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SummaryGeometryRelated PDB entries

DWV

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CLCCAPsing1.74Å1.70Å
CLDCAQsing1.74Å1.73Å
CAPCAQdoub1.39Å1.41ÅAromatic
CAPCAGsing1.39Å1.43ÅAromatic
CAQCAHsing1.38Å1.33ÅAromatic
CAGCAFdoub1.38Å1.34ÅAromatic
CAHCAOdoub1.40Å1.45ÅAromatic
CAFCAOsing1.40Å1.38ÅAromatic
CAOCAEsing1.47Å1.55Å
CAECATdoub1.36Å1.55Å
SANCATsing1.78Å1.70Å
SANCARsing1.77Å1.74Å
CATCASsing1.47Å1.45Å
CALCAJsing1.53Å1.48Å
CALNAVsing1.47Å1.43Å
CARNAVsing1.37Å1.44Å
CARNAMdoub1.31Å1.37Å
CAJNAUsing1.47Å1.43Å
CASNAMsing1.32Å1.38Å
CASOABdoub1.22Å1.39Å
NAVCAKsing1.47Å1.44Å
NAUCAAsing1.47Å1.41Å
NAUCAIsing1.47Å1.43Å
CAKCAIsing1.53Å1.49Å
CAKH1sing1.09Å1.10Å
CAKH2sing1.09Å1.10Å
CAIH3sing1.09Å1.10Å
CAIH4sing1.09Å1.10Å
CAAH6sing1.09Å1.10Å
CAAH7sing1.09Å1.10Å
CAAH8sing1.09Å1.10Å
CAJH9sing1.09Å1.10Å
CAJH10sing1.09Å1.10Å
CALH11sing1.09Å1.10Å
CALH12sing1.09Å1.10Å
CAEH13sing1.08Å1.08Å
CAHH15sing1.08Å1.08Å
CAGH16sing1.08Å1.08Å
CAFH17sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CLCCAPCAQ122.8°119.9°
CLCCAPCAG117.1°119.9°
CLDCAQCAP122.3°119.9°
CLDCAQCAH118.3°120.0°
CAQCAPCAG120.1°120.3°
CAPCAQCAH119.4°120.1°
CAPCAGCAF120.4°120.2°
CAPCAGH16119.8°119.9°
CAQCAHCAO119.6°119.8°
CAQCAHH15120.2°120.1°
CAGCAFCAO119.7°119.8°
CAFCAGH16119.8°119.9°
CAGCAFH17120.2°120.0°
CAHCAOCAF120.8°119.7°
CAHCAOCAE121.8°120.2°
CAOCAHH15120.2°120.1°
CAFCAOCAE117.3°120.2°
CAOCAFH17120.2°120.1°
CAOCAECAT119.0°120.0°
CAOCAEH13120.5°120.0°
CAECATSAN133.1°128.2°
CAECATCAS122.6°128.2°
CATCAEH13120.5°120.0°
CATSANCAR98.0°94.4°
SANCATCAS104.3°103.6°
SANCARNAV129.6°126.5°
SANCARNAM106.5°107.0°
CATCASNAM115.8°114.6°
CATCASOAB121.4°122.7°
CAJCALNAV112.8°108.5°
CALCAJNAU110.4°109.3°
CALCAJH9109.2°109.5°
CALCAJH10109.2°109.6°
CAJCALH11108.6°109.7°
CAJCALH12108.6°109.6°
CALNAVCAR122.5°120.9°
CALNAVCAK120.6°118.2°
NAVCALH11108.6°109.6°
NAVCALH12108.6°109.6°
NAVCARNAM123.9°126.5°
CARNAVCAK116.9°120.8°
CARNAMCAS115.5°120.4°
CAJNAUCAA118.6°111.0°
CAJNAUCAI110.7°111.3°
NAUCAJH9109.3°109.5°
NAUCAJH10109.3°109.5°
NAMCASOAB122.8°122.7°
NAVCAKCAI116.0°108.5°
NAVCAKH1107.8°109.6°
NAVCAKH2107.8°109.7°
CAANAUCAI119.3°111.0°
NAUCAAH6109.5°109.4°
NAUCAAH7109.4°109.4°
NAUCAAH8109.5°109.5°
NAUCAICAK112.3°109.4°
NAUCAIH3108.8°109.5°
NAUCAIH4108.8°109.5°
CAICAKH1107.8°109.7°
CAICAKH2107.8°109.6°
CAKCAIH3108.7°109.5°
CAKCAIH4108.7°109.4°
H1CAKH2109.5°109.7°
H3CAIH4109.5°109.5°
H6CAAH7109.5°109.5°
H6CAAH8109.5°109.5°
H7CAAH8109.5°109.5°
H9CAJH10109.4°109.4°
H11CALH12109.4°109.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CLCCAPCAQCLD0.2°0.0°
CLCCAPCAQCAG179.8°179.9°
CLCCAPCAQCAH179.9°180.0°
CLCCAPCAGCAF179.9°179.7°
CLCCAPCAGH160.1°0.0°
CLDCAQCAPCAH180.0°180.0°
CLDCAQCAPCAG180.0°180.0°
CLDCAQCAHCAO179.2°180.0°
CLDCAQCAHH150.8°0.0°
CAQCAPCAGCAF0.1°0.3°
CAPCAQCAHCAO0.7°0.0°
CAPCAQCAHH15179.3°180.0°
CAQCAPCAGH16179.9°180.0°
CAGCAPCAQCAH0.0°0.0°
CAPCAGCAFH16180.0°179.7°
CAPCAGCAFCAO0.7°0.6°
CAPCAGCAFH17179.3°179.9°
CAQCAHCAOH15180.0°180.0°
CAQCAHCAOCAF1.6°0.3°
CAQCAHCAOCAE178.5°180.0°
CAGCAFCAOCAH1.5°0.6°
CAGCAFCAOH17180.0°179.5°
CAGCAFCAOCAE178.6°179.7°
CAHCAOCAFCAE177.0°179.7°
CAHCAOCAECAT51.5°20.6°
CAHCAOCAEH13128.5°159.4°
CAHCAOCAFH17178.5°179.9°
CAFCAOCAECAT131.5°159.7°
CAFCAOCAEH1348.5°20.3°
CAFCAOCAHH15178.4°179.7°
CAOCAFCAGH16179.3°179.7°
CAOCAECATH13180.0°180.0°
CAOCAECATSAN2.3°7.2°
CAOCAECATCAS177.8°172.6°
CAECAOCAHH151.5°0.1°
CAECAOCAFH171.4°0.2°
CAECATSANCAS179.9°179.8°
CAECATSANCAR179.8°180.0°
CAECATCASNAM179.9°179.9°
CAECATCASOAB0.4°0.1°
CATSANCARNAV178.5°180.0°
CATSANCARNAM0.2°0.2°
SANCATCASNAM0.0°0.1°
SANCATCASOAB179.6°179.8°
SANCATCAEH13177.7°172.7°
CARSANCATCAS0.1°0.2°
SANCARNAVCAL10.2°179.7°
SANCARNAVNAM178.1°179.8°
SANCARNAMCAS0.2°0.2°
SANCARNAVCAK171.6°0.3°
CATCASNAMCAR0.1°0.1°
CATCASNAMOAB179.7°179.8°
CASCATCAEH132.3°7.4°
CAJCALNAVH11120.5°119.8°
CAJCALNAVH12120.5°119.6°
CAJCALNAVCAR148.4°128.8°
CALCAJNAUH9120.1°120.0°
CALCAJNAUH10120.1°120.0°
CAJCALNAVCAK29.8°51.2°
CALCAJNAUCAA151.8°172.8°
CALCAJNAUCAI64.8°63.1°
CALCAJH9H10119.6°120.1°
CAJCALH11H12118.5°120.5°
CALNAVCARCAK178.2°180.0°
CALNAVCARNAM167.9°0.0°
NAVCALCAJNAU50.0°53.9°
CALNAVCAKCAI22.4°51.1°
CALNAVCAKH198.5°170.9°
CALNAVCAKH2143.3°68.6°
NAVCALCAJH970.1°173.8°
NAVCALCAJH10170.2°66.1°
NAVCALH11H12118.5°120.5°
NAVCARNAMCAS178.7°180.0°
CARNAVCAKCAI155.9°128.9°
CARNAVCAKH183.2°9.1°
CARNAVCAKH235.0°111.4°
CARNAVCALH1191.1°111.4°
CARNAVCALH1227.9°9.2°
CARNAMCASOAB179.8°180.0°
NAMCARNAVCAK10.4°180.0°
CAJNAUCAACAI140.2°124.3°
CAJNAUCAICAK56.5°63.1°
CAJNAUCAIH363.9°176.9°
CAJNAUCAIH4176.9°56.9°
CAJNAUCAAH6180.0°64.3°
CAJNAUCAAH760.0°55.7°
CAJNAUCAAH860.0°175.7°
NAUCAJH9H10119.6°120.0°
NAUCAJCALH1170.5°65.9°
NAUCAJCALH12170.5°173.5°
NAVCAKCAINAU34.5°53.7°
NAVCAKCAIH1120.9°119.7°
NAVCAKCAIH2120.9°119.8°
NAVCAKH1H2117.1°120.5°
NAVCAKCAIH385.9°173.8°
NAVCAKCAIH4155.0°66.2°
CAKNAVCALH1190.7°68.6°
CAKNAVCALH12150.3°170.8°
CAANAUCAICAK160.4°172.8°
CAANAUCAIH379.2°52.8°
CAANAUCAIH440.0°67.3°
NAUCAAH6H7120.0°119.9°
NAUCAAH6H8120.0°120.0°
NAUCAAH7H8120.0°120.0°
CAANAUCAJH988.1°52.8°
CAANAUCAJH1031.6°67.2°
NAUCAICAKH3120.4°120.0°
NAUCAICAKH4120.4°120.0°
NAUCAICAKH186.4°173.5°
NAUCAICAKH2155.5°66.1°
NAUCAIH3H4118.7°120.1°
CAINAUCAAH639.8°60.1°
CAINAUCAAH780.2°180.0°
CAINAUCAAH8159.8°60.0°
CAINAUCAJH955.3°176.9°
CAINAUCAJH10175.0°56.9°
CAICAKH1H2117.0°120.4°
CAKCAIH3H4118.7°120.0°
H1CAKCAIH3153.2°66.5°
H1CAKCAIH434.1°53.5°
H2CAKCAIH335.0°54.0°
H2CAKCAIH484.1°174.0°
H6CAAH7H8120.0°120.1°
H9CAJCALH11169.3°54.1°
H9CAJCALH1250.4°66.5°
H10CAJCALH1149.7°174.1°
H10CAJCALH1269.3°53.5°
H16CAGCAFH170.7°0.2°

220113

PDB entries from 2024-05-22

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