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DU4

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.34Å1.41Å
N1C6sing1.37Å1.41Å
N1C1'sing1.46Å1.48Å
C2O2doub1.22Å1.23Å
C2N3sing1.35Å1.39Å
N3C4sing1.35Å1.40Å
C4O4doub1.22Å1.23Å
C4C5sing1.42Å1.40Å
C5C6doub1.35Å1.40Å
C1'C2'sing1.54Å1.53Å
C1'O4'sing1.44Å1.46Å
C17C18sing1.51Å1.55Å
C17C24sing1.51Å1.54Å
C17N5'sing1.47Å1.49Å
C18C19doub1.38Å1.40ÅAromatic
C18C23sing1.38Å1.40ÅAromatic
C19C20sing1.38Å1.40ÅAromatic
C2'C3'sing1.55Å1.52Å
C20C21doub1.38Å1.40ÅAromatic
C21C22sing1.38Å1.39ÅAromatic
C22C23doub1.38Å1.40ÅAromatic
C24C25doub1.38Å1.40ÅAromatic
C24C29sing1.38Å1.40ÅAromatic
C25C26sing1.38Å1.40ÅAromatic
C26C27doub1.38Å1.39ÅAromatic
C27C28sing1.38Å1.40ÅAromatic
C28C29doub1.38Å1.39ÅAromatic
C3'O3'sing1.43Å1.43Å
C3'C4'sing1.55Å1.53Å
C4'O4'sing1.44Å1.44Å
C4'C5'sing1.53Å1.56Å
C41N5'sing1.47Å1.48Å
C5'N5'sing1.47Å1.48Å
N3HN3sing0.97Å1.00Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
C1'H1'sing1.09Å1.10Å
C17H17sing1.09Å1.10Å
C19H19sing1.08Å1.08Å
C2'H2'sing1.09Å1.10Å
C2'H2'Asing1.09Å1.10Å
C20H20sing1.08Å1.08Å
C21H21sing1.08Å1.08Å
C22H22sing1.08Å1.08Å
C23H23sing1.08Å1.08Å
C25H25sing1.08Å1.08Å
C26H26sing1.08Å1.08Å
C27H27sing1.08Å1.08Å
C28H28sing1.08Å1.08Å
C29H29sing1.08Å1.08Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
C41H41sing1.09Å1.10Å
C41H41Asing1.09Å1.10Å
C41H41Bsing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6120.1°120.7°
C2N1C1'118.9°119.7°
N1C2O2122.8°119.6°
N1C2N3118.7°120.9°
C6N1C1'121.0°119.7°
N1C6C5120.6°119.6°
N1C6H6119.7°120.2°
N1C1'C2'118.0°109.9°
N1C1'O4'102.6°109.9°
N1C1'H1'107.9°109.9°
O2C2N3118.5°119.5°
C2N3C4121.0°120.3°
C2N3HN3119.5°119.9°
N3C4O4118.7°120.3°
N3C4C5120.6°119.4°
C4N3HN3119.5°119.8°
O4C4C5120.7°120.3°
C4C5C6118.9°119.2°
C4C5H5120.5°120.5°
C6C5H5120.5°120.4°
C5C6H6119.7°120.2°
C2'C1'O4'107.1°107.3°
C1'C2'C3'103.1°104.2°
C2'C1'H1'103.4°109.9°
C1'C2'H2'111.7°110.5°
C1'C2'H2'A111.7°110.5°
C1'O4'C4'109.6°107.0°
O4'C1'H1'118.6°110.0°
C18C17C24107.5°109.5°
C18C17N5'112.5°109.5°
C17C18C19119.2°120.0°
C17C18C23121.4°120.0°
C18C17H17110.7°109.5°
C24C17N5'114.4°109.5°
C17C24C25118.0°120.0°
C17C24C29122.3°120.0°
C24C17H17108.6°109.5°
C17N5'C41110.8°111.0°
C17N5'C5'113.9°111.0°
N5'C17H17103.0°109.5°
C19C18C23119.4°120.0°
C18C19C20120.5°120.0°
C18C19H19119.8°120.0°
C18C23C22120.1°120.0°
C18C23H23120.0°119.9°
C19C20C21119.9°120.0°
C20C19H19119.8°120.0°
C19C20H20120.1°120.0°
C2'C3'O3'109.3°110.9°
C2'C3'C4'103.8°102.1°
C3'C2'H2'111.7°110.5°
C3'C2'H2'A111.7°110.5°
C2'C3'H3'113.4°110.9°
C20C21C22119.9°120.0°
C21C20H20120.1°120.0°
C20C21H21120.0°120.0°
C21C22C23120.2°120.0°
C22C21H21120.1°120.0°
C21C22H22119.9°120.0°
C23C22H22119.9°120.0°
C22C23H23119.9°120.1°
C25C24C29119.7°120.0°
C24C25C26120.4°120.0°
C24C25H25119.8°120.0°
C24C29C28119.8°120.0°
C24C29H29120.1°119.9°
C25C26C27119.8°120.0°
C26C25H25119.8°120.0°
C25C26H26120.1°119.9°
C26C27C28120.0°120.0°
C27C26H26120.1°120.0°
C26C27H27120.0°120.0°
C27C28C29120.3°120.0°
C28C27H27120.0°119.9°
C27C28H28119.9°120.0°
C29C28H28119.8°120.0°
C28C29H29120.1°120.1°
O3'C3'C4'110.0°110.9°
O3'C3'H3'107.6°110.8°
C3'O3'HO3'109.5°114.0°
C3'C4'O4'106.2°103.5°
C3'C4'C5'114.0°110.6°
C4'C3'H3'112.7°110.9°
C3'C4'H4'108.0°110.6°
O4'C4'C5'107.2°110.6°
O4'C4'H4'114.7°110.7°
C4'C5'N5'110.0°109.5°
C5'C4'H4'106.9°110.7°
C4'C5'H5'109.3°109.5°
C4'C5'H5'A109.3°109.5°
C41N5'C5'106.6°111.0°
N5'C41H41109.5°109.5°
N5'C41H41A109.5°109.5°
N5'C41H41B109.5°109.5°
N5'C5'H5'109.3°109.4°
N5'C5'H5'A109.3°109.5°
H2'C2'H2'A107.2°110.5°
H41C41H41A109.5°109.4°
H41C41H41B109.5°109.5°
H41AC41H41B109.5°109.4°
H5'C5'H5'A109.7°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6C1'179.2°179.7°
N1C2O2N3179.7°180.0°
N1C2N3C40.5°0.0°
C2N1C6C50.7°0.0°
C2N1C1'C2'163.9°115.0°
C2N1C1'O4'78.6°127.2°
N1C2N3HN3179.4°179.9°
C2N1C6H6179.3°180.0°
C2N1C1'H1'47.4°6.0°
C6N1C2O2179.8°180.0°
C6N1C2N30.0°0.0°
N1C6C5C40.8°0.0°
N1C6C5H6180.0°180.0°
C6N1C1'C2'16.8°65.3°
C6N1C1'O4'100.6°52.5°
N1C6C5H5179.2°179.9°
C6N1C1'H1'133.4°173.7°
C1'N1C2O20.5°0.3°
C1'N1C2N3179.2°179.7°
C1'N1C6C5178.5°179.7°
N1C1'C2'O4'115.0°119.4°
N1C1'C2'H1'119.0°121.0°
N1C1'O4'H1'118.7°121.1°
N1C1'C2'C3'92.1°121.5°
N1C1'O4'C4'120.0°146.0°
C1'N1C6H61.5°0.3°
N1C1'C2'H2'147.9°119.9°
N1C1'C2'H2'A27.9°2.8°
O2C2N3C4179.2°180.0°
O2C2N3HN30.8°0.0°
C2N3C4HN3180.0°179.9°
C2N3C4O4179.9°179.9°
C2N3C4C50.4°0.0°
N3C4O4C5179.5°179.9°
N3C4C5C60.2°0.0°
N3C4C5H5179.8°180.0°
O4C4C5C6179.3°179.9°
O4C4N3HN30.0°0.1°
O4C4C5H50.7°0.1°
C4C5C6H5180.0°180.0°
C5C4N3HN3179.5°180.0°
C4C5C6H6179.2°180.0°
C2'C1'O4'H1'116.4°119.5°
C1'C2'C3'H2'120.0°118.6°
C1'C2'C3'H2'A120.0°118.7°
C1'C2'C3'O3'148.5°139.1°
C1'C2'C3'C4'31.2°20.9°
C2'C1'O4'C4'5.0°26.5°
C1'C2'H2'H2'A122.6°122.6°
C1'C2'C3'H3'91.5°97.3°
O4'C1'C2'C3'22.9°2.0°
C1'O4'C4'C3'15.1°40.1°
C1'O4'C4'C5'137.4°158.5°
O4'C1'C2'H2'97.1°120.7°
O4'C1'C2'H2'A142.9°116.7°
C1'O4'C4'H4'104.0°78.4°
C18C17C24N5'125.8°120.0°
C18C17C24H17119.7°120.0°
C18C17N5'H17119.2°120.0°
C17C18C19C23179.6°179.7°
C17C18C19C20179.9°180.0°
C17C18C23C22179.9°179.8°
C18C17C24C2588.4°106.2°
C18C17C24C2990.4°73.6°
C18C17N5'C4153.2°177.6°
C18C17N5'C5'173.4°58.4°
C17C18C19H190.1°0.0°
C17C18C23H230.1°0.0°
C24C17N5'H17117.7°120.0°
C24C17C18C19116.1°104.5°
C24C17C18C2363.5°75.8°
C17C24C25C29178.8°179.7°
C17C24C25C26179.4°180.0°
C17C24C29C28179.4°179.8°
C24C17N5'C41176.3°57.6°
C24C17N5'C5'63.5°178.4°
C17C24C25H250.6°0.0°
C17C24C29H290.6°0.1°
N5'C17C18C19117.0°135.5°
N5'C17C18C2363.3°44.2°
N5'C17C24C25145.9°133.8°
N5'C17C24C2935.4°46.4°
C17N5'C5'C4'152.8°170.0°
C17N5'C41C5'124.5°124.0°
C17N5'C41H41180.0°54.2°
C17N5'C41H41A60.0°174.2°
C17N5'C41H41B60.0°65.9°
C17N5'C5'H5'87.2°70.0°
C17N5'C5'H5'A32.8°49.9°
C18C19C20H19180.0°180.0°
C18C19C20C210.3°0.0°
C19C18C23C220.3°0.5°
C19C18C17H172.3°15.5°
C18C19C20H20179.7°179.9°
C19C18C23H23179.7°179.7°
C23C18C19C200.4°0.3°
C18C23C22C210.1°0.5°
C18C23C22H23180.0°179.8°
C23C18C17H17178.0°164.2°
C23C18C19H19179.6°179.7°
C18C23C22H22180.0°179.7°
C19C20C21H20180.0°180.0°
C19C20C21C220.1°0.0°
C19C20C21H21179.9°180.0°
C2'C3'O3'C4'113.4°112.7°
C2'C3'O3'H3'123.5°123.6°
C2'C3'C4'H3'123.1°118.1°
C2'C3'C4'O4'29.2°37.0°
C2'C3'C4'C5'147.1°155.5°
C3'C2'C1'H1'149.0°117.5°
C3'C2'H2'H2'A122.6°122.6°
C2'C3'O3'HO3'180.0°61.4°
C2'C3'C4'H4'94.2°81.5°
C20C21C22H21180.0°180.0°
C20C21C22C230.1°0.2°
C21C20C19H19179.7°180.0°
C20C21C22H22179.9°180.0°
C21C22C23H22180.0°179.8°
C22C21C20H20180.0°180.0°
C21C22C23H23179.9°179.7°
C23C22C21H21179.9°179.8°
C24C25C26H25180.0°180.0°
C24C25C26C270.1°0.0°
C25C24C29C280.7°0.4°
C25C24C17H1731.4°13.8°
C24C25C26H26179.8°180.0°
C25C24C29H29179.3°179.7°
C29C24C25C260.6°0.2°
C24C29C28C270.1°0.4°
C24C29C28H29180.0°179.9°
C29C24C17H17149.9°166.4°
C29C24C25H25179.4°179.8°
C24C29C28H28179.9°179.7°
C25C26C27H26180.0°179.9°
C25C26C27C280.7°0.0°
C25C26C27H27179.3°179.9°
C26C27C28H27180.0°179.9°
C26C27C28C290.6°0.2°
C27C26C25H25179.9°180.0°
C26C27C28H28179.4°180.0°
C27C28C29H28180.0°179.8°
C28C27C26H26179.3°180.0°
C27C28C29H29179.9°179.7°
C29C28C27H27179.4°179.9°
O3'C3'C4'H3'120.1°123.7°
O3'C3'C4'O4'146.1°155.2°
O3'C3'C4'C5'96.1°86.3°
O3'C3'C2'H2'28.5°20.4°
O3'C3'C2'H2'A91.5°102.2°
O3'C3'C4'H4'22.6°36.7°
C3'C4'O4'C5'122.3°118.4°
C3'C4'O4'H4'119.1°118.5°
C3'C4'C5'H4'119.3°123.0°
C3'C4'C5'N5'178.8°175.0°
C4'C3'C2'H2'88.8°97.8°
C4'C3'C2'H2'A151.2°139.6°
C4'C3'O3'HO3'66.6°174.1°
C3'C4'C5'H5'61.3°55.0°
C3'C4'C5'H5'A58.8°65.0°
O4'C4'C5'H4'123.5°123.0°
O4'C4'C5'N5'61.5°71.0°
C4'O4'C1'H1'121.3°92.9°
O4'C4'C3'H3'93.9°81.1°
O4'C4'C5'H5'178.5°169.1°
O4'C4'C5'H5'A58.5°49.0°
C4'C5'N5'C4184.7°66.0°
C4'C5'N5'H5'120.0°120.0°
C4'C5'N5'H5'A120.0°120.1°
C5'C4'C3'H3'24.0°37.3°
C4'C5'H5'H5'A119.8°120.1°
C41N5'C17H1766.0°62.4°
N5'C41H41H41A120.0°120.0°
N5'C41H41H41B120.0°120.1°
N5'C41H41AH41B120.0°120.0°
C41N5'C5'H5'35.3°54.0°
C41N5'C5'H5'A155.3°173.9°
C5'N5'C17H1754.2°61.6°
N5'C5'C4'H4'61.9°52.0°
C5'N5'C41H4155.5°178.1°
C5'N5'C41H41A64.5°61.9°
C5'N5'C41H41B175.5°58.1°
N5'C5'H5'H5'A119.8°120.0°
H5C5C6H60.8°0.1°
H1'C1'C2'H2'28.9°1.2°
H1'C1'C2'H2'A91.0°123.8°
H19C19C20H200.3°0.0°
H2'C2'C3'H3'148.5°144.0°
H2'AC2'C3'H3'28.5°21.4°
H20C20C21H210.0°0.0°
H21C21C22H220.1°0.0°
H22C22C23H230.0°0.0°
H25C25C26H260.2°0.1°
H26C26C27H270.7°0.0°
H27C27C28H280.6°0.0°
H28C28C29H290.1°0.1°
H3'C3'O3'HO3'56.5°62.2°
H3'C3'C4'H4'142.7°160.3°
H4'C4'C5'H5'58.0°67.9°
H4'C4'C5'H5'A178.1°172.0°
H41C41H41AH41B120.0°120.0°

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PDB entries from 2024-07-17

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