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DXA

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1O1doub1.21Å1.20Å
C1C9Asing1.47Å1.48Å
C1C2sing1.51Å1.55Å
C9AC4Adoub1.41Å1.47ÅAromatic
C9AC9sing1.40Å1.45ÅAromatic
C2C3sing1.53Å1.54Å
C2H21sing1.09Å1.09Å
C2H22sing1.09Å1.11Å
C3C4sing1.53Å1.54Å
C3C1'sing1.53Å1.53Å
C3H3sing1.09Å1.09Å
C4C4Asing1.51Å1.51Å
C4H4Asing1.09Å1.09Å
C4H4Esing1.09Å1.09Å
C4AC10sing1.36Å1.46ÅAromatic
C10C5Adoub1.41Å1.44ÅAromatic
C10H10sing1.08Å1.08Å
C5AC5sing1.40Å1.43ÅAromatic
C5AC8Asing1.42Å1.45ÅAromatic
C5C6doub1.36Å1.46ÅAromatic
C5H5sing1.08Å1.08Å
C6C7sing1.39Å1.47ÅAromatic
C6H6sing1.08Å1.10Å
C7C8doub1.38Å1.46ÅAromatic
C7C6'sing1.51Å1.52Å
C8O8sing1.36Å1.38Å
C8C8Asing1.41Å1.45ÅAromatic
O8HO8sing0.97Å0.93Å
C8AC9doub1.41Å1.44ÅAromatic
C9O9sing1.35Å1.22Å
O9HO9sing0.97Å0.95Å
CMEO1'sing1.43Å1.41Å
CMEH11sing1.09Å1.09Å
CMEH12sing1.09Å1.09Å
CMEH13sing1.09Å1.09Å
C6'C7'sing1.53Å1.53Å
C6'C8'sing1.53Å1.53Å
C6'H6'sing1.09Å1.09Å
C1'O1'sing1.43Å1.41Å
C1'C2'sing1.51Å1.53Å
C1'H1'sing1.09Å1.09Å
C2'O2'doub1.21Å1.19Å
C2'C3'sing1.51Å1.53Å
C3'O3'sing1.43Å1.41Å
C3'C4'sing1.53Å1.53Å
C3'H3'sing1.09Å1.09Å
O3'HO3sing0.97Å0.95Å
C4'O4'sing1.43Å1.40Å
C4'C5'sing1.53Å1.53Å
C4'H4'sing1.09Å1.09Å
O4'HO4sing0.97Å0.95Å
C5'H51sing1.09Å1.09Å
C5'H52sing1.09Å1.09Å
C5'H53sing1.09Å1.09Å
C7'H71sing1.09Å1.09Å
C7'H72sing1.09Å1.09Å
C7'H73sing1.09Å1.09Å
C8'C9'sing1.53Å1.53Å
C8'H81sing1.09Å1.09Å
C8'H82sing1.09Å1.09Å
C9'H91sing1.09Å1.09Å
C9'H92sing1.09Å1.09Å
C9'H93sing1.09Å1.09Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C1C9A121.1°121.2°
O1C1C2120.2°121.1°
C9AC1C2118.7°117.7°
C1C9AC4A120.0°120.1°
C1C9AC9119.5°119.2°
C1C2C3110.3°107.4°
C1C2H21108.6°109.9°
C1C2H22111.9°109.9°
C4AC9AC9120.5°120.7°
C9AC4AC4120.3°121.3°
C9AC4AC10119.2°120.1°
C9AC9C8A119.3°119.4°
C9AC9O9120.7°120.3°
C3C2H21110.1°109.8°
C3C2H22111.9°109.8°
C2C3C4111.0°109.4°
C2C3C1'110.4°109.5°
C2C3H3108.4°109.5°
H21C2H22103.7°109.9°
C4C3C1'110.0°109.5°
C4C3H3108.3°109.5°
C3C4C4A112.8°111.3°
C3C4H4A109.8°109.1°
C3C4H4E109.8°109.1°
C1'C3H3108.6°109.5°
C3C1'O1'110.0°109.5°
C3C1'C2'109.4°109.5°
C3C1'H1'110.4°109.5°
C4AC4H4A108.6°109.1°
C4AC4H4E108.7°109.1°
C4C4AC10120.5°118.6°
H4AC4H4E107.0°109.0°
C4AC10C5A119.6°120.7°
C4AC10H10120.4°119.6°
C5AC10H10119.9°119.7°
C10C5AC5118.3°120.9°
C10C5AC8A121.1°119.8°
C5C5AC8A120.6°119.3°
C5AC5C6119.8°120.0°
C5AC5H5120.0°120.0°
C5AC8AC8120.3°119.5°
C5AC8AC9120.3°119.3°
C6C5H5120.2°120.0°
C5C6C7120.2°121.1°
C5C6H6119.8°119.4°
C7C6H6120.1°119.5°
C6C7C8119.0°120.7°
C6C7C6'120.4°119.6°
C8C7C6'120.3°119.7°
C7C8O8119.3°120.3°
C7C8C8A120.1°119.4°
C7C6'C7'111.5°109.5°
C7C6'C8'109.3°109.5°
C7C6'H6'108.1°109.5°
O8C8C8A120.3°120.3°
C8O8HO8109.1°106.8°
C8C8AC9119.4°121.2°
C8AC9O9120.1°120.3°
C9O9HO9120.7°106.8°
O1'CMEH11110.3°109.5°
O1'CMEH12110.3°109.4°
O1'CMEH13110.4°109.5°
CMEO1'C1'113.1°106.8°
H11CMEH12108.6°109.5°
H11CMEH13108.6°109.5°
H12CMEH13108.6°109.5°
C7'C6'C8'110.6°109.5°
C7'C6'H6'108.6°109.4°
C6'C7'H71110.8°109.4°
C6'C7'H72111.0°109.5°
C6'C7'H73111.1°109.5°
C8'C6'H6'108.6°109.5°
C6'C8'C9'111.8°109.5°
C6'C8'H81109.7°109.5°
C6'C8'H82109.5°109.5°
O1'C1'C2'109.0°109.5°
O1'C1'H1'109.5°109.5°
C2'C1'H1'108.5°109.4°
C1'C2'O2'121.5°120.0°
C1'C2'C3'117.0°120.0°
O2'C2'C3'121.5°120.0°
C2'C3'O3'109.5°109.5°
C2'C3'C4'110.0°109.5°
C2'C3'H3'109.0°109.5°
O3'C3'C4'109.5°109.4°
O3'C3'H3'108.1°109.5°
C3'O3'HO3106.7°106.8°
C4'C3'H3'110.7°109.5°
C3'C4'O4'108.8°109.5°
C3'C4'C5'111.9°109.5°
C3'C4'H4'110.0°109.4°
O4'C4'C5'108.8°109.5°
O4'C4'H4'107.3°109.5°
C4'O4'HO4106.7°106.7°
C5'C4'H4'109.9°109.4°
C4'C5'H51110.9°109.5°
C4'C5'H52110.9°109.5°
C4'C5'H53110.9°109.5°
H51C5'H52108.0°109.5°
H51C5'H53108.0°109.5°
H52C5'H53108.0°109.5°
H71C7'H72107.7°109.4°
H71C7'H73108.0°109.5°
H72C7'H73108.1°109.5°
C9'C8'H81109.4°109.4°
C9'C8'H82109.6°109.4°
C8'C9'H91111.0°109.5°
C8'C9'H92110.9°109.5°
C8'C9'H93110.8°109.4°
H81C8'H82106.7°109.5°
H91C9'H92108.1°109.5°
H91C9'H93108.0°109.5°
H92C9'H93107.9°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C1C9AC2179.6°180.0°
O1C1C9AC4A171.2°168.4°
O1C1C9AC97.6°11.6°
O1C1C2C3143.8°137.2°
O1C1C2H2195.4°17.7°
O1C1C2H2218.5°103.4°
C1C9AC4AC9178.8°180.0°
C9AC1C2C335.8°42.8°
C9AC1C2H2185.0°162.3°
C9AC1C2H22161.1°76.6°
C1C9AC4AC42.7°0.6°
C1C9AC4AC10178.6°179.5°
C1C9AC9C8A178.8°179.7°
C1C9AC9O90.2°0.2°
C2C1C9AC4A8.4°11.6°
C2C1C9AC9172.9°168.4°
C1C2C3H21119.9°119.5°
C1C2C3H22125.2°119.5°
C1C2H21H22119.2°121.1°
C1C2C3C457.7°64.2°
C1C2C3C1'179.9°175.7°
C1C2C3H361.1°55.7°
C9AC4AC4C325.1°22.6°
C9AC4AC4C10178.8°179.9°
C9AC4AC4H4A96.8°143.1°
C9AC4AC4H4E147.1°97.9°
C9AC4AC10C5A0.3°0.3°
C9AC4AC10H10178.7°179.7°
C4AC9AC9C8A0.1°0.3°
C4AC9AC9O9179.0°179.8°
C9C9AC4AC4178.6°179.4°
C9C9AC4AC100.2°0.5°
C9AC9C8AC5A0.1°0.2°
C9AC9C8AC8179.7°179.6°
C9AC9C8AO9179.1°180.0°
C9AC9O9HO9180.0°90.0°
C3C2H21H22119.9°121.0°
C2C3C4C1'122.5°120.0°
C2C3C4H3118.9°119.9°
C2C3C1'H3118.7°120.0°
C2C3C4C4A53.0°54.7°
C2C3C4H4A68.3°175.2°
C2C3C4H4E174.3°65.8°
C2C3C1'O1'59.0°65.2°
C2C3C1'C2'60.7°54.8°
C2C3C1'H1'179.9°174.8°
H21C2C3C462.2°176.3°
H21C2C3C1'60.2°56.2°
H21C2C3H3179.0°63.8°
H22C2C3C4177.0°55.2°
H22C2C3C1'54.7°64.8°
H22C2C3H364.1°175.2°
C4C3C1'H3118.4°120.0°
C3C4C4AH4A122.0°120.5°
C3C4C4AH4E122.0°120.5°
C3C4H4AH4E119.2°119.1°
C3C4C4AC10156.1°157.5°
C4C3C1'O1'178.1°174.8°
C4C3C1'C2'62.2°65.1°
C4C3C1'H1'57.2°54.8°
C1'C3C4C4A175.5°174.7°
C1'C3C4H4A54.2°64.8°
C1'C3C4H4E63.1°54.2°
C3C1'O1'CME83.5°89.9°
C3C1'O1'C2'120.0°120.0°
C3C1'O1'H1'121.5°120.0°
C3C1'C2'H1'120.5°120.0°
C3C1'C2'O2'79.9°90.0°
C3C1'C2'C3'100.2°89.9°
H3C3C4C4A65.9°65.3°
H3C3C4H4A172.8°55.2°
H3C3C4H4E55.4°174.2°
H3C3C1'O1'59.7°54.8°
H3C3C1'C2'179.4°174.8°
H3C3C1'H1'61.2°65.2°
C4AC4H4AH4E117.1°119.1°
C4C4AC10C5A178.4°179.7°
C4C4AC10H102.5°0.4°
H4AC4C4AC1081.9°37.0°
H4EC4C4AC1034.1°82.1°
C4AC10C5AH10179.1°180.0°
C4AC10C5AC5179.6°180.0°
C4AC10C5AC8A0.2°0.2°
C10C5AC5C8A179.3°179.8°
C10C5AC5C6179.6°179.7°
C10C5AC5H50.8°0.4°
C10C5AC8AC8179.5°179.4°
C10C5AC8AC90.0°0.5°
H10C10C5AC50.5°0.0°
H10C10C5AC8A178.8°179.8°
C5AC5C6H5179.6°179.9°
C5AC5C6C70.7°0.0°
C5AC5C6H6179.3°180.0°
C5C5AC8AC80.2°0.4°
C5C5AC8AC9179.3°179.7°
C8AC5AC5C60.3°0.1°
C8AC5AC5H5179.9°179.8°
C5AC8AC8C70.8°0.5°
C5AC8AC8O8173.5°179.7°
C5AC8AC8C9179.5°179.9°
C5AC8AC9O9178.9°179.8°
C5C6C7H6180.0°180.0°
C5C6C7C81.8°0.1°
C5C6C7C6'171.6°179.9°
H5C5C6C7178.9°180.0°
H5C5C6H61.1°0.0°
C6C7C8C6'173.4°179.8°
C6C7C8O8172.6°179.8°
C6C7C8C8A1.8°0.4°
C6C7C6'C7'60.5°60.0°
C6C7C6'C8'62.2°60.0°
C6C7C6'H6'179.8°179.9°
H6C6C7C8178.3°179.9°
H6C6C7C6'8.4°0.1°
C7C8O8C8A174.4°179.8°
C7C8O8HO8157.5°90.2°
C7C8C8AC9179.6°179.6°
C8C7C6'C7'126.2°120.2°
C8C7C6'C8'111.2°119.8°
C8C7C6'H6'6.9°0.3°
C6'C7C8O814.0°0.0°
C6'C7C8C8A171.6°179.8°
C7C6'C7'C8'121.9°120.0°
C7C6'C7'H6'119.0°120.0°
C7C6'C8'H6'117.7°120.0°
C7C6'C7'H71164.7°60.0°
C7C6'C7'H7245.0°60.0°
C7C6'C7'H7375.3°180.0°
C7C6'C8'C9'174.1°180.0°
C7C6'C8'H8152.6°60.0°
C7C6'C8'H8264.2°60.0°
O8C8C8AC96.0°0.2°
C8AC8O8HO828.1°90.0°
C8C8AC9O90.6°0.4°
C8AC9O9HO90.9°90.0°
O1'CMEH11H12120.9°120.0°
O1'CMEH11H13121.1°120.0°
O1'CMEH12H13121.1°120.0°
CMEO1'C1'C2'156.6°150.1°
CMEO1'C1'H1'38.0°30.1°
H11CMEH12H13118.0°120.0°
H11CMEO1'C1'75.3°175.5°
H12CMEO1'C1'164.8°55.5°
H13CMEO1'C1'44.8°64.5°
C7'C6'C8'H6'119.1°119.9°
C6'C7'H71H72121.7°120.0°
C6'C7'H71H73121.8°120.0°
C6'C7'H72H73122.0°120.0°
C7'C6'C8'C9'50.9°60.0°
C7'C6'C8'H8170.7°60.0°
C7'C6'C8'H82172.6°180.0°
C8'C6'C7'H7173.4°60.0°
C8'C6'C7'H72166.9°180.0°
C8'C6'C7'H7346.6°60.0°
C6'C8'C9'H81121.8°120.0°
C6'C8'C9'H82121.6°120.0°
C6'C8'H81H82118.6°120.0°
C6'C8'C9'H9165.1°180.0°
C6'C8'C9'H9255.0°60.0°
C6'C8'C9'H93174.9°59.9°
H6'C6'C7'H7145.7°180.0°
H6'C6'C7'H7274.0°60.0°
H6'C6'C7'H73165.7°60.1°
H6'C6'C8'C9'68.2°60.0°
H6'C6'C8'H81170.2°179.9°
H6'C6'C8'H8253.5°60.1°
O1'C1'C2'H1'119.2°120.0°
O1'C1'C2'O2'40.4°30.0°
O1'C1'C2'C3'139.5°150.0°
C1'C2'O2'C3'180.0°179.9°
C1'C2'C3'O3'117.5°150.0°
C1'C2'C3'C4'122.1°90.1°
C1'C2'C3'H3'0.5°30.0°
H1'C1'C2'O2'159.6°150.0°
H1'C1'C2'C3'20.4°30.0°
O2'C2'C3'O3'62.5°30.0°
O2'C2'C3'C4'57.9°90.0°
O2'C2'C3'H3'179.5°150.0°
C2'C3'O3'C4'120.7°120.0°
C2'C3'O3'H3'118.6°120.0°
C2'C3'C4'H3'120.6°120.0°
C2'C3'O3'HO399.9°60.0°
C2'C3'C4'O4'177.9°60.0°
C2'C3'C4'C5'57.7°180.0°
C2'C3'C4'H4'64.8°60.0°
O3'C3'C4'H3'119.1°120.0°
O3'C3'C4'O4'61.7°60.0°
O3'C3'C4'C5'178.0°60.0°
O3'C3'C4'H4'55.5°180.0°
C4'C3'O3'HO3139.4°59.9°
C3'C4'O4'C5'122.1°120.1°
C3'C4'O4'H4'119.0°120.0°
C3'C4'C5'H4'122.5°119.9°
C3'C4'O4'HO4176.0°60.0°
C3'C4'C5'H5160.3°180.0°
C3'C4'C5'H5259.7°60.0°
C3'C4'C5'H53179.7°60.0°
H3'C3'O3'HO318.7°180.0°
H3'C3'C4'O4'57.3°180.0°
H3'C3'C4'C5'62.9°60.0°
H3'C3'C4'H4'174.6°60.0°
O4'C4'C5'H4'117.3°120.0°
O4'C4'C5'H51179.5°60.0°
O4'C4'C5'H5260.5°179.9°
O4'C4'C5'H5359.5°60.0°
C5'C4'O4'HO461.8°60.0°
C4'C5'H51H52121.7°120.0°
C4'C5'H51H53121.7°120.0°
C4'C5'H52H53121.7°120.0°
H4'C4'O4'HO457.1°180.0°
H4'C4'C5'H5162.2°60.0°
H4'C4'C5'H52177.8°60.0°
H4'C4'C5'H5357.8°180.0°
H51C5'H52H53116.6°120.0°
H71C7'H72H73116.5°120.0°
C9'C8'H81H82118.4°119.9°
C8'C9'H91H92121.9°120.0°
C8'C9'H91H93121.7°120.0°
C8'C9'H92H93121.6°119.9°
H81C8'C9'H91173.1°60.0°
H81C8'C9'H9266.7°60.1°
H81C8'C9'H9353.1°180.0°
H82C8'C9'H9156.5°59.9°
H82C8'C9'H92176.7°180.0°
H82C8'C9'H9363.5°60.1°
H91C9'H92H93116.5°120.1°

222415

PDB entries from 2024-07-10

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