DU

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OP3	P	sing	1.62Å	17.31Å
OP3	HOP3	sing	0.98Å	0.95Å
P	OP1	doub	1.50Å	1.49Å
P	OP2	sing	1.62Å	1.49Å
P	O5'	sing	1.62Å	1.60Å
OP2	HOP2	sing	0.98Å	0.95Å
O5'	C5'	sing	1.42Å	1.44Å
C5'	C4'	sing	1.52Å	1.51Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5''	sing	1.09Å	1.10Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C3'	sing	1.52Å	1.53Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	C1'	sing	1.43Å	1.43Å
C3'	O3'	sing	1.43Å	1.42Å
C3'	C2'	sing	1.51Å	1.52Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	C1'	sing	1.52Å	1.52Å
C2'	H2'	sing	1.10Å	1.10Å
C2'	H2''	sing	1.09Å	1.10Å
C1'	N1	sing	1.43Å	1.47Å
C1'	H1'	sing	1.10Å	1.10Å
N1	C2	sing	1.41Å	1.38Å
N1	C6	sing	1.39Å	1.37Å
C2	O2	doub	1.23Å	1.22Å
C2	N3	sing	1.40Å	1.38Å
N3	C4	sing	1.39Å	1.38Å
N3	H3	sing	1.02Å	1.00Å
C4	O4	doub	1.23Å	1.23Å
C4	C5	sing	1.48Å	1.43Å
C5	C6	doub	1.34Å	1.33Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	OP3	HOP3	137.6°	118.9°
OP3	P	OP1	137.6°	115.3°
OP3	P	OP2	99.2°	103.3°
OP3	P	O5'	72.1°	103.7°
OP1	P	OP2	119.4°	115.0°
OP1	P	O5'	107.7°	115.0°
OP2	P	O5'	108.8°	102.9°
P	OP2	HOP2	109.5°	118.9°
P	O5'	C5'	120.5°	118.5°
O5'	C5'	C4'	110.6°	108.9°
O5'	C5'	H5'	108.8°	109.0°
O5'	C5'	H5''	109.1°	108.9°
C4'	C5'	H5'	108.9°	110.3°
C4'	C5'	H5''	109.1°	110.3°
C5'	C4'	O4'	110.4°	107.9°
C5'	C4'	C3'	116.7°	112.9°
C5'	C4'	H4'	102.6°	109.5°
H5'	C5'	H5''	110.4°	109.3°
O4'	C4'	C3'	106.0°	106.2°
O4'	C4'	H4'	114.1°	107.9°
C4'	O4'	C1'	110.2°	109.3°
C3'	C4'	H4'	107.3°	112.2°
C4'	C3'	O3'	107.4°	109.9°
C4'	C3'	C2'	103.1°	103.1°
C4'	C3'	H3'	114.9°	113.5°
O4'	C1'	C2'	105.6°	107.4°
O4'	C1'	N1	107.5°	109.3°
O4'	C1'	H1'	115.1°	108.0°
O3'	C3'	C2'	109.9°	109.7°
O3'	C3'	H3'	108.7°	107.4°
C3'	O3'	HO3'	109.5°	107.3°
C2'	C3'	H3'	112.7°	113.2°
C3'	C2'	C1'	102.0°	102.5°
C3'	C2'	H2'	113.6°	109.7°
C3'	C2'	H2''	112.0°	114.1°
C1'	C2'	H2'	113.6°	110.6°
C1'	C2'	H2''	112.1°	111.7°
C2'	C1'	N1	114.6°	112.8°
C2'	C1'	H1'	108.1°	111.5°
H2'	C2'	H2''	103.9°	108.3°
N1	C1'	H1'	106.2°	107.8°
C1'	N1	C2	118.2°	121.3°
C1'	N1	C6	120.8°	118.4°
C2	N1	C6	121.0°	120.3°
N1	C2	O2	122.8°	123.8°
N1	C2	N3	114.8°	115.1°
N1	C6	C5	122.8°	123.9°
N1	C6	H6	118.6°	115.6°
O2	C2	N3	122.4°	121.1°
C2	N3	C4	126.8°	126.8°
C2	N3	H3	116.6°	116.6°
C4	N3	H3	116.6°	116.6°
N3	C4	O4	119.5°	124.5°
N3	C4	C5	114.8°	114.6°
O4	C4	C5	125.7°	120.9°
C4	C5	C6	119.8°	119.3°
C4	C5	H5	120.1°	118.8°
C6	C5	H5	120.1°	121.9°
C5	C6	H6	118.6°	120.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP3	P	OP1	OP2	152.9°	120.1°
OP3	P	OP1	O5'	82.5°	120.6°
OP3	P	OP2	O5'	74.1°	107.7°
OP3	P	OP2	HOP2	2.3°	78.5°
OP3	P	O5'	C5'	54.0°	53.2°
HOP3	OP3	P	OP1	180.0°	48.8°
HOP3	OP3	P	OP2	23.7°	77.5°
HOP3	OP3	P	O5'	83.2°	175.4°
OP1	P	OP2	O5'	124.0°	125.8°
OP1	P	OP2	HOP2	159.6°	48.0°
OP1	P	O5'	C5'	170.6°	179.9°
OP2	P	O5'	C5'	39.9°	54.2°
O5'	P	OP2	HOP2	76.4°	173.8°
P	O5'	C5'	C4'	151.5°	180.0°
P	O5'	C5'	H5'	89.0°	59.6°
P	O5'	C5'	H5''	31.5°	59.6°
O5'	C5'	C4'	H5'	119.5°	119.6°
O5'	C5'	C4'	H5''	120.0°	119.5°
O5'	C5'	H5'	H5''	119.7°	119.0°
O5'	C5'	C4'	O4'	72.8°	62.4°
O5'	C5'	C4'	C3'	48.3°	179.5°
O5'	C5'	C4'	H4'	165.3°	54.7°
C4'	C5'	H5'	H5''	119.7°	121.5°
C5'	C4'	O4'	C3'	127.2°	121.4°
C5'	C4'	O4'	H4'	114.9°	118.2°
C5'	C4'	C3'	H4'	114.4°	124.3°
C5'	C4'	O4'	C1'	124.5°	108.6°
C5'	C4'	C3'	O3'	144.5°	154.2°
C5'	C4'	C3'	C2'	99.5°	88.8°
C5'	C4'	C3'	H3'	23.5°	34.0°
H5'	C5'	C4'	O4'	46.8°	57.1°
H5'	C5'	C4'	C3'	167.8°	60.0°
H5'	C5'	C4'	H4'	75.2°	174.3°
H5''	C5'	C4'	O4'	167.3°	178.1°
H5''	C5'	C4'	C3'	71.7°	61.0°
H5''	C5'	C4'	H4'	45.3°	64.8°
O4'	C4'	C3'	H4'	122.2°	117.6°
O4'	C4'	C3'	O3'	92.1°	87.7°
O4'	C4'	C3'	C2'	23.9°	29.2°
O4'	C4'	C3'	H3'	146.8°	152.1°
C4'	O4'	C1'	C2'	19.8°	9.0°
C4'	O4'	C1'	N1	142.6°	131.7°
C4'	O4'	C1'	H1'	99.3°	111.3°
C3'	C4'	O4'	C1'	2.7°	12.7°
C4'	C3'	O3'	C2'	111.4°	112.7°
C4'	C3'	O3'	H3'	124.9°	123.9°
C4'	C3'	C2'	H3'	124.5°	123.0°
C4'	C3'	O3'	HO3'	128.8°	128.0°
C4'	C3'	C2'	C1'	34.7°	33.4°
C4'	C3'	C2'	H2'	157.3°	84.1°
C4'	C3'	C2'	H2''	85.3°	154.3°
H4'	C4'	O4'	C1'	120.5°	133.2°
H4'	C4'	C3'	O3'	30.1°	29.9°
H4'	C4'	C3'	C2'	146.1°	146.9°
H4'	C4'	C3'	H3'	91.0°	90.3°
O4'	C1'	C2'	C3'	34.0°	26.9°
O4'	C1'	C2'	N1	118.1°	120.5°
O4'	C1'	C2'	H1'	123.7°	118.1°
O4'	C1'	C2'	H2'	156.7°	90.0°
O4'	C1'	C2'	H2''	86.0°	149.4°
O4'	C1'	N1	H1'	123.7°	117.1°
O4'	C1'	N1	C2	118.4°	147.1°
O4'	C1'	N1	C6	61.1°	32.9°
O3'	C3'	C2'	H3'	121.4°	119.9°
O3'	C3'	C2'	C1'	79.5°	83.6°
O3'	C3'	C2'	H2'	43.1°	158.9°
O3'	C3'	C2'	H2''	160.5°	37.2°
C2'	C3'	O3'	HO3'	119.8°	119.3°
C3'	C2'	C1'	H2'	122.7°	116.9°
C3'	C2'	C1'	H2''	120.0°	122.5°
C3'	C2'	H2'	H2''	122.0°	125.1°
C3'	C2'	C1'	N1	152.1°	147.4°
C3'	C2'	C1'	H1'	89.7°	91.2°
H3'	C3'	O3'	HO3'	3.9°	4.1°
H3'	C3'	C2'	C1'	159.1°	156.4°
H3'	C3'	C2'	H2'	78.2°	38.9°
H3'	C3'	C2'	H2''	39.1°	82.7°
C1'	C2'	H2'	H2''	122.0°	122.7°
C2'	C1'	N1	H1'	119.2°	123.5°
C2'	C1'	N1	C2	124.5°	93.5°
C2'	C1'	N1	C6	56.0°	86.5°
H2'	C2'	C1'	N1	85.2°	30.6°
H2'	C2'	C1'	H1'	33.0°	151.9°
H2''	C2'	C1'	N1	32.2°	90.1°
H2''	C2'	C1'	H1'	150.4°	31.3°
C1'	N1	C2	C6	179.5°	180.0°
C1'	N1	C2	O2	1.0°	0.0°
C1'	N1	C2	N3	179.2°	180.0°
C1'	N1	C6	C5	179.3°	180.0°
C1'	N1	C6	H6	0.6°	0.0°
H1'	C1'	N1	C2	5.2°	30.0°
H1'	C1'	N1	C6	175.2°	150.0°
N1	C2	O2	N3	179.8°	180.0°
N1	C2	N3	C4	0.5°	0.0°
N1	C2	N3	H3	179.5°	180.0°
C2	N1	C6	C5	0.2°	0.0°
C2	N1	C6	H6	179.8°	180.0°
C6	N1	C2	O2	179.5°	180.0°
C6	N1	C2	N3	0.4°	0.0°
N1	C6	C5	C4	0.1°	0.0°
N1	C6	C5	H6	180.0°	180.0°
N1	C6	C5	H5	179.9°	180.0°
O2	C2	N3	C4	179.3°	180.0°
O2	C2	N3	H3	0.7°	0.0°
C2	N3	C4	H3	180.0°	180.0°
C2	N3	C4	O4	178.5°	179.9°
C2	N3	C4	C5	0.4°	0.0°
N3	C4	O4	C5	178.8°	180.0°
N3	C4	C5	C6	0.2°	0.0°
N3	C4	C5	H5	179.8°	180.0°
H3	N3	C4	O4	1.5°	0.0°
H3	N3	C4	C5	179.6°	180.0°
O4	C4	C5	C6	178.7°	180.0°
O4	C4	C5	H5	1.4°	0.0°
C4	C5	C6	H5	180.0°	180.0°
C4	C5	C6	H6	179.9°	180.0°
H5	C5	C6	H6	0.1°	0.0°

Definition date:	2001-06-01
Last modified:	2011-06-04
Release status:	REL
Processing site:	PDBJ