DTP
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
PG | O1G | doub | 1.48Å | 1.48Å | |
PG | O2G | sing | 1.61Å | 1.39Å | |
PG | O3G | sing | 1.61Å | 1.55Å | |
PG | O3B | sing | 1.61Å | 1.70Å | |
O2G | HOG2 | sing | 0.97Å | 0.95Å | |
O3G | HOG3 | sing | 0.97Å | 0.95Å | |
PB | O1B | doub | 1.48Å | 1.51Å | |
PB | O2B | sing | 1.61Å | 1.41Å | |
PB | O3B | sing | 1.61Å | 1.63Å | |
PB | O3A | sing | 1.61Å | 1.62Å | |
O2B | HOB2 | sing | 0.97Å | 0.95Å | |
PA | O1A | doub | 1.48Å | 1.47Å | |
PA | O2A | sing | 1.61Å | 1.44Å | |
PA | O3A | sing | 1.61Å | 1.62Å | |
PA | O5' | sing | 1.61Å | 1.49Å | |
O2A | HOA2 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.46Å | |
C5' | C4' | sing | 1.53Å | 1.55Å | |
C5' | H5'1 | sing | 1.09Å | 1.12Å | |
C5' | H5'2 | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.45Å | 1.44Å | |
C4' | C3' | sing | 1.55Å | 1.52Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.41Å | |
C3' | O3' | sing | 1.43Å | 1.41Å | |
C3' | C2' | sing | 1.55Å | 1.52Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | C1' | sing | 1.54Å | 1.51Å | |
C2' | H2'1 | sing | 1.09Å | 1.11Å | |
C2' | H2'2 | sing | 1.09Å | 1.11Å | |
C1' | N9 | sing | 1.46Å | 1.46Å | |
C1' | H1' | sing | 1.09Å | 1.11Å | |
N9 | C8 | sing | 1.36Å | 1.35Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.37Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.10Å | |
N7 | C5 | sing | 1.35Å | 1.37Å | Aromatic |
C5 | C6 | sing | 1.40Å | 1.42Å | Aromatic |
C5 | C4 | doub | 1.40Å | 1.36Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.32Å | |
C6 | N1 | doub | 1.33Å | 1.35Å | Aromatic |
N6 | HN61 | sing | 0.97Å | 1.02Å | |
N6 | HN62 | sing | 0.97Å | 1.02Å | |
N1 | C2 | sing | 1.32Å | 1.34Å | Aromatic |
C2 | N3 | doub | 1.32Å | 1.34Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.10Å | |
N3 | C4 | sing | 1.33Å | 1.34Å | Aromatic |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O1G | PG | O2G | 105.2° | 109.5° |
O1G | PG | O3G | 112.8° | 109.5° |
O1G | PG | O3B | 114.7° | 109.5° |
O2G | PG | O3G | 112.0° | 109.4° |
O2G | PG | O3B | 102.7° | 109.5° |
PG | O2G | HOG2 | 105.2° | 106.8° |
O3G | PG | O3B | 109.1° | 109.5° |
PG | O3G | HOG3 | 112.7° | 106.9° |
PG | O3B | PB | 136.1° | 106.8° |
O1B | PB | O2B | 119.4° | 109.5° |
O1B | PB | O3B | 112.0° | 109.4° |
O1B | PB | O3A | 104.9° | 109.4° |
O2B | PB | O3B | 107.2° | 109.5° |
O2B | PB | O3A | 108.4° | 109.5° |
PB | O2B | HOB2 | 119.5° | 106.8° |
O3B | PB | O3A | 103.7° | 109.5° |
PB | O3A | PA | 127.4° | 106.8° |
O1A | PA | O2A | 115.7° | 109.5° |
O1A | PA | O3A | 100.5° | 109.5° |
O1A | PA | O5' | 109.4° | 109.5° |
O2A | PA | O3A | 118.1° | 109.4° |
O2A | PA | O5' | 107.8° | 109.4° |
PA | O2A | HOA2 | 115.7° | 106.8° |
O3A | PA | O5' | 104.5° | 109.5° |
PA | O5' | C5' | 120.7° | 106.9° |
O5' | C5' | C4' | 117.8° | 109.5° |
O5' | C5' | H5'1 | 109.2° | 109.6° |
O5' | C5' | H5'2 | 109.2° | 109.4° |
C4' | C5' | H5'1 | 109.3° | 109.4° |
C4' | C5' | H5'2 | 109.3° | 109.4° |
C5' | C4' | O4' | 112.4° | 110.8° |
C5' | C4' | C3' | 116.3° | 110.6° |
C5' | C4' | H4' | 101.3° | 110.5° |
H5'1 | C5' | H5'2 | 100.9° | 109.4° |
O4' | C4' | C3' | 105.9° | 103.6° |
O4' | C4' | H4' | 112.6° | 110.6° |
C4' | O4' | C1' | 112.0° | 106.8° |
C3' | C4' | H4' | 108.5° | 110.6° |
C4' | C3' | O3' | 110.3° | 110.9° |
C4' | C3' | C2' | 105.8° | 102.1° |
C4' | C3' | H3' | 112.4° | 110.9° |
O4' | C1' | C2' | 108.1° | 107.4° |
O4' | C1' | N9 | 106.9° | 109.9° |
O4' | C1' | H1' | 113.6° | 109.9° |
O3' | C3' | C2' | 112.5° | 110.9° |
O3' | C3' | H3' | 105.7° | 110.8° |
C3' | O3' | HO3' | 110.3° | 106.8° |
C2' | C3' | H3' | 110.2° | 110.9° |
C3' | C2' | C1' | 105.5° | 104.2° |
C3' | C2' | H2'1 | 113.7° | 110.5° |
C3' | C2' | H2'2 | 113.7° | 110.5° |
C1' | C2' | H2'1 | 113.7° | 110.5° |
C1' | C2' | H2'2 | 113.7° | 110.5° |
C2' | C1' | N9 | 113.7° | 109.8° |
C2' | C1' | H1' | 106.8° | 109.9° |
H2'1 | C2' | H2'2 | 96.8° | 110.5° |
N9 | C1' | H1' | 108.0° | 109.9° |
C1' | N9 | C8 | 137.2° | 126.3° |
C1' | N9 | C4 | 117.3° | 126.3° |
C8 | N9 | C4 | 105.4° | 107.4° |
N9 | C8 | N7 | 113.9° | 109.9° |
N9 | C8 | H8 | 124.5° | 125.0° |
N9 | C4 | C5 | 105.9° | 106.0° |
N9 | C4 | N3 | 127.4° | 135.0° |
N7 | C8 | H8 | 121.6° | 125.1° |
C8 | N7 | C5 | 104.0° | 109.5° |
N7 | C5 | C6 | 132.4° | 134.7° |
N7 | C5 | C4 | 110.7° | 107.1° |
C6 | C5 | C4 | 116.9° | 118.2° |
C5 | C6 | N6 | 123.9° | 120.8° |
C5 | C6 | N1 | 117.8° | 118.5° |
C5 | C4 | N3 | 126.7° | 119.0° |
N6 | C6 | N1 | 118.3° | 120.8° |
C6 | N6 | HN61 | 123.9° | 120.0° |
C6 | N6 | HN62 | 107.1° | 120.1° |
C6 | N1 | C2 | 118.5° | 121.2° |
HN61 | N6 | HN62 | 107.1° | 119.9° |
N1 | C2 | N3 | 128.5° | 122.4° |
N1 | C2 | H2 | 115.8° | 118.8° |
N3 | C2 | H2 | 115.7° | 118.8° |
C2 | N3 | C4 | 111.5° | 120.7° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O1G | PG | O2G | O3G | 122.8° | 120.0° |
O1G | PG | O2G | O3B | 120.3° | 120.0° |
O1G | PG | O3G | O3B | 128.6° | 120.0° |
O1G | PG | O2G | HOG2 | 180.0° | 60.0° |
O1G | PG | O3G | HOG3 | 180.0° | 180.0° |
O1G | PG | O3B | PB | 7.9° | 60.0° |
O2G | PG | O3G | O3B | 113.0° | 120.0° |
O2G | PG | O3G | HOG3 | 61.6° | 60.0° |
O2G | PG | O3B | PB | 121.4° | 180.0° |
O3G | PG | O2G | HOG2 | 57.2° | 60.1° |
O3G | PG | O3B | PB | 119.7° | 60.0° |
O3B | PG | O2G | HOG2 | 59.7° | 180.0° |
O3B | PG | O3G | HOG3 | 51.4° | 60.0° |
PG | O3B | PB | O1B | 6.9° | 60.1° |
PG | O3B | PB | O2B | 125.9° | 60.0° |
PG | O3B | PB | O3A | 119.6° | 180.0° |
O1B | PB | O2B | O3B | 128.7° | 120.0° |
O1B | PB | O2B | O3A | 119.9° | 120.0° |
O1B | PB | O3B | O3A | 112.7° | 119.9° |
O1B | PB | O2B | HOB2 | 180.0° | 179.9° |
O1B | PB | O3A | PA | 5.9° | 60.1° |
O2B | PB | O3B | O3A | 114.5° | 120.0° |
O2B | PB | O3A | PA | 134.5° | 59.9° |
O3B | PB | O2B | HOB2 | 51.3° | 59.9° |
O3B | PB | O3A | PA | 111.9° | 180.0° |
O3A | PB | O2B | HOB2 | 60.1° | 60.1° |
PB | O3A | PA | O1A | 65.7° | 59.9° |
PB | O3A | PA | O2A | 61.1° | 60.1° |
PB | O3A | PA | O5' | 179.2° | 180.0° |
O1A | PA | O2A | O3A | 119.1° | 120.0° |
O1A | PA | O2A | O5' | 122.9° | 120.0° |
O1A | PA | O3A | O5' | 113.4° | 120.1° |
O1A | PA | O2A | HOA2 | 179.9° | 179.9° |
O1A | PA | O5' | C5' | 175.1° | 60.0° |
O2A | PA | O3A | O5' | 119.8° | 119.9° |
O2A | PA | O5' | C5' | 48.5° | 60.0° |
O3A | PA | O2A | HOA2 | 60.8° | 60.0° |
O3A | PA | O5' | C5' | 78.0° | 179.9° |
O5' | PA | O2A | HOA2 | 57.2° | 60.0° |
PA | O5' | C5' | C4' | 156.1° | 179.9° |
PA | O5' | C5' | H5'1 | 30.8° | 60.0° |
PA | O5' | C5' | H5'2 | 78.6° | 60.0° |
O5' | C5' | C4' | H5'1 | 125.3° | 120.1° |
O5' | C5' | C4' | H5'2 | 125.3° | 120.0° |
O5' | C5' | H5'1 | H5'2 | 114.9° | 120.0° |
O5' | C5' | C4' | O4' | 72.3° | 65.7° |
O5' | C5' | C4' | C3' | 49.9° | 180.0° |
O5' | C5' | C4' | H4' | 167.2° | 57.2° |
C4' | C5' | H5'1 | H5'2 | 115.0° | 119.9° |
C5' | C4' | O4' | C3' | 127.9° | 118.7° |
C5' | C4' | O4' | H4' | 113.7° | 122.8° |
C5' | C4' | C3' | H4' | 113.3° | 122.8° |
C5' | C4' | O4' | C1' | 114.0° | 158.6° |
C5' | C4' | C3' | O3' | 129.4° | 86.1° |
C5' | C4' | C3' | C2' | 108.6° | 155.7° |
C5' | C4' | C3' | H3' | 11.7° | 37.5° |
H5'1 | C5' | C4' | O4' | 162.4° | 174.2° |
H5'1 | C5' | C4' | C3' | 75.4° | 59.9° |
H5'1 | C5' | C4' | H4' | 42.0° | 63.0° |
H5'2 | C5' | C4' | O4' | 52.9° | 54.3° |
H5'2 | C5' | C4' | C3' | 175.2° | 60.0° |
H5'2 | C5' | C4' | H4' | 67.5° | 177.1° |
O4' | C4' | C3' | H4' | 121.1° | 118.5° |
O4' | C4' | C3' | O3' | 105.0° | 155.2° |
O4' | C4' | C3' | C2' | 17.0° | 37.0° |
O4' | C4' | C3' | H3' | 137.3° | 81.2° |
C4' | O4' | C1' | C2' | 4.9° | 26.4° |
C4' | O4' | C1' | N9 | 117.8° | 145.8° |
C4' | O4' | C1' | H1' | 123.3° | 93.2° |
C3' | C4' | O4' | C1' | 13.9° | 39.9° |
C4' | C3' | O3' | C2' | 117.9° | 112.7° |
C4' | C3' | O3' | H3' | 121.8° | 123.7° |
C4' | C3' | C2' | H3' | 121.8° | 118.2° |
C4' | C3' | O3' | HO3' | 180.0° | 174.2° |
C4' | C3' | C2' | C1' | 14.1° | 20.9° |
C4' | C3' | C2' | H2'1 | 111.2° | 97.8° |
C4' | C3' | C2' | H2'2 | 139.3° | 139.6° |
H4' | C4' | O4' | C1' | 132.3° | 78.6° |
H4' | C4' | C3' | O3' | 16.1° | 36.7° |
H4' | C4' | C3' | C2' | 138.1° | 81.5° |
H4' | C4' | C3' | H3' | 101.6° | 160.3° |
O4' | C1' | C2' | C3' | 6.1° | 2.0° |
O4' | C1' | C2' | N9 | 118.5° | 119.5° |
O4' | C1' | C2' | H1' | 122.6° | 119.5° |
O4' | C1' | C2' | H2'1 | 119.2° | 120.7° |
O4' | C1' | C2' | H2'2 | 131.4° | 116.7° |
O4' | C1' | N9 | H1' | 122.6° | 121.0° |
O4' | C1' | N9 | C8 | 76.6° | 28.2° |
O4' | C1' | N9 | C4 | 104.9° | 151.7° |
O3' | C3' | C2' | H3' | 117.7° | 123.6° |
O3' | C3' | C2' | C1' | 106.5° | 139.1° |
O3' | C3' | C2' | H2'1 | 128.3° | 20.4° |
O3' | C3' | C2' | H2'2 | 18.8° | 102.2° |
C2' | C3' | O3' | HO3' | 62.1° | 61.5° |
C3' | C2' | C1' | H2'1 | 125.2° | 118.7° |
C3' | C2' | C1' | H2'2 | 125.3° | 118.7° |
C3' | C2' | H2'1 | H2'2 | 119.7° | 122.6° |
C3' | C2' | C1' | N9 | 124.5° | 121.4° |
C3' | C2' | C1' | H1' | 116.5° | 117.5° |
H3' | C3' | O3' | HO3' | 58.2° | 62.2° |
H3' | C3' | C2' | C1' | 135.8° | 97.3° |
H3' | C3' | C2' | H2'1 | 10.6° | 144.0° |
H3' | C3' | C2' | H2'2 | 98.9° | 21.4° |
C1' | C2' | H2'1 | H2'2 | 119.6° | 122.6° |
C2' | C1' | N9 | H1' | 118.3° | 121.0° |
C2' | C1' | N9 | C8 | 42.6° | 89.8° |
C2' | C1' | N9 | C4 | 136.0° | 90.3° |
H2'1 | C2' | C1' | N9 | 0.7° | 119.9° |
H2'1 | C2' | C1' | H1' | 118.3° | 1.1° |
H2'2 | C2' | C1' | N9 | 110.2° | 2.7° |
H2'2 | C2' | C1' | H1' | 8.8° | 123.7° |
C1' | N9 | C8 | C4 | 178.7° | 179.9° |
C1' | N9 | C8 | N7 | 179.4° | 179.9° |
C1' | N9 | C8 | H8 | 0.6° | 0.1° |
C1' | N9 | C4 | C5 | 179.9° | 179.8° |
C1' | N9 | C4 | N3 | 1.6° | 0.0° |
H1' | C1' | N9 | C8 | 160.9° | 149.2° |
H1' | C1' | N9 | C4 | 17.7° | 30.7° |
N9 | C8 | N7 | H8 | 179.9° | 180.0° |
N9 | C8 | N7 | C5 | 0.1° | 0.2° |
C8 | N9 | C4 | C5 | 1.1° | 0.3° |
C8 | N9 | C4 | N3 | 179.5° | 179.9° |
C4 | N9 | C8 | N7 | 0.8° | 0.1° |
C4 | N9 | C8 | H8 | 179.3° | 180.0° |
N9 | C4 | C5 | N7 | 1.2° | 0.4° |
N9 | C4 | C5 | C6 | 179.7° | 179.7° |
N9 | C4 | C5 | N3 | 178.3° | 179.9° |
N9 | C4 | N3 | C2 | 179.4° | 180.0° |
C8 | N7 | C5 | C6 | 179.6° | 179.5° |
C8 | N7 | C5 | C4 | 0.7° | 0.4° |
H8 | C8 | N7 | C5 | 180.0° | 179.8° |
N7 | C5 | C6 | C4 | 178.9° | 179.0° |
N7 | C5 | C6 | N6 | 0.6° | 0.7° |
N7 | C5 | C6 | N1 | 179.5° | 179.6° |
N7 | C5 | C4 | N3 | 179.5° | 179.7° |
C5 | C6 | N6 | N1 | 179.8° | 179.7° |
C5 | C6 | N6 | HN61 | 180.0° | 179.7° |
C5 | C6 | N6 | HN62 | 54.7° | 0.5° |
C5 | C6 | N1 | C2 | 0.2° | 0.3° |
C6 | C5 | C4 | N3 | 1.4° | 0.5° |
C4 | C5 | C6 | N6 | 179.5° | 179.7° |
C4 | C5 | C6 | N1 | 0.7° | 0.5° |
C5 | C4 | N3 | C2 | 1.4° | 0.2° |
C6 | N6 | HN61 | HN62 | 125.3° | 179.8° |
N6 | C6 | N1 | C2 | 180.0° | 180.0° |
N1 | C6 | N6 | HN61 | 0.1° | 0.0° |
N1 | C6 | N6 | HN62 | 125.4° | 179.8° |
C6 | N1 | C2 | N3 | 0.3° | 0.0° |
C6 | N1 | C2 | H2 | 179.7° | 180.0° |
N1 | C2 | N3 | H2 | 180.0° | 180.0° |
N1 | C2 | N3 | C4 | 0.8° | 0.1° |
H2 | C2 | N3 | C4 | 179.2° | 179.9° |