Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

DV9

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
NCAsing1.47Å1.48Å
OCdoub1.21Å1.19Å
CACsing1.51Å1.53Å
CACBsing1.53Å1.54Å
CBCGsing1.53Å1.54Å
OE1CDdoub1.21Å1.18Å
CGCDsing1.51Å1.54Å
CDC45sing1.51Å1.54Å
O14P01sing1.61Å1.65Å
C45F01sing1.40Å1.35Å
C45P01sing1.82Å1.86Å
C45F02sing1.40Å1.37Å
P01O15doub1.48Å1.46Å
P01O16sing1.61Å1.46Å
CAHAsing1.09Å1.10Å
CBH42sing1.09Å1.10Å
CBH41sing1.09Å1.10Å
CGH43sing1.09Å1.10Å
CGH44sing1.09Å1.10Å
NH2sing1.01Å1.00Å
NHsing1.01Å1.00Å
O14H59sing0.97Å0.95Å
O16H4sing0.97Å0.95Å
COXTsing1.34Å1.46Å
OXTHXTsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
NCAC105.2°109.5°
NCACB113.0°109.5°
NCAHA109.7°109.4°
CANH2109.5°111.0°
CANH109.5°111.0°
OCCA121.3°120.0°
OCOXT119.5°120.0°
CCACB110.9°109.5°
CCAHA109.0°109.5°
CACOXT119.2°120.0°
CACBCG111.4°109.5°
CBCAHA108.9°109.5°
CACBH42109.0°109.5°
CACBH41109.0°109.5°
CBCGCD113.3°109.5°
CGCBH42109.0°109.5°
CGCBH41109.0°109.4°
CBCGH43108.5°109.5°
CBCGH44108.5°109.4°
OE1CDCG119.6°120.0°
OE1CDC45118.6°120.0°
CGCDC45121.8°120.0°
CDCGH43108.5°109.5°
CDCGH44108.5°109.5°
CDC45F01107.9°109.5°
CDC45P01112.6°109.5°
CDC45F02110.8°109.5°
O14P01C45110.2°109.5°
O14P01O15112.2°109.5°
O14P01O16110.2°109.5°
P01O14H59109.5°114.0°
F01C45P01105.3°109.4°
F01C45F02109.5°109.4°
P01C45F02110.5°109.5°
C45P01O15113.0°109.5°
C45P01O16109.6°109.4°
O15P01O16101.2°109.5°
P01O16H4109.5°114.0°
H42CBH41109.5°109.5°
H43CGH44109.5°109.4°
H2NH109.4°111.0°
COXTHXT109.5°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
NCACO120.6°20.1°
NCACCB122.5°120.0°
NCACHA117.6°120.0°
NCACBHA122.2°119.9°
NCACBCG175.7°65.0°
NCACBH4255.4°55.0°
NCACBH4164.1°175.0°
CANH2H120.0°124.0°
NCACOXT55.9°160.0°
OCCAOXT176.5°179.9°
OCCACB116.9°100.0°
OCCAHA3.0°140.0°
OCOXTHXT0.0°0.1°
CCACBHA119.9°120.0°
CCACBCG66.5°175.0°
CCACBH42173.2°65.0°
CCACBH4153.8°55.0°
CCANH2180.0°60.0°
CCANH60.0°176.0°
CACOXTHXT176.5°180.0°
CACBCGH42120.3°120.0°
CACBCGH41120.3°120.0°
CACBCGCD107.4°180.0°
CACBH42H41119.1°120.0°
CACBCGH43132.1°59.9°
CACBCGH4413.1°60.0°
CBCANH258.9°60.0°
CBCANH178.9°63.9°
CBCACOXT66.6°80.0°
CBCGCDOE163.5°0.0°
CBCGCDH43120.5°120.0°
CBCGCDH44120.6°120.0°
CBCGCDC45116.6°180.0°
CGCBCAHA53.5°55.0°
CGCBH42H41119.1°120.0°
CBCGH43H44118.3°119.9°
OE1CDCGC45179.9°180.0°
OE1CDC45F0176.2°120.0°
OE1CDC45P0139.5°0.0°
OE1CDC45F02163.9°120.0°
OE1CDCGH43175.9°120.0°
OE1CDCGH4457.1°120.0°
CGCDC45F01103.9°60.0°
CGCDC45P01140.4°180.0°
CGCDC45F0216.0°60.0°
CDCGCBH4212.9°60.0°
CDCGCBH41132.3°60.0°
CDCGH43H44118.2°120.0°
CDC45P01O1427.1°60.0°
CDC45F01P01120.4°120.0°
CDC45F01F02120.7°120.0°
CDC45P01F02124.5°120.1°
CDC45P01O1599.3°180.0°
CDC45P01O16148.6°60.1°
C45CDCGH434.0°60.0°
C45CDCGH44122.8°60.0°
O14P01C45F0190.2°60.0°
O14P01C45O15126.4°120.0°
O14P01C45O16121.5°120.0°
O14P01C45F02151.6°180.0°
O14P01O15O16117.5°120.0°
O14P01O16H4118.9°60.0°
F01C45P01F02118.2°119.9°
F01C45P01O15143.4°60.0°
F01C45P01O1631.3°180.0°
C45P01O15O16117.1°119.9°
C45P01O14H59126.9°60.0°
C45P01O16H4119.6°180.0°
F02C45P01O1525.2°59.9°
F02C45P01O1686.9°60.0°
O15P01O14H590.0°180.0°
O15P01O16H40.0°60.1°
O16P01O14H59112.0°59.9°
HACACBH4266.8°175.0°
HACACBH41173.7°65.0°
HACANH262.8°180.0°
HACANH57.1°56.1°
HACACOXT173.5°40.1°
H42CBCGH43107.7°179.9°
H42CBCGH44133.4°60.0°
H41CBCGH4311.8°60.1°
H41CBCGH44107.1°180.0°

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon