Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

DV8

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
NAPCALdoub1.29Å1.34ÅAromatic
NAPCAWsing1.31Å1.35ÅAromatic
CALSASsing1.71Å1.65ÅAromatic
CABCAWsing1.51Å1.54Å
CAWCAZdoub1.35Å1.35ÅAromatic
SASCAZsing1.76Å1.66ÅAromatic
CAZCAYsing1.48Å1.35Å
CAYCAJdoub1.40Å1.40ÅAromatic
CAYCAKsing1.39Å1.40ÅAromatic
CAJCAHsing1.38Å1.40ÅAromatic
CAKCAIdoub1.38Å1.40ÅAromatic
CAHCAXdoub1.38Å1.40ÅAromatic
CAICAXsing1.38Å1.40ÅAromatic
CAXCAMsing1.51Å1.42Å
CAMNAQsing1.46Å1.47Å
NAQCAUsing1.35Å1.36Å
CANCBCsing1.54Å1.54Å
CANCBAsing1.55Å1.51Å
CAUSAFdoub1.60Å1.68Å
CAUCBCsing1.51Å1.42Å
CBCNBDsing1.47Å1.54Å
CBAOAEsing1.43Å1.44Å
CBACAOsing1.55Å1.51Å
NBDCAOsing1.47Å1.50Å
NBDCAVsing1.35Å1.36Å
SAGCAVdoub1.60Å1.65Å
CAVCBBsing1.51Å1.56Å
CBBCACsing1.53Å1.53Å
CBBNARsing1.47Å1.48Å
NARCATsing1.35Å1.35Å
OADCATdoub1.21Å1.23Å
CATCAAsing1.51Å1.53Å
CAAH1sing1.09Å1.10Å
CAAH2sing1.09Å1.10Å
CAAH3sing1.09Å1.10Å
NARH4sing0.97Å1.00Å
CBBH5sing1.09Å1.10Å
CACH6sing1.09Å1.10Å
CACH7sing1.09Å1.10Å
CACH8sing1.09Å1.10Å
CAOH9sing1.09Å1.10Å
CAOH10sing1.09Å1.10Å
CBAH11sing1.09Å1.10Å
OAEH12sing0.97Å0.95Å
CANH13sing1.09Å1.10Å
CANH14sing1.09Å1.10Å
CBCH15sing1.09Å1.10Å
NAQH16sing0.97Å1.00Å
CAMH17sing1.09Å1.10Å
CAMH18sing1.09Å1.10Å
CAIH19sing1.08Å1.08Å
CAKH20sing1.08Å1.08Å
CAHH21sing1.08Å1.08Å
CAJH22sing1.08Å1.08Å
CALH23sing1.08Å1.08Å
CABH24sing1.09Å1.10Å
CABH25sing1.09Å1.10Å
CABH26sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CALNAPCAW114.6°117.3°
NAPCALSAS107.6°110.3°
NAPCALH23126.2°124.8°
NAPCAWCAB119.6°122.8°
NAPCAWCAZ114.4°114.2°
CALSASCAZ96.4°90.4°
SASCALH23126.2°124.9°
CABCAWCAZ126.0°122.9°
CAWCABH24109.5°109.5°
CAWCABH25109.5°109.4°
CAWCABH26109.5°109.5°
CAWCAZSAS106.9°107.8°
CAWCAZCAY129.1°126.1°
SASCAZCAY124.0°126.1°
CAZCAYCAJ122.2°120.1°
CAZCAYCAK120.0°120.1°
CAJCAYCAK117.8°119.7°
CAYCAJCAH120.8°119.8°
CAYCAJH22119.6°120.1°
CAYCAKCAI121.5°119.9°
CAYCAKH20119.3°120.1°
CAJCAHCAX121.5°120.2°
CAJCAHH21119.3°119.9°
CAHCAJH22119.6°120.1°
CAKCAICAX120.9°120.1°
CAKCAIH19119.5°120.0°
CAICAKH20119.2°120.1°
CAHCAXCAI117.5°120.2°
CAHCAXCAM118.8°119.9°
CAXCAHH21119.2°119.9°
CAICAXCAM123.7°119.9°
CAXCAIH19119.6°119.9°
CAXCAMNAQ110.5°109.5°
CAXCAMH17109.2°109.5°
CAXCAMH18109.2°109.5°
CAMNAQCAU123.2°120.0°
CAMNAQH16118.4°120.0°
NAQCAMH17109.2°109.5°
NAQCAMH18109.2°109.5°
NAQCAUSAF123.0°120.0°
NAQCAUCBC118.4°120.0°
CAUNAQH16118.4°120.0°
CBCCANCBA105.3°103.0°
CANCBCCAU108.4°109.9°
CANCBCNBD104.6°107.3°
CBCCANH13110.5°110.7°
CBCCANH14110.5°110.7°
CANCBCH15108.6°109.9°
CANCBAOAE110.0°111.0°
CANCBACAO103.2°101.6°
CANCBAH11110.8°111.1°
CBACANH13110.5°111.0°
CBACANH14110.5°110.4°
SAFCAUCBC118.6°120.0°
CAUCBCNBD116.1°110.2°
CAUCBCH15110.2°110.0°
CBCNBDCAO106.8°108.7°
CBCNBDCAV126.7°125.6°
NBDCBCH15108.6°109.6°
OAECBACAO109.6°111.0°
OAECBAH11111.9°110.9°
CBAOAEH12109.5°114.0°
CBACAONBD104.4°104.8°
CBACAOH9110.7°110.4°
CBACAOH10110.7°110.5°
CAOCBAH11110.9°111.0°
CAONBDCAV126.4°125.7°
NBDCAOH9110.7°110.4°
NBDCAOH10110.7°110.4°
NBDCAVSAG122.1°120.0°
NBDCAVCBB120.4°120.0°
SAGCAVCBB117.3°120.0°
CAVCBBCAC108.0°109.5°
CAVCBBNAR112.0°109.4°
CAVCBBH5108.8°109.5°
CACCBBNAR109.0°109.4°
CACCBBH5109.1°109.5°
CBBCACH6109.5°109.5°
CBBCACH7109.5°109.5°
CBBCACH8109.5°109.5°
CBBNARCAT122.5°120.0°
CBBNARH4118.8°120.0°
NARCBBH5109.9°109.5°
NARCATOAD125.1°120.0°
NARCATCAA114.7°120.0°
CATNARH4118.7°120.0°
OADCATCAA120.2°120.0°
CATCAAH1109.5°109.5°
CATCAAH2109.5°109.5°
CATCAAH3109.5°109.5°
H1CAAH2109.4°109.5°
H1CAAH3109.5°109.4°
H2CAAH3109.5°109.4°
H6CACH7109.5°109.4°
H6CACH8109.5°109.5°
H7CACH8109.4°109.5°
H9CAOH10109.5°110.3°
H13CANH14109.5°110.8°
H17CAMH18109.5°109.4°
H24CABH25109.5°109.5°
H24CABH26109.5°109.5°
H25CABH26109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
NAPCALSASH23180.0°180.0°
CALNAPCAWCAB179.8°179.9°
CALNAPCAWCAZ0.4°0.5°
NAPCALSASCAZ0.3°0.0°
CAWNAPCALSAS0.0°0.3°
NAPCAWCABCAZ179.8°179.5°
NAPCAWCAZSAS0.6°0.4°
NAPCAWCAZCAY179.9°179.8°
CAWNAPCALH23180.0°179.7°
NAPCAWCABH240.0°95.3°
NAPCAWCABH25120.0°144.8°
NAPCAWCABH26120.0°24.8°
CALSASCAZCAW0.5°0.2°
CALSASCAZCAY179.8°180.0°
CABCAWCAZSAS179.6°180.0°
CABCAWCAZCAY0.3°0.2°
CAWCABH24H25120.0°120.0°
CAWCABH24H26120.0°120.1°
CAWCABH25H26120.0°120.0°
CAWCAZSASCAY179.3°179.7°
CAWCAZCAYCAJ46.3°47.5°
CAWCAZCAYCAK134.9°132.7°
CAZCAWCABH24179.7°85.2°
CAZCAWCABH2559.7°34.8°
CAZCAWCABH2660.2°154.8°
SASCAZCAYCAJ134.6°132.2°
SASCAZCAYCAK44.3°47.6°
CAZSASCALH23179.7°180.0°
CAZCAYCAJCAK178.9°179.7°
CAZCAYCAJCAH180.0°180.0°
CAZCAYCAKCAI180.0°180.0°
CAZCAYCAKH200.0°0.0°
CAZCAYCAJH220.0°0.0°
CAYCAJCAHH22180.0°180.0°
CAJCAYCAKCAI1.1°0.3°
CAYCAJCAHCAX0.8°0.0°
CAJCAYCAKH20178.9°179.8°
CAYCAJCAHH21179.1°180.0°
CAKCAYCAJCAH1.1°0.3°
CAYCAKCAIH20180.0°180.0°
CAYCAKCAICAX0.9°0.0°
CAYCAKCAIH19179.1°180.0°
CAKCAYCAJH22178.9°179.7°
CAJCAHCAXH21180.0°180.0°
CAJCAHCAXCAI0.6°0.2°
CAJCAHCAXCAM179.9°180.0°
CAKCAICAXCAH0.6°0.2°
CAKCAICAXH19180.0°180.0°
CAKCAICAXCAM179.9°180.0°
CAHCAXCAICAM179.5°179.7°
CAHCAXCAMNAQ156.2°90.3°
CAHCAXCAMH1783.6°149.7°
CAHCAXCAMH1836.0°29.8°
CAHCAXCAIH19179.4°179.8°
CAXCAHCAJH22179.2°180.0°
CAICAXCAMNAQ24.3°90.0°
CAICAXCAMH1795.9°30.0°
CAICAXCAMH18144.5°150.0°
CAXCAICAKH20179.1°180.0°
CAICAXCAHH21179.4°179.8°
CAXCAMNAQH17120.2°120.0°
CAXCAMNAQH18120.2°120.0°
CAXCAMNAQCAU96.6°180.0°
CAXCAMNAQH1683.4°0.0°
CAXCAMH17H18119.5°120.0°
CAMCAXCAIH190.1°0.0°
CAMCAXCAHH210.1°0.0°
CAMNAQCAUH16180.0°179.9°
CAMNAQCAUSAF0.8°0.0°
CAMNAQCAUCBC178.3°180.0°
NAQCAMH17H18119.5°120.0°
NAQCAUCBCCAN84.3°66.5°
NAQCAUSAFCBC177.5°180.0°
NAQCAUCBCNBD158.4°175.5°
NAQCAUCBCH1534.4°54.6°
CAUNAQCAMH17143.2°60.0°
CAUNAQCAMH1823.6°60.0°
CBCCANCBAH13119.3°118.5°
CBCCANCBAH14119.3°118.3°
CANCBCCAUSAF93.3°113.6°
CANCBCCAUNBD117.3°118.0°
CANCBCCAUH15118.7°121.1°
CANCBCNBDH15115.8°119.3°
CBCCANCBAOAE80.5°82.7°
CBCCANCBACAO36.3°35.3°
CANCBCNBDCAO5.1°1.4°
CANCBCNBDCAV170.8°178.9°
CBCCANCBAH11155.1°153.4°
CBCCANH13H14121.9°123.2°
CBACANCBCCAU143.8°141.6°
CBACANCBCNBD19.3°21.9°
CANCBAOAECAO112.8°112.2°
CANCBAOAEH11123.7°124.0°
CANCBACAOH11118.8°118.1°
CANCBACAONBD39.5°37.0°
CANCBACAOH979.7°155.9°
CANCBACAOH10158.7°81.9°
CANCBAOAEH12180.0°173.7°
CBACANH13H14121.9°123.0°
CBACANCBCH1596.5°97.2°
SAFCAUCBCNBD24.0°4.4°
SAFCAUCBCH15148.0°125.4°
SAFCAUNAQH16179.2°180.0°
CAUCBCNBDH15124.8°121.2°
CAUCBCNBDCAO114.3°118.2°
CAUCBCNBDCAV69.8°61.5°
CAUCBCCANH1324.4°99.7°
CAUCBCCANH1496.9°23.6°
CBCCAUNAQH161.7°0.1°
CBCNBDCAOCBA27.6°24.3°
CBCNBDCAOCAV175.9°179.7°
CBCNBDCAVSAG3.9°0.3°
CBCNBDCAVCBB179.4°179.7°
CBCNBDCAOH991.6°143.2°
CBCNBDCAOH10146.8°94.6°
NBDCBCCANH13100.1°140.6°
NBDCBCCANH14138.6°96.2°
OAECBACAOH11124.1°123.7°
OAECBACAONBD77.6°81.1°
OAECBACAOH9163.2°37.7°
OAECBACAOH1041.5°160.0°
OAECBACANH13160.1°35.7°
OAECBACANH1438.8°159.0°
CBACAONBDH9119.2°118.9°
CBACAONBDH10119.2°118.9°
CBACAONBDCAV148.3°156.0°
CBACAOH9H10122.4°122.4°
CAOCBAOAEH1267.2°61.4°
CAOCBACANH1383.0°153.8°
CAOCBACANH14155.7°83.0°
CAONBDCAVSAG179.0°180.0°
CAONBDCAVCBB5.5°0.1°
NBDCAOH9H10122.3°122.2°
NBDCAOCBAH11158.3°155.1°
CAONBDCBCH15120.9°120.7°
NBDCAVSAGCBB175.7°179.9°
NBDCAVCBBCAC81.3°65.1°
NBDCAVCBBNAR158.7°175.0°
NBDCAVCBBH537.0°55.0°
CAVNBDCAOH992.5°37.1°
CAVNBDCAOH1029.1°85.1°
CAVNBDCBCH1555.0°59.6°
SAGCAVCBBCAC94.4°115.0°
SAGCAVCBBNAR25.6°4.9°
SAGCAVCBBH5147.3°124.9°
CAVCBBCACNAR121.9°119.9°
CAVCBBCACH5118.1°120.1°
CAVCBBNARH5121.1°120.0°
CAVCBBNARCAT84.0°155.0°
CAVCBBNARH496.0°24.9°
CAVCBBCACH6180.0°59.9°
CAVCBBCACH760.0°60.0°
CAVCBBCACH860.0°180.0°
CACCBBNARH5119.5°120.0°
CACCBBNARCAT156.6°85.0°
CACCBBNARH423.4°95.0°
CBBCACH6H7120.0°120.0°
CBBCACH6H8120.0°120.0°
CBBCACH7H8120.0°120.0°
CBBNARCATH4180.0°179.9°
CBBNARCATOAD0.0°0.1°
CBBNARCATCAA179.7°180.0°
NARCBBCACH658.1°60.0°
NARCBBCACH761.9°180.0°
NARCBBCACH8178.1°60.0°
NARCATOADCAA179.7°179.9°
NARCATCAAH1179.7°179.9°
NARCATCAAH259.7°60.0°
NARCATCAAH360.3°59.9°
CATNARCBBH537.1°35.0°
OADCATCAAH10.0°0.0°
OADCATCAAH2120.0°120.1°
OADCATCAAH3120.0°120.0°
OADCATNARH4180.0°180.0°
CATCAAH1H2120.0°120.0°
CATCAAH1H3120.0°120.0°
CATCAAH2H3120.0°120.0°
CAACATNARH40.3°0.1°
H1CAAH2H3120.0°119.9°
H4NARCBBH5142.9°145.0°
H5CBBCACH661.9°180.0°
H5CBBCACH7178.1°60.0°
H5CBBCACH858.2°60.0°
H6CACH7H8120.0°120.0°
H9CAOCBAH1139.1°86.0°
H10CAOCBAH1182.5°36.3°
H11CBAOAEH1256.3°62.4°
H11CBACANH1335.8°88.1°
H11CBACANH1485.5°35.1°
H13CANCBCH15144.2°21.5°
H14CANCBCH1522.8°144.7°
H16NAQCAMH1736.8°120.0°
H16NAQCAMH18156.5°120.1°
H19CAICAKH200.9°0.0°
H21CAHCAJH220.9°0.0°
H24CABH25H26120.0°120.0°

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon