Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryGeometryRelated PDB entries

DVY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O32C30doub1.21Å1.25Å
O31C30sing1.35Å1.24Å
N11S10sing1.66Å1.63Å
C30C29sing1.48Å1.52Å
C29C33doub1.39Å1.40ÅAromatic
C29N28sing1.33Å1.36ÅAromatic
C34C35doub1.38Å1.39ÅAromatic
C34C24sing1.39Å1.41ÅAromatic
C33C25sing1.40Å1.37ÅAromatic
O13S10doub1.42Å1.42Å
S10O12doub1.42Å1.42Å
S10C09sing1.76Å1.69Å
C35C21sing1.39Å1.41ÅAromatic
C08C09doub1.38Å1.40ÅAromatic
C08C07sing1.38Å1.39ÅAromatic
C09C14sing1.38Å1.40ÅAromatic
N28C27doub1.32Å1.35ÅAromatic
C25C24sing1.48Å1.44Å
C25C26doub1.40Å1.40ÅAromatic
C24C23doub1.39Å1.37ÅAromatic
C07C06doub1.39Å1.41ÅAromatic
C21N20sing1.40Å1.36Å
C21C22doub1.39Å1.38ÅAromatic
C14C15doub1.38Å1.38ÅAromatic
N20C18sing1.35Å1.38Å
C27C26sing1.38Å1.40ÅAromatic
C06C15sing1.39Å1.41ÅAromatic
C06N05sing1.40Å1.40Å
N16N17sing1.40Å1.39ÅAromatic
N16C04doub1.31Å1.36ÅAromatic
C23C22sing1.38Å1.36ÅAromatic
C18N17sing1.35Å1.39Å
C18O19doub1.21Å1.22Å
N05C04sing1.39Å1.38Å
N17C02sing1.36Å1.41ÅAromatic
C04N03sing1.34Å1.40ÅAromatic
C02N03doub1.32Å1.34ÅAromatic
C02N01sing1.38Å1.35Å
C15H1sing1.08Å1.08Å
C22H2sing1.08Å1.08Å
C26H3sing1.08Å1.08Å
C07H4sing1.08Å1.08Å
C08H5sing1.08Å1.08Å
C14H6sing1.08Å1.08Å
C23H7sing1.08Å1.08Å
C27H8sing1.08Å1.08Å
C33H9sing1.08Å1.08Å
C34H10sing1.08Å1.08Å
C35H11sing1.08Å1.08Å
N01H12sing0.97Å1.00Å
N01H13sing0.97Å1.00Å
N05H14sing0.97Å1.00Å
N11H15sing0.97Å1.00Å
N11H16sing0.97Å1.00Å
N20H17sing0.97Å1.00Å
O31H18sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O32C30O31129.4°120.0°
O32C30C29116.8°119.9°
O31C30C29113.8°120.0°
C30O31H18109.5°117.0°
N11S10O13105.7°106.4°
N11S10O12105.6°106.4°
N11S10C09109.3°107.2°
S10N11H15109.5°120.0°
S10N11H16109.5°120.0°
C30C29C33120.8°119.7°
C30C29N28116.3°119.6°
C33C29N28122.9°120.6°
C29C33C25119.6°118.9°
C29C33H9120.2°120.6°
C29N28C27116.9°121.9°
C35C34C24121.4°119.9°
C34C35C21119.3°120.1°
C35C34H10119.3°120.1°
C34C35H11120.4°119.9°
C34C24C25124.1°120.0°
C34C24C23117.2°119.9°
C24C34H10119.3°120.0°
C33C25C24120.7°120.9°
C33C25C26118.5°118.2°
C25C33H9120.2°120.5°
O13S10O12118.3°123.1°
O13S10C09108.8°106.4°
O12S10C09108.8°106.4°
S10C09C08124.0°119.9°
S10C09C14122.8°120.0°
C35C21N20122.5°120.0°
C35C21C22118.0°120.1°
C21C35H11120.4°120.0°
C09C08C07123.9°120.1°
C08C09C14113.1°120.1°
C09C08H5118.0°120.0°
C08C07C06121.7°120.0°
C08C07H4119.2°120.0°
C07C08H5118.0°120.0°
C09C14C15124.4°120.1°
C09C14H6117.8°119.9°
N28C27C26123.2°121.1°
N28C27H8118.4°119.5°
C24C25C26120.8°120.9°
C25C24C23118.6°120.1°
C25C26C27118.9°119.2°
C25C26H3120.5°120.3°
C24C23C22122.0°119.9°
C24C23H7119.0°120.0°
C07C06C15115.2°119.8°
C07C06N05121.2°120.1°
C06C07H4119.1°120.1°
N20C21C22119.4°120.0°
C21N20C18124.4°120.0°
C21N20H17117.8°120.0°
C21C22C23122.1°120.1°
C21C22H2119.0°120.0°
C14C15C06121.6°119.9°
C14C15H1119.2°120.0°
C15C14H6117.8°120.0°
N20C18N17119.3°120.0°
N20C18O19123.4°120.0°
C18N20H17117.8°120.0°
C27C26H3120.5°120.5°
C26C27H8118.4°119.4°
C15C06N05123.6°120.1°
C06C15H1119.2°120.0°
C06N05C04129.1°120.0°
C06N05H14115.4°120.0°
N17N16C04104.5°107.0°
N16N17C18120.3°126.9°
N16N17C02107.9°106.2°
N16C04N05128.0°125.4°
N16C04N03113.0°109.2°
C23C22H2119.0°119.9°
C22C23H7119.0°120.0°
N17C18O19117.3°120.0°
C18N17C02131.6°126.9°
N05C04N03119.0°125.4°
C04N05H14115.5°120.0°
N17C02N03110.2°107.8°
N17C02N01124.7°126.1°
C04N03C02104.3°109.7°
N03C02N01125.1°126.1°
C02N01H12109.5°120.0°
C02N01H13109.5°120.1°
H12N01H13109.4°120.0°
H15N11H16109.4°120.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O32C30O31C29177.8°179.9°
O32C30C29C3328.9°0.1°
O32C30C29N28152.4°179.7°
O32C30O31H180.0°0.0°
O31C30C29C33149.2°180.0°
O31C30C29N2829.5°0.2°
N11S10O13O12118.0°122.9°
N11S10O13C09117.3°114.1°
N11S10O12C09117.2°114.1°
N11S10C09C0842.7°90.1°
N11S10C09C14139.4°89.8°
S10N11H15H16120.0°179.9°
C30C29C33N28178.6°179.8°
C30C29C33C25178.6°180.0°
C30C29N28C27179.1°179.9°
C30C29C33H91.4°0.2°
C29C30O31H18177.8°179.9°
C29C33C25H9180.0°179.8°
C33C29N28C270.5°0.3°
C29C33C25C24180.0°180.0°
C29C33C25C260.9°0.1°
N28C29C33C250.0°0.2°
C29N28C27C260.1°0.1°
C29N28C27H8179.9°180.0°
N28C29C33H9180.0°180.0°
C35C34C24H10180.0°180.0°
C34C35C21H11180.0°179.9°
C35C34C24C25179.5°180.0°
C35C34C24C230.6°0.3°
C34C35C21N20178.2°180.0°
C34C35C21C221.6°0.2°
C34C24C25C3345.3°0.2°
C24C34C35C210.5°0.0°
C34C24C25C23178.9°179.8°
C34C24C25C26135.6°179.7°
C34C24C23C220.6°0.2°
C34C24C23H7179.3°179.8°
C24C34C35H11179.5°180.0°
C33C25C24C26179.1°179.9°
C33C25C24C23135.8°180.0°
C33C25C26C271.2°0.3°
C33C25C26H3178.8°180.0°
O13S10O12C09124.7°123.0°
O13S10C09C08157.7°23.5°
O13S10C09C1424.5°156.6°
O13S10N11H15180.0°113.5°
O13S10N11H1660.0°66.4°
O12S10C09C0872.1°156.4°
O12S10C09C14105.7°23.7°
O12S10N11H1553.8°113.6°
O12S10N11H16173.8°66.5°
S10C09C08C14178.0°179.8°
S10C09C08C07179.4°180.0°
S10C09C14C15179.9°179.7°
S10C09C08H50.6°0.2°
S10C09C14H60.1°0.2°
C09S10N11H1563.1°0.1°
C09S10N11H1656.9°180.0°
C35C21N20C22176.6°179.8°
C35C21N20C18132.9°34.9°
C35C21C22C231.6°0.3°
C35C21C22H2178.4°179.8°
C21C35C34H10179.5°180.0°
C35C21N20H1747.1°145.1°
C09C08C07H5180.0°179.8°
C09C08C07C060.8°0.0°
C08C09C14C151.9°0.5°
C09C08C07H4179.2°180.0°
C08C09C14H6178.2°180.0°
C07C08C09C141.4°0.2°
C08C07C06H4180.0°180.0°
C08C07C06C150.6°0.1°
C08C07C06N05179.5°180.0°
C09C14C15H6180.0°179.6°
C09C14C15C061.8°0.5°
C09C14C15H1178.2°179.8°
C14C09C08H5178.6°180.0°
N28C27C26C250.8°0.3°
N28C27C26H8180.0°180.0°
N28C27C26H3179.2°179.9°
C24C25C26C27179.7°179.8°
C25C24C23C22179.6°180.0°
C24C25C26H30.3°0.1°
C25C24C23H70.4°0.0°
C24C25C33H90.0°0.2°
C25C24C34H100.5°0.0°
C26C25C24C2343.3°0.0°
C25C26C27H3180.0°179.7°
C25C26C27H8179.2°179.7°
C26C25C33H9179.1°179.7°
C24C23C22C210.5°0.0°
C24C23C22H7180.0°180.0°
C24C23C22H2179.5°180.0°
C23C24C34H10179.4°179.8°
C07C06C15C141.0°0.3°
C07C06C15N05179.9°179.9°
C07C06N05C0416.2°146.0°
C07C06C15H1179.0°180.0°
C06C07C08H5179.2°179.8°
C07C06N05H14163.8°34.0°
C21N20C18H17180.0°180.0°
N20C21C22C23178.3°180.0°
C21N20C18N17175.4°174.3°
C21N20C18O192.1°5.7°
N20C21C22H21.7°0.0°
N20C21C35H111.8°0.0°
C22C21N20C1850.6°145.4°
C21C22C23H2180.0°180.0°
C21C22C23H7179.5°180.0°
C22C21C35H11178.4°179.7°
C22C21N20H17129.4°34.6°
C14C15C06H1180.0°179.8°
C14C15C06N05179.1°179.8°
N20C18N17N166.4°0.1°
N20C18N17O19177.7°180.0°
N20C18N17C02179.3°180.0°
C15C06N05C04163.9°34.1°
C15C06C07H4179.4°180.0°
C06C15C14H6178.2°180.0°
C15C06N05H1416.1°145.9°
C06N05C04N161.6°174.2°
C06N05C04H14180.0°180.0°
C06N05C04N03178.8°5.3°
N05C06C15H10.9°0.0°
N05C06C07H40.5°0.1°
N16N17C18C02174.3°179.9°
N16N17C18O19171.3°179.9°
N17N16C04N05178.6°180.0°
N17N16C04N031.0°0.4°
N16N17C02N032.2°0.0°
N16N17C02N01179.3°179.8°
C04N16N17C18177.4°179.7°
N16C04N05N03179.6°179.5°
C04N16N17C021.9°0.2°
N16C04N03C020.3°0.4°
N16C04N05H14178.4°5.8°
C18N17C02N03177.0°179.9°
C18N17C02N014.5°0.3°
N17C18N20H174.6°5.6°
O19C18N17C023.0°0.0°
O19C18N20H17177.9°174.4°
N05C04N03C02180.0°180.0°
N17C02N03C041.5°0.2°
N17C02N03N01178.5°179.7°
N17C02N01H12178.2°179.7°
N17C02N01H1358.3°0.3°
C04N03C02N01180.0°180.0°
N03C04N05H141.2°174.7°
N03C02N01H120.0°0.0°
N03C02N01H13120.0°180.0°
C02N01H12H13120.0°180.0°
H1C15C14H61.8°0.2°
H2C22C23H70.4°0.0°
H3C26C27H80.8°0.1°
H4C07C08H50.8°0.2°
H10C34C35H110.5°0.1°

250059

PDB entries from 2026-03-04

PDB statisticsPDBj update infoContact PDBjnumon