Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

DSV

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2C1doub1.38Å1.41ÅAromatic
C1C6sing1.39Å1.42ÅAromatic
C1S21sing1.76Å1.77Å
C3C2sing1.40Å1.41ÅAromatic
C2H2sing1.08Å1.08Å
S10C3sing1.76Å1.77ÅAromatic
C4C3doub1.39Å1.40ÅAromatic
C12C4sing1.47Å1.49ÅAromatic
C4C5sing1.41Å1.41ÅAromatic
H5C5sing1.08Å1.08Å
C5C6doub1.37Å1.42ÅAromatic
C6H6sing1.08Å1.08Å
C11S10sing1.76Å1.77ÅAromatic
CY1C11doub1.40Å1.41ÅAromatic
C11C12sing1.39Å1.40ÅAromatic
CY2C12doub1.41Å1.41ÅAromatic
CZ1CY1sing1.38Å1.42ÅAromatic
HY1CY1sing1.08Å1.08Å
HZ1CZ1sing1.08Å1.08Å
CZ1CZ2doub1.39Å1.42ÅAromatic
HZ2CZ2sing1.08Å1.08Å
CZ2CY2sing1.37Å1.42ÅAromatic
CY2HY2sing1.08Å1.08Å
N24S21sing1.66Å1.74Å
O22S21doub1.42Å1.43Å
S21O23doub1.42Å1.43Å
HN24N24sing0.97Å1.00Å
N24C10sing1.46Å1.46Å
C37C10sing1.51Å1.54Å
C10CBCsing1.53Å1.54Å
C10H10sing1.09Å1.10Å
CC2CBCsing1.53Å1.54Å
CBCHBCsing1.09Å1.10Å
CBCCC1sing1.53Å1.53Å
HC1CC1sing1.09Å1.10Å
CC1HC1Asing1.09Å1.10Å
CC1HC1Bsing1.09Å1.10Å
HC2CC2sing1.09Å1.10Å
HC2BCC2sing1.09Å1.10Å
HC2ACC2sing1.09Å1.10Å
O39C37doub1.21Å1.19Å
O40C37sing1.34Å1.35Å
O40HO40sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C6120.1°120.1°
C2C1S21119.9°120.0°
C1C2C3118.3°120.5°
C1C2H2120.9°119.8°
C6C1S21120.0°119.9°
C1C6C5120.0°120.2°
C1C6H6120.0°119.9°
C1S21N24107.0°107.2°
C1S21O22109.7°106.4°
C1S21O23109.2°106.4°
C3C2H2120.8°119.8°
C2C3S10126.4°129.7°
C2C3C4121.8°119.7°
S10C3C4111.8°110.7°
C3S10C1191.7°93.0°
C3C4C12112.2°112.8°
C3C4C5119.7°119.2°
C12C4C5128.1°128.0°
C4C12C11112.3°112.8°
C4C12CY2128.1°128.0°
C4C5H5120.3°119.8°
C4C5C6119.5°120.4°
H5C5C6120.3°119.8°
C5C6H6120.0°119.8°
S10C11CY1126.3°129.6°
S10C11C12111.8°110.7°
CY1C11C12121.9°119.7°
C11CY1CZ1118.7°120.4°
C11CY1HY1120.7°119.8°
C11C12CY2119.6°119.2°
C12CY2CZ2119.3°120.3°
C12CY2HY2120.4°119.8°
CZ1CY1HY1120.7°119.8°
CY1CZ1HZ1120.4°119.9°
CY1CZ1CZ2119.3°120.1°
HZ1CZ1CZ2120.3°119.9°
CZ1CZ2HZ2119.8°119.9°
CZ1CZ2CY2120.3°120.2°
HZ2CZ2CY2119.9°119.9°
CZ2CY2HY2120.3°119.8°
N24S21O22104.9°106.4°
N24S21O23105.4°106.4°
S21N24HN24106.5°120.0°
S21N24C10118.8°120.0°
O22S21O23119.8°123.2°
HN24N24C10106.5°120.0°
N24C10C37110.3°109.5°
N24C10CBC110.8°109.5°
N24C10H10108.6°109.4°
C37C10CBC111.2°109.5°
C37C10H10108.2°109.5°
C10C37O39124.2°120.0°
C10C37O40111.8°120.0°
CBCC10H10107.6°109.5°
C10CBCCC2111.5°109.5°
C10CBCHBC106.0°109.4°
C10CBCCC1112.6°109.5°
CC2CBCHBC109.1°109.5°
CC2CBCCC1109.7°109.5°
CBCCC2HC2109.5°109.5°
CBCCC2HC2B109.5°109.5°
CBCCC2HC2A109.4°109.5°
HBCCBCCC1107.8°109.5°
CBCCC1HC1109.5°109.5°
CBCCC1HC1A109.5°109.5°
CBCCC1HC1B109.5°109.4°
HC1CC1HC1A109.4°109.5°
HC1CC1HC1B109.4°109.4°
HC1ACC1HC1B109.5°109.5°
HC2CC2HC2B109.4°109.4°
HC2CC2HC2A109.5°109.4°
HC2BCC2HC2A109.5°109.5°
O39C37O40124.0°120.0°
C37O40HO40109.5°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C6S21179.7°179.8°
C1C2C3H2180.0°180.0°
C1C2C3S10178.3°180.0°
C1C2C3C41.6°0.0°
C2C1C6C59.4°0.1°
C2C1C6H6170.6°179.7°
C2C1S21N24126.1°89.7°
C2C1S21O2212.8°23.8°
C2C1S21O23120.3°156.7°
C6C1C2C35.3°0.0°
C6C1C2H2174.7°180.0°
C1C6C5C46.5°0.1°
C1C6C5H5173.5°180.0°
C1C6C5H6180.0°179.6°
C6C1S21N2453.6°90.0°
C6C1S21O22166.8°156.4°
C6C1S21O2360.0°23.5°
S21C1C2C3174.3°179.7°
S21C1C2H25.7°0.3°
S21C1C6C5170.3°179.7°
S21C1C6H69.7°0.1°
C1S21N24O22116.5°113.6°
C1S21N24O23116.1°113.5°
C1S21O22O23127.4°123.0°
C1S21N24HN2495.1°115.0°
C1S21N24C10144.9°65.0°
C2C3S10C4180.0°180.0°
C2C3C4C12175.4°180.0°
C2C3C4C54.5°0.1°
C2C3S10C11176.6°180.0°
H2C2C3S101.7°0.0°
H2C2C3C4178.4°180.0°
S10C3C4C124.7°0.0°
S10C3C4C5175.4°179.9°
C3S10C11CY1178.7°180.0°
C3S10C11C121.2°0.0°
C3C4C12C5179.9°179.9°
C3C4C5H5179.6°180.0°
C3C4C5C60.4°0.1°
C4C3S10C113.4°0.0°
C3C4C12C113.8°0.0°
C3C4C12CY2176.1°180.0°
C12C4C5H50.5°0.1°
C12C4C5C6179.4°180.0°
C4C12C11S101.2°0.0°
C4C12C11CY1178.9°180.0°
C4C12C11CY2179.9°180.0°
C4C12CY2CZ2176.0°180.0°
C4C12CY2HY24.0°0.1°
C4C5H5C6180.0°179.9°
C4C5C6H6173.5°179.7°
C5C4C12C11176.3°180.0°
C5C4C12CY23.8°0.1°
H5C5C6H66.5°0.4°
S10C11CY1C12179.9°179.9°
S10C11C12CY2178.7°180.0°
S10C11CY1CZ1179.8°180.0°
S10C11CY1HY10.2°0.1°
CY1C11C12CY21.2°0.1°
C11CY1CZ1HY1180.0°180.0°
C11CY1CZ1HZ1173.9°179.9°
C11CY1CZ1CZ26.1°0.0°
C12C11CY1CZ10.1°0.0°
C12C11CY1HY1179.9°180.0°
C11C12CY2CZ23.9°0.1°
C11C12CY2HY2176.1°180.0°
C12CY2CZ2CZ110.2°0.1°
C12CY2CZ2HZ2169.8°180.0°
C12CY2CZ2HY2180.0°179.9°
CY1CZ1HZ1CZ2180.0°179.9°
CY1CZ1CZ2HZ2168.7°179.9°
CY1CZ1CZ2CY211.3°0.1°
HY1CY1CZ1HZ16.1°0.0°
HY1CY1CZ1CZ2173.9°180.0°
HZ1CZ1CZ2HZ211.3°0.0°
HZ1CZ1CZ2CY2168.7°179.9°
CZ1CZ2HZ2CY2180.0°179.9°
CZ1CZ2CY2HY2169.8°180.0°
HZ2CZ2CY2HY210.1°0.1°
N24S21O22O23117.9°122.9°
S21N24HN24C10127.7°180.0°
S21N24C10C37163.5°95.0°
S21N24C10CBC73.0°145.0°
S21N24C10H1045.0°25.0°
O22S21N24HN2421.4°131.5°
O22S21N24C1098.6°48.6°
O23S21N24HN24148.7°1.4°
O23S21N24C1028.7°178.5°
HN24N24C10C3776.6°85.0°
HN24N24C10CBC47.0°35.0°
HN24N24C10H10165.0°155.0°
N24C10C37CBC123.4°120.0°
N24C10C37H10118.7°120.0°
N24C10CBCH10118.6°120.0°
N24C10CBCCC266.9°60.0°
N24C10CBCHBC51.7°60.1°
N24C10CBCCC1169.3°180.0°
N24C10C37O39131.1°0.0°
N24C10C37O4049.0°180.0°
C37C10CBCH10118.3°120.0°
C37C10CBCCC256.2°180.0°
C37C10CBCHBC174.7°60.0°
C37C10CBCCC167.6°60.0°
C10C37O39O40179.9°180.0°
C10C37O40HO40179.9°180.0°
C10CBCCC2HBC116.6°120.0°
C10CBCCC2CC1125.4°120.0°
C10CBCHBCCC1120.8°120.0°
C10CBCCC1HC1110.7°60.0°
C10CBCCC1HC1A9.3°60.0°
C10CBCCC1HC1B129.3°180.0°
C10CBCCC2HC240.1°60.0°
C10CBCCC2HC2B160.1°60.0°
C10CBCCC2HC2A79.9°180.0°
CBCC10C37O397.7°120.0°
CBCC10C37O40172.4°60.0°
H10C10CBCCC2174.5°60.0°
H10C10CBCHBC67.0°180.0°
H10C10CBCCC150.7°60.0°
H10C10C37O39110.3°119.9°
H10C10C37O4069.6°60.0°
CC2CBCHBCCC1119.1°120.0°
CC2CBCCC1HC114.1°180.0°
CC2CBCCC1HC1A134.0°60.0°
CC2CBCCC1HC1B105.9°60.0°
CBCCC2HC2HC2B120.0°120.0°
CBCCC2HC2HC2A120.0°120.0°
CBCCC2HC2BHC2A120.0°120.0°
HBCCBCCC1HC1132.7°59.9°
HBCCBCCC1HC1A107.3°179.9°
HBCCBCCC1HC1B12.8°60.0°
HBCCBCCC2HC2156.7°60.0°
HBCCBCCC2HC2B83.3°180.0°
HBCCBCCC2HC2A36.7°60.0°
CBCCC1HC1HC1A120.0°120.0°
CBCCC1HC1HC1B120.0°120.0°
CBCCC1HC1AHC1B120.0°120.0°
CC1CBCCC2HC285.4°180.0°
CC1CBCCC2HC2B34.6°60.0°
CC1CBCCC2HC2A154.6°60.0°
HC1CC1HC1AHC1B119.9°120.0°
HC2CC2HC2BHC2A120.0°120.0°
O39C37O40HO400.0°0.1°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon