DRZ
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | OP1 | doub | 1.50Å | 1.49Å | |
P | OP2 | sing | 1.62Å | 1.48Å | |
P | OP3 | sing | 1.62Å | 51.72Å | |
P | O5' | sing | 1.62Å | 1.60Å | |
OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
OP3 | HOP3 | sing | 0.98Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.42Å | |
C5' | C4' | sing | 1.53Å | 1.54Å | |
C5' | H5' | sing | 1.09Å | 1.12Å | |
C5' | H5'' | sing | 1.10Å | 1.11Å | |
C4' | O4' | sing | 1.43Å | 1.40Å | |
C4' | C3' | sing | 1.54Å | 1.54Å | |
C4' | H4' | sing | 1.10Å | 1.11Å | |
O4' | H4'O | sing | 0.97Å | 0.95Å | |
C3' | C2' | sing | 1.53Å | 1.55Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | H3' | sing | 1.10Å | 1.11Å | |
C2' | C1' | sing | 1.51Å | 1.52Å | |
C2' | H2' | sing | 1.10Å | 1.12Å | |
C2' | H2'' | sing | 1.10Å | 1.11Å | |
C1' | O1 | doub | 1.23Å | 1.21Å | |
C1' | H1' | sing | 1.10Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP1 | P | OP2 | 119.5° | 115.3° |
OP1 | P | OP3 | 104.4° | 115.0° |
OP1 | P | O5' | 107.2° | 115.1° |
OP2 | P | OP3 | 69.5° | 103.3° |
OP2 | P | O5' | 110.1° | 103.8° |
P | OP2 | HOP2 | 119.5° | 118.8° |
OP3 | P | O5' | 49.7° | 102.7° |
P | OP3 | HOP3 | 104.4° | 118.9° |
P | O5' | C5' | 121.7° | 118.2° |
O5' | C5' | C4' | 110.5° | 109.6° |
O5' | C5' | H5' | 111.8° | 107.2° |
O5' | C5' | H5'' | 111.8° | 107.5° |
C4' | C5' | H5' | 111.8° | 111.6° |
C4' | C5' | H5'' | 111.8° | 112.0° |
C5' | C4' | O4' | 107.0° | 108.4° |
C5' | C4' | C3' | 107.0° | 114.4° |
C5' | C4' | H4' | 123.0° | 109.7° |
H5' | C5' | H5'' | 98.6° | 108.8° |
O4' | C4' | C3' | 128.6° | 108.5° |
O4' | C4' | H4' | 96.3° | 105.6° |
C4' | O4' | H4'O | 107.0° | 106.2° |
C3' | C4' | H4' | 96.3° | 109.8° |
C4' | C3' | C2' | 108.1° | 112.2° |
C4' | C3' | O3' | 111.7° | 110.0° |
C4' | C3' | H3' | 108.8° | 109.3° |
C2' | C3' | O3' | 109.0° | 107.9° |
C2' | C3' | H3' | 111.5° | 110.4° |
C3' | C2' | C1' | 135.1° | 113.0° |
C3' | C2' | H2' | 103.4° | 111.2° |
C3' | C2' | H2'' | 103.5° | 110.6° |
O3' | C3' | H3' | 107.9° | 106.9° |
C3' | O3' | HO3' | 111.7° | 106.3° |
C1' | C2' | H2' | 103.4° | 106.5° |
C1' | C2' | H2'' | 103.4° | 106.4° |
C2' | C1' | O1 | 158.8° | 125.0° |
C2' | C1' | H1' | 131.7° | 114.8° |
H2' | C2' | H2'' | 105.2° | 108.9° |
O1 | C1' | H1' | 69.6° | 120.2° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP1 | P | OP2 | OP3 | 95.3° | 126.3° |
OP1 | P | OP2 | O5' | 124.6° | 126.8° |
OP1 | P | OP3 | O5' | 100.5° | 125.8° |
OP1 | P | OP2 | HOP2 | 179.9° | 48.8° |
OP1 | P | OP3 | HOP3 | 180.0° | 48.1° |
OP1 | P | O5' | C5' | 177.8° | 180.0° |
OP2 | P | OP3 | O5' | 142.9° | 107.7° |
OP2 | P | OP3 | HOP3 | 63.5° | 78.5° |
OP2 | P | O5' | C5' | 50.7° | 53.1° |
OP3 | P | OP2 | HOP2 | 84.6° | 77.5° |
OP3 | P | O5' | C5' | 87.7° | 54.3° |
O5' | P | OP2 | HOP2 | 55.3° | 175.7° |
O5' | P | OP3 | HOP3 | 79.4° | 173.8° |
P | O5' | C5' | C4' | 153.9° | 180.0° |
P | O5' | C5' | H5' | 80.9° | 58.7° |
P | O5' | C5' | H5'' | 28.6° | 58.1° |
O5' | C5' | C4' | H5' | 125.3° | 118.6° |
O5' | C5' | C4' | H5'' | 125.3° | 119.2° |
O5' | C5' | H5' | H5'' | 117.7° | 116.0° |
O5' | C5' | C4' | O4' | 90.9° | 60.1° |
O5' | C5' | C4' | C3' | 128.3° | 178.6° |
O5' | C5' | C4' | H4' | 18.7° | 54.7° |
C4' | C5' | H5' | H5'' | 117.7° | 124.1° |
C5' | C4' | O4' | C3' | 129.4° | 124.8° |
C5' | C4' | O4' | H4' | 127.3° | 117.5° |
C5' | C4' | C3' | H4' | 127.3° | 123.8° |
C5' | C4' | O4' | H4'O | 180.0° | 178.8° |
C5' | C4' | C3' | C2' | 100.0° | 176.2° |
C5' | C4' | C3' | O3' | 140.1° | 63.7° |
C5' | C4' | C3' | H3' | 21.2° | 53.4° |
H5' | C5' | C4' | O4' | 34.4° | 178.7° |
H5' | C5' | C4' | C3' | 106.5° | 60.0° |
H5' | C5' | C4' | H4' | 143.9° | 63.8° |
H5'' | C5' | C4' | O4' | 143.8° | 59.1° |
H5'' | C5' | C4' | C3' | 3.0° | 62.2° |
H5'' | C5' | C4' | H4' | 106.6° | 173.9° |
O4' | C4' | C3' | H4' | 103.3° | 115.0° |
O4' | C4' | C3' | C2' | 29.4° | 55.0° |
O4' | C4' | C3' | O3' | 90.5° | 175.1° |
O4' | C4' | C3' | H3' | 150.5° | 67.8° |
C3' | C4' | O4' | H4'O | 50.6° | 54.0° |
C4' | C3' | C2' | O3' | 121.6° | 121.3° |
C4' | C3' | C2' | H3' | 119.5° | 122.1° |
C4' | C3' | O3' | H3' | 119.5° | 118.6° |
C4' | C3' | C2' | C1' | 112.7° | 177.9° |
C4' | C3' | C2' | H2' | 12.5° | 58.2° |
C4' | C3' | C2' | H2'' | 122.0° | 62.9° |
C4' | C3' | O3' | HO3' | 179.9° | 35.7° |
H4' | C4' | O4' | H4'O | 52.7° | 63.7° |
H4' | C4' | C3' | C2' | 132.7° | 60.0° |
H4' | C4' | C3' | O3' | 12.8° | 60.2° |
H4' | C4' | C3' | H3' | 106.2° | 177.3° |
C2' | C3' | O3' | H3' | 121.2° | 118.7° |
C3' | C2' | C1' | H2' | 125.3° | 122.3° |
C3' | C2' | C1' | H2'' | 125.3° | 121.6° |
C3' | C2' | H2' | H2'' | 108.2° | 122.1° |
C3' | C2' | C1' | O1 | 65.7° | 2.4° |
C3' | C2' | C1' | H1' | 114.3° | 177.9° |
C2' | C3' | O3' | HO3' | 60.6° | 87.0° |
O3' | C3' | C2' | C1' | 8.8° | 56.6° |
O3' | C3' | C2' | H2' | 134.1° | 63.1° |
O3' | C3' | C2' | H2'' | 116.4° | 175.8° |
H3' | C3' | C2' | C1' | 127.8° | 60.0° |
H3' | C3' | C2' | H2' | 106.9° | 179.6° |
H3' | C3' | C2' | H2'' | 2.5° | 59.2° |
H3' | C3' | O3' | HO3' | 60.6° | 154.3° |
C1' | C2' | H2' | H2'' | 108.1° | 114.4° |
C2' | C1' | O1 | H1' | 180.0° | 179.7° |
H2' | C2' | C1' | O1 | 169.0° | 120.0° |
H2' | C2' | C1' | H1' | 11.0° | 59.7° |
H2'' | C2' | C1' | O1 | 59.6° | 123.9° |
H2'' | C2' | C1' | H1' | 120.4° | 56.3° |