DRP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	O1P	doub	1.50Å	1.49Å
P	O2P	sing	1.62Å	1.49Å
P	O5'	sing	1.62Å	1.58Å
P	O3P	sing	1.62Å	42.20Å
O2P	HOP2	sing	0.98Å	0.95Å
O5'	C5'	sing	1.42Å	1.41Å
C1	C2	doub	1.39Å	1.40Å	Aromatic
C1	C6	sing	1.39Å	1.40Å	Aromatic
C1	C1'	sing	1.51Å	1.52Å
C2	N3	sing	1.35Å	1.33Å	Aromatic
C2	H2	sing	1.09Å	1.08Å
N3	C4	doub	1.35Å	1.34Å	Aromatic
C4	C5	sing	1.38Å	1.41Å	Aromatic
C4	H4	sing	1.08Å	1.08Å
C5	C6	doub	1.39Å	1.41Å	Aromatic
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.09Å	1.08Å
C2'	C1'	sing	1.53Å	1.51Å
C2'	C3'	sing	1.51Å	1.52Å
C2'	H2'1	sing	1.10Å	1.10Å
C2'	H2'2	sing	1.10Å	1.10Å
C5'	C4'	sing	1.52Å	1.51Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C3'	sing	1.52Å	1.53Å
C4'	H4'	sing	1.10Å	1.10Å
O4'	C1'	sing	1.44Å	1.42Å
C1'	H1'	sing	1.10Å	1.10Å
C3'	O3'	sing	1.41Å	1.44Å
C3'	H3'	sing	1.10Å	1.10Å
O3'	H3T	sing	0.97Å	0.95Å
O3P	HOP3	sing	0.98Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1P	P	O2P	120.7°	115.4°
O1P	P	O5'	106.8°	115.0°
O1P	P	O3P	62.3°	115.0°
O2P	P	O5'	108.9°	103.7°
O2P	P	O3P	161.4°	103.3°
P	O2P	HOP2	109.5°	118.9°
O5'	P	O3P	86.0°	102.9°
P	O5'	C5'	121.4°	118.5°
P	O3P	HOP3	62.3°	118.9°
O5'	C5'	C4'	109.4°	108.7°
O5'	C5'	H5'1	109.5°	109.2°
O5'	C5'	H5'2	109.5°	109.2°
C2	C1	C6	117.6°	117.8°
C2	C1	C1'	120.7°	121.1°
C1	C2	N3	122.8°	124.1°
C1	C2	H2	118.6°	121.2°
C6	C1	C1'	121.7°	121.1°
C1	C6	C5	119.1°	119.8°
C1	C6	H6	120.4°	120.6°
C1	C1'	C2'	116.3°	113.0°
C1	C1'	O4'	110.1°	111.1°
C1	C1'	H1'	102.8°	107.1°
N3	C2	H2	118.6°	114.7°
C2	N3	C4	120.8°	116.3°
N3	C4	C5	120.4°	124.1°
N3	C4	H4	119.8°	115.2°
C5	C4	H4	119.8°	120.8°
C4	C5	C6	119.2°	117.9°
C4	C5	H5	120.4°	121.1°
C6	C5	H5	120.4°	121.0°
C5	C6	H6	120.5°	119.6°
C1'	C2'	C3'	101.2°	103.0°
C1'	C2'	H2'1	114.1°	110.0°
C1'	C2'	H2'2	112.3°	114.4°
C2'	C1'	O4'	104.4°	106.8°
C2'	C1'	H1'	108.6°	110.5°
C3'	C2'	H2'1	114.1°	109.7°
C3'	C2'	H2'2	112.3°	112.9°
C2'	C3'	C4'	102.7°	101.4°
C2'	C3'	O3'	111.3°	111.3°
C2'	C3'	H3'	112.8°	110.5°
H2'1	C2'	H2'2	103.3°	106.7°
C4'	C5'	H5'1	109.5°	110.1°
C4'	C5'	H5'2	109.5°	110.1°
C5'	C4'	O4'	108.9°	109.7°
C5'	C4'	C3'	113.3°	113.6°
C5'	C4'	H4'	106.1°	108.6°
H5'1	C5'	H5'2	109.4°	109.6°
O4'	C4'	C3'	105.4°	105.5°
O4'	C4'	H4'	113.9°	108.1°
C4'	O4'	C1'	109.6°	108.6°
C3'	C4'	H4'	109.4°	111.1°
C4'	C3'	O3'	109.9°	112.4°
C4'	C3'	H3'	114.2°	111.7°
O4'	C1'	H1'	115.0°	108.2°
O3'	C3'	H3'	106.0°	109.3°
C3'	O3'	H3T	109.5°	106.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1P	P	O2P	O5'	124.0°	126.6°
O1P	P	O2P	O3P	94.0°	126.3°
O1P	P	O5'	O3P	59.5°	125.8°
O1P	P	O2P	HOP2	29.9°	48.8°
O1P	P	O5'	C5'	172.6°	180.0°
O1P	P	O3P	HOP3	180.0°	48.0°
O2P	P	O5'	O3P	168.6°	107.4°
O2P	P	O5'	C5'	55.5°	53.1°
O2P	P	O3P	HOP3	75.6°	78.6°
O5'	P	O2P	HOP2	94.1°	175.4°
P	O5'	C5'	C4'	168.3°	180.0°
P	O5'	C5'	H5'1	71.7°	59.8°
P	O5'	C5'	H5'2	48.2°	59.9°
O5'	P	O3P	HOP3	68.7°	173.7°
O3P	P	O2P	HOP2	123.9°	77.6°
O3P	P	O5'	C5'	113.1°	54.2°
O5'	C5'	C4'	H5'1	120.1°	119.5°
O5'	C5'	C4'	H5'2	120.0°	119.5°
O5'	C5'	H5'1	H5'2	120.0°	119.5°
O5'	C5'	C4'	O4'	68.9°	61.7°
O5'	C5'	C4'	C3'	174.1°	179.5°
O5'	C5'	C4'	H4'	54.1°	56.3°
C2	C1	C6	C1'	179.1°	180.0°
C1	C2	N3	H2	180.0°	180.0°
C1	C2	N3	C4	0.0°	0.0°
C2	C1	C6	C5	0.3°	0.0°
C2	C1	C6	H6	179.7°	180.0°
C2	C1	C1'	C2'	34.3°	92.0°
C2	C1	C1'	O4'	84.2°	147.9°
C2	C1	C1'	H1'	152.8°	30.0°
C6	C1	C2	N3	0.1°	0.0°
C6	C1	C2	H2	179.9°	180.0°
C1	C6	C5	C4	0.3°	0.0°
C1	C6	C5	H6	180.0°	180.0°
C1	C6	C5	H5	179.7°	180.0°
C6	C1	C1'	C2'	146.6°	88.0°
C6	C1	C1'	O4'	94.9°	32.1°
C6	C1	C1'	H1'	28.1°	150.0°
C1'	C1	C2	N3	179.2°	180.0°
C1'	C1	C2	H2	0.8°	0.0°
C1'	C1	C6	C5	179.4°	180.0°
C1'	C1	C6	H6	0.6°	0.1°
C1	C1'	C2'	O4'	121.5°	122.5°
C1	C1'	C2'	H1'	115.3°	120.0°
C1	C1'	C2'	C3'	161.1°	100.0°
C1	C1'	C2'	H2'1	38.2°	143.1°
C1	C1'	C2'	H2'2	78.9°	22.9°
C1	C1'	O4'	C4'	151.9°	124.5°
C1	C1'	O4'	H1'	115.5°	117.3°
C2	N3	C4	C5	0.0°	0.0°
C2	N3	C4	H4	180.0°	180.0°
H2	C2	N3	C4	179.9°	179.9°
N3	C4	C5	H4	180.0°	180.0°
N3	C4	C5	C6	0.2°	0.0°
N3	C4	C5	H5	179.8°	180.0°
C4	C5	C6	H5	180.0°	180.0°
C4	C5	C6	H6	179.7°	179.9°
H4	C4	C5	C6	179.8°	180.0°
H4	C4	C5	H5	0.2°	0.0°
H5	C5	C6	H6	0.3°	0.1°
C1'	C2'	C3'	H2'1	122.9°	117.1°
C1'	C2'	C3'	H2'2	120.0°	124.0°
C1'	C2'	H2'1	H2'2	122.2°	124.7°
C2'	C1'	O4'	C4'	26.4°	0.8°
C1'	C2'	C3'	C4'	37.5°	35.4°
C2'	C1'	O4'	H1'	119.0°	119.0°
C1'	C2'	C3'	O3'	80.1°	155.2°
C1'	C2'	C3'	H3'	160.8°	83.1°
C3'	C2'	H2'1	H2'2	122.2°	122.7°
C2'	C3'	C4'	C5'	96.2°	157.3°
C2'	C3'	C4'	O4'	22.7°	37.1°
C2'	C3'	C4'	O3'	118.6°	119.0°
C2'	C3'	C4'	H3'	122.5°	117.7°
C2'	C3'	C4'	H4'	145.6°	79.9°
C3'	C2'	C1'	O4'	39.6°	22.4°
C3'	C2'	C1'	H1'	83.6°	139.9°
C2'	C3'	O3'	H3'	123.0°	122.4°
C2'	C3'	O3'	H3T	14.4°	159.2°
H2'1	C2'	C3'	C4'	85.5°	81.7°
H2'1	C2'	C1'	O4'	83.3°	94.5°
H2'1	C2'	C1'	H1'	153.4°	23.0°
H2'1	C2'	C3'	O3'	157.0°	38.0°
H2'1	C2'	C3'	H3'	37.9°	159.8°
H2'2	C2'	C3'	C4'	157.5°	159.4°
H2'2	C2'	C1'	O4'	159.6°	145.4°
H2'2	C2'	C1'	H1'	36.4°	97.1°
H2'2	C2'	C3'	O3'	39.9°	80.9°
H2'2	C2'	C3'	H3'	79.1°	40.9°
C4'	C5'	H5'1	H5'2	120.0°	121.3°
C5'	C4'	O4'	C3'	121.9°	122.8°
C5'	C4'	O4'	H4'	118.1°	118.3°
C5'	C4'	C3'	H4'	118.1°	122.8°
C5'	C4'	O4'	C1'	124.0°	146.7°
C5'	C4'	C3'	O3'	145.2°	83.6°
C5'	C4'	C3'	H3'	26.2°	39.7°
H5'1	C5'	C4'	O4'	171.1°	57.9°
H5'1	C5'	C4'	C3'	54.1°	60.0°
H5'1	C5'	C4'	H4'	66.0°	175.8°
H5'2	C5'	C4'	O4'	51.2°	178.8°
H5'2	C5'	C4'	C3'	65.8°	60.9°
H5'2	C5'	C4'	H4'	174.1°	63.2°
O4'	C4'	C3'	H4'	122.9°	116.9°
C4'	O4'	C1'	H1'	92.6°	118.2°
O4'	C4'	C3'	O3'	95.8°	156.1°
O4'	C4'	C3'	H3'	145.2°	80.6°
C3'	C4'	O4'	C1'	2.1°	23.9°
C4'	C3'	O3'	H3'	123.8°	124.6°
C4'	C3'	O3'	H3T	127.5°	46.2°
H4'	C4'	O4'	C1'	117.9°	95.1°
H4'	C4'	C3'	O3'	27.0°	39.1°
H4'	C4'	C3'	H3'	91.9°	162.5°
H3'	C3'	O3'	H3T	108.7°	78.4°

Definition date:	2001-06-25
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB