DRP
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | O1P | doub | 1.50Å | 1.49Å | |
P | O2P | sing | 1.62Å | 1.49Å | |
P | O5' | sing | 1.62Å | 1.58Å | |
P | O3P | sing | 1.62Å | 42.20Å | |
O2P | HOP2 | sing | 0.98Å | 0.95Å | |
O5' | C5' | sing | 1.42Å | 1.41Å | |
C1 | C2 | doub | 1.39Å | 1.40Å | Aromatic |
C1 | C6 | sing | 1.39Å | 1.40Å | Aromatic |
C1 | C1' | sing | 1.51Å | 1.52Å | |
C2 | N3 | sing | 1.35Å | 1.33Å | Aromatic |
C2 | H2 | sing | 1.09Å | 1.08Å | |
N3 | C4 | doub | 1.35Å | 1.34Å | Aromatic |
C4 | C5 | sing | 1.38Å | 1.41Å | Aromatic |
C4 | H4 | sing | 1.08Å | 1.08Å | |
C5 | C6 | doub | 1.39Å | 1.41Å | Aromatic |
C5 | H5 | sing | 1.08Å | 1.08Å | |
C6 | H6 | sing | 1.09Å | 1.08Å | |
C2' | C1' | sing | 1.53Å | 1.51Å | |
C2' | C3' | sing | 1.51Å | 1.52Å | |
C2' | H2'1 | sing | 1.10Å | 1.10Å | |
C2' | H2'2 | sing | 1.10Å | 1.10Å | |
C5' | C4' | sing | 1.52Å | 1.51Å | |
C5' | H5'1 | sing | 1.09Å | 1.10Å | |
C5' | H5'2 | sing | 1.09Å | 1.10Å | |
C4' | O4' | sing | 1.44Å | 1.45Å | |
C4' | C3' | sing | 1.52Å | 1.53Å | |
C4' | H4' | sing | 1.10Å | 1.10Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
C1' | H1' | sing | 1.10Å | 1.10Å | |
C3' | O3' | sing | 1.41Å | 1.44Å | |
C3' | H3' | sing | 1.10Å | 1.10Å | |
O3' | H3T | sing | 0.97Å | 0.95Å | |
O3P | HOP3 | sing | 0.98Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O1P | P | O2P | 120.7° | 115.4° |
O1P | P | O5' | 106.8° | 115.0° |
O1P | P | O3P | 62.3° | 115.0° |
O2P | P | O5' | 108.9° | 103.7° |
O2P | P | O3P | 161.4° | 103.3° |
P | O2P | HOP2 | 109.5° | 118.9° |
O5' | P | O3P | 86.0° | 102.9° |
P | O5' | C5' | 121.4° | 118.5° |
P | O3P | HOP3 | 62.3° | 118.9° |
O5' | C5' | C4' | 109.4° | 108.7° |
O5' | C5' | H5'1 | 109.5° | 109.2° |
O5' | C5' | H5'2 | 109.5° | 109.2° |
C2 | C1 | C6 | 117.6° | 117.8° |
C2 | C1 | C1' | 120.7° | 121.1° |
C1 | C2 | N3 | 122.8° | 124.1° |
C1 | C2 | H2 | 118.6° | 121.2° |
C6 | C1 | C1' | 121.7° | 121.1° |
C1 | C6 | C5 | 119.1° | 119.8° |
C1 | C6 | H6 | 120.4° | 120.6° |
C1 | C1' | C2' | 116.3° | 113.0° |
C1 | C1' | O4' | 110.1° | 111.1° |
C1 | C1' | H1' | 102.8° | 107.1° |
N3 | C2 | H2 | 118.6° | 114.7° |
C2 | N3 | C4 | 120.8° | 116.3° |
N3 | C4 | C5 | 120.4° | 124.1° |
N3 | C4 | H4 | 119.8° | 115.2° |
C5 | C4 | H4 | 119.8° | 120.8° |
C4 | C5 | C6 | 119.2° | 117.9° |
C4 | C5 | H5 | 120.4° | 121.1° |
C6 | C5 | H5 | 120.4° | 121.0° |
C5 | C6 | H6 | 120.5° | 119.6° |
C1' | C2' | C3' | 101.2° | 103.0° |
C1' | C2' | H2'1 | 114.1° | 110.0° |
C1' | C2' | H2'2 | 112.3° | 114.4° |
C2' | C1' | O4' | 104.4° | 106.8° |
C2' | C1' | H1' | 108.6° | 110.5° |
C3' | C2' | H2'1 | 114.1° | 109.7° |
C3' | C2' | H2'2 | 112.3° | 112.9° |
C2' | C3' | C4' | 102.7° | 101.4° |
C2' | C3' | O3' | 111.3° | 111.3° |
C2' | C3' | H3' | 112.8° | 110.5° |
H2'1 | C2' | H2'2 | 103.3° | 106.7° |
C4' | C5' | H5'1 | 109.5° | 110.1° |
C4' | C5' | H5'2 | 109.5° | 110.1° |
C5' | C4' | O4' | 108.9° | 109.7° |
C5' | C4' | C3' | 113.3° | 113.6° |
C5' | C4' | H4' | 106.1° | 108.6° |
H5'1 | C5' | H5'2 | 109.4° | 109.6° |
O4' | C4' | C3' | 105.4° | 105.5° |
O4' | C4' | H4' | 113.9° | 108.1° |
C4' | O4' | C1' | 109.6° | 108.6° |
C3' | C4' | H4' | 109.4° | 111.1° |
C4' | C3' | O3' | 109.9° | 112.4° |
C4' | C3' | H3' | 114.2° | 111.7° |
O4' | C1' | H1' | 115.0° | 108.2° |
O3' | C3' | H3' | 106.0° | 109.3° |
C3' | O3' | H3T | 109.5° | 106.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O1P | P | O2P | O5' | 124.0° | 126.6° |
O1P | P | O2P | O3P | 94.0° | 126.3° |
O1P | P | O5' | O3P | 59.5° | 125.8° |
O1P | P | O2P | HOP2 | 29.9° | 48.8° |
O1P | P | O5' | C5' | 172.6° | 180.0° |
O1P | P | O3P | HOP3 | 180.0° | 48.0° |
O2P | P | O5' | O3P | 168.6° | 107.4° |
O2P | P | O5' | C5' | 55.5° | 53.1° |
O2P | P | O3P | HOP3 | 75.6° | 78.6° |
O5' | P | O2P | HOP2 | 94.1° | 175.4° |
P | O5' | C5' | C4' | 168.3° | 180.0° |
P | O5' | C5' | H5'1 | 71.7° | 59.8° |
P | O5' | C5' | H5'2 | 48.2° | 59.9° |
O5' | P | O3P | HOP3 | 68.7° | 173.7° |
O3P | P | O2P | HOP2 | 123.9° | 77.6° |
O3P | P | O5' | C5' | 113.1° | 54.2° |
O5' | C5' | C4' | H5'1 | 120.1° | 119.5° |
O5' | C5' | C4' | H5'2 | 120.0° | 119.5° |
O5' | C5' | H5'1 | H5'2 | 120.0° | 119.5° |
O5' | C5' | C4' | O4' | 68.9° | 61.7° |
O5' | C5' | C4' | C3' | 174.1° | 179.5° |
O5' | C5' | C4' | H4' | 54.1° | 56.3° |
C2 | C1 | C6 | C1' | 179.1° | 180.0° |
C1 | C2 | N3 | H2 | 180.0° | 180.0° |
C1 | C2 | N3 | C4 | 0.0° | 0.0° |
C2 | C1 | C6 | C5 | 0.3° | 0.0° |
C2 | C1 | C6 | H6 | 179.7° | 180.0° |
C2 | C1 | C1' | C2' | 34.3° | 92.0° |
C2 | C1 | C1' | O4' | 84.2° | 147.9° |
C2 | C1 | C1' | H1' | 152.8° | 30.0° |
C6 | C1 | C2 | N3 | 0.1° | 0.0° |
C6 | C1 | C2 | H2 | 179.9° | 180.0° |
C1 | C6 | C5 | C4 | 0.3° | 0.0° |
C1 | C6 | C5 | H6 | 180.0° | 180.0° |
C1 | C6 | C5 | H5 | 179.7° | 180.0° |
C6 | C1 | C1' | C2' | 146.6° | 88.0° |
C6 | C1 | C1' | O4' | 94.9° | 32.1° |
C6 | C1 | C1' | H1' | 28.1° | 150.0° |
C1' | C1 | C2 | N3 | 179.2° | 180.0° |
C1' | C1 | C2 | H2 | 0.8° | 0.0° |
C1' | C1 | C6 | C5 | 179.4° | 180.0° |
C1' | C1 | C6 | H6 | 0.6° | 0.1° |
C1 | C1' | C2' | O4' | 121.5° | 122.5° |
C1 | C1' | C2' | H1' | 115.3° | 120.0° |
C1 | C1' | C2' | C3' | 161.1° | 100.0° |
C1 | C1' | C2' | H2'1 | 38.2° | 143.1° |
C1 | C1' | C2' | H2'2 | 78.9° | 22.9° |
C1 | C1' | O4' | C4' | 151.9° | 124.5° |
C1 | C1' | O4' | H1' | 115.5° | 117.3° |
C2 | N3 | C4 | C5 | 0.0° | 0.0° |
C2 | N3 | C4 | H4 | 180.0° | 180.0° |
H2 | C2 | N3 | C4 | 179.9° | 179.9° |
N3 | C4 | C5 | H4 | 180.0° | 180.0° |
N3 | C4 | C5 | C6 | 0.2° | 0.0° |
N3 | C4 | C5 | H5 | 179.8° | 180.0° |
C4 | C5 | C6 | H5 | 180.0° | 180.0° |
C4 | C5 | C6 | H6 | 179.7° | 179.9° |
H4 | C4 | C5 | C6 | 179.8° | 180.0° |
H4 | C4 | C5 | H5 | 0.2° | 0.0° |
H5 | C5 | C6 | H6 | 0.3° | 0.1° |
C1' | C2' | C3' | H2'1 | 122.9° | 117.1° |
C1' | C2' | C3' | H2'2 | 120.0° | 124.0° |
C1' | C2' | H2'1 | H2'2 | 122.2° | 124.7° |
C2' | C1' | O4' | C4' | 26.4° | 0.8° |
C1' | C2' | C3' | C4' | 37.5° | 35.4° |
C2' | C1' | O4' | H1' | 119.0° | 119.0° |
C1' | C2' | C3' | O3' | 80.1° | 155.2° |
C1' | C2' | C3' | H3' | 160.8° | 83.1° |
C3' | C2' | H2'1 | H2'2 | 122.2° | 122.7° |
C2' | C3' | C4' | C5' | 96.2° | 157.3° |
C2' | C3' | C4' | O4' | 22.7° | 37.1° |
C2' | C3' | C4' | O3' | 118.6° | 119.0° |
C2' | C3' | C4' | H3' | 122.5° | 117.7° |
C2' | C3' | C4' | H4' | 145.6° | 79.9° |
C3' | C2' | C1' | O4' | 39.6° | 22.4° |
C3' | C2' | C1' | H1' | 83.6° | 139.9° |
C2' | C3' | O3' | H3' | 123.0° | 122.4° |
C2' | C3' | O3' | H3T | 14.4° | 159.2° |
H2'1 | C2' | C3' | C4' | 85.5° | 81.7° |
H2'1 | C2' | C1' | O4' | 83.3° | 94.5° |
H2'1 | C2' | C1' | H1' | 153.4° | 23.0° |
H2'1 | C2' | C3' | O3' | 157.0° | 38.0° |
H2'1 | C2' | C3' | H3' | 37.9° | 159.8° |
H2'2 | C2' | C3' | C4' | 157.5° | 159.4° |
H2'2 | C2' | C1' | O4' | 159.6° | 145.4° |
H2'2 | C2' | C1' | H1' | 36.4° | 97.1° |
H2'2 | C2' | C3' | O3' | 39.9° | 80.9° |
H2'2 | C2' | C3' | H3' | 79.1° | 40.9° |
C4' | C5' | H5'1 | H5'2 | 120.0° | 121.3° |
C5' | C4' | O4' | C3' | 121.9° | 122.8° |
C5' | C4' | O4' | H4' | 118.1° | 118.3° |
C5' | C4' | C3' | H4' | 118.1° | 122.8° |
C5' | C4' | O4' | C1' | 124.0° | 146.7° |
C5' | C4' | C3' | O3' | 145.2° | 83.6° |
C5' | C4' | C3' | H3' | 26.2° | 39.7° |
H5'1 | C5' | C4' | O4' | 171.1° | 57.9° |
H5'1 | C5' | C4' | C3' | 54.1° | 60.0° |
H5'1 | C5' | C4' | H4' | 66.0° | 175.8° |
H5'2 | C5' | C4' | O4' | 51.2° | 178.8° |
H5'2 | C5' | C4' | C3' | 65.8° | 60.9° |
H5'2 | C5' | C4' | H4' | 174.1° | 63.2° |
O4' | C4' | C3' | H4' | 122.9° | 116.9° |
C4' | O4' | C1' | H1' | 92.6° | 118.2° |
O4' | C4' | C3' | O3' | 95.8° | 156.1° |
O4' | C4' | C3' | H3' | 145.2° | 80.6° |
C3' | C4' | O4' | C1' | 2.1° | 23.9° |
C4' | C3' | O3' | H3' | 123.8° | 124.6° |
C4' | C3' | O3' | H3T | 127.5° | 46.2° |
H4' | C4' | O4' | C1' | 117.9° | 95.1° |
H4' | C4' | C3' | O3' | 27.0° | 39.1° |
H4' | C4' | C3' | H3' | 91.9° | 162.5° |
H3' | C3' | O3' | H3T | 108.7° | 78.4° |