.6° |
| OAL | CAF | CAH | HAH | 67.2° | 62.4° |
| CAF | CAH | N | H | 104.1° | 60.0° |
| CAH | CAF | HE3 | HAF | 120.1° | 120.2° |
| CAF | CAH | HE5 | HAH | 117.2° | 120.1° |
| H | N | CAG | HAG | 5.3° | 179.9° |
| H | N | CAG | HE4 | 111.3° | 60.0° |
| H | N | CAH | HE5 | 16.8° | 60.0° |
| H | N | CAH | HAH | 135.0° | 180.0° |
| H | N | CA | HA | 163.6° | 54.1° |
| HAG | CAG | CAE | HAE | 111.4° | 57.7° |
| HAG | CAG | CAE | HE2 | 7.4° | 177.8° |
| HE4 | CAG | CAE | HAE | 5.2° | 62.5° |
| HE4 | CAG | CAE | HE2 | 124.0° | 57.6° |
| HE3 | CAF | CAH | HE5 | 65.5° | 62.5° |
| HE3 | CAF | CAH | HAH | 52.8° | 57.5° |
| HAF | CAF | CAH | HE5 | 54.6° | 57.6° |
| HAF | CAF | CAH | HAH | 172.8° | 177.7° |
| HA | CA | CB | HB2 | 60.2° | 176.1° |
| HA | CA | CB | HB1 | 179.2° | 64.0° |
| HD2 | CD2 | NE2 | H2 | 0.4° | 0.0° |
| H2 | NE2 | CE1 | HE1 | 0.0° | 0.0° |
| HE1 | CE1 | ND1 | HD1 | 0.4° | 0.3° |
