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SummaryGeometryRelated PDB entries

DRO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CBFCBGdoub1.38Å1.39ÅAromatic
CBFCBEsing1.39Å1.40ÅAromatic
CBGCBHsing1.38Å1.39ÅAromatic
CBHCBIdoub1.38Å1.39ÅAromatic
CBICBJsing1.38Å1.41ÅAromatic
CBJCBEdoub1.39Å1.40ÅAromatic
CBENBBsing1.40Å1.37Å
NBBCBDsing1.40Å1.38Å
NBBCBAsing1.35Å1.34Å
CBDCBKsing1.39Å1.41ÅAromatic
CBDCBOdoub1.39Å1.40ÅAromatic
CBKCBLdoub1.38Å1.41ÅAromatic
CBLCBMsing1.38Å1.40ÅAromatic
CBMCBNdoub1.38Å1.40ÅAromatic
CBNCBOsing1.38Å1.41ÅAromatic
CBAOBCdoub1.22Å1.23Å
CBACAHsing1.48Å1.56Å
CAHNAGdoub1.32Å1.34ÅAromatic
CAHCAIsing1.42Å1.38ÅAromatic
NAGNAFsing1.28Å1.24ÅAromatic
CAICL1sing1.74Å1.74Å
CAICAJdoub1.35Å1.39ÅAromatic
CAJCAKsing1.51Å1.54Å
CAJNAFsing1.36Å1.35ÅAromatic
NAFCAEsing1.40Å1.35ÅAromatic
CAECAAsing1.39Å1.39ÅAromatic
CAECADdoub1.40Å1.41ÅAromatic
CAACABdoub1.38Å1.40ÅAromatic
CABCACsing1.39Å1.39ÅAromatic
CACCAYdoub1.38Å1.38ÅAromatic
CAYCADsing1.40Å1.40ÅAromatic
CADCALsing1.48Å1.54Å
CALOANdoub1.22Å1.24Å
CALNAMsing1.35Å1.35Å
NAMCAQsing1.47Å1.52Å
NAMCAOsing1.47Å1.49Å
CAQCARsing1.51Å1.56Å
CARCAWsing1.39Å1.41ÅAromatic
CARCASdoub1.38Å1.40ÅAromatic
CAWCAVdoub1.38Å1.40ÅAromatic
CAVCAUsing1.38Å1.38ÅAromatic
CAUCATdoub1.38Å1.39ÅAromatic
CATCASsing1.39Å1.41ÅAromatic
CASCAPsing1.51Å1.53Å
CAPCAOsing1.52Å1.54Å
CAOCAXsing1.53Å1.54Å
CAXNAZsing1.47Å1.46Å
CBFHBFsing1.08Å1.08Å
CBGHBGsing1.08Å1.08Å
CBHHBHsing1.08Å1.08Å
CBIHBIsing1.08Å1.08Å
CBJHBJsing1.08Å1.08Å
CBKHBKsing1.08Å1.08Å
CBOHBOsing1.08Å1.08Å
CBLHBLsing1.08Å1.08Å
CBMHBMsing1.08Å1.08Å
CBNHBNsing1.08Å1.08Å
CAKHAK1sing1.09Å1.10Å
CAKHAK2sing1.09Å1.10Å
CAKHAK3sing1.09Å1.10Å
CAAHAAsing1.08Å1.08Å
CABHABsing1.08Å1.08Å
CACHACsing1.08Å1.08Å
CAYHAYsing1.08Å1.08Å
CAQHAQ1sing1.09Å1.10Å
CAQHAQ2sing1.09Å1.10Å
CAOHAOsing1.09Å1.10Å
CAWHAWsing1.08Å1.08Å
CAVHAVsing1.08Å1.08Å
CAUHAUsing1.08Å1.08Å
CATHATsing1.08Å1.08Å
CAPHAP1sing1.09Å1.10Å
CAPHAP2sing1.09Å1.10Å
CAXHAX1sing1.09Å1.10Å
CAXHAX2sing1.09Å1.10Å
NAZHAZ1sing1.01Å1.00Å
NAZHAZ2sing1.01Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CBGCBFCBE119.4°120.0°
CBFCBGCBH120.5°120.1°
CBGCBFHBF120.3°120.0°
CBFCBGHBG119.8°119.9°
CBFCBECBJ119.4°119.8°
CBFCBENBB119.4°120.1°
CBECBFHBF120.3°120.0°
CBGCBHCBI121.7°120.2°
CBHCBGHBG119.7°120.0°
CBGCBHHBH119.1°120.0°
CBHCBICBJ117.4°120.0°
CBICBHHBH119.1°119.9°
CBHCBIHBI121.3°120.0°
CBICBJCBE121.5°120.0°
CBJCBIHBI121.3°120.0°
CBICBJHBJ119.2°120.0°
CBJCBENBB121.1°120.1°
CBECBJHBJ119.2°120.1°
CBENBBCBD117.2°120.0°
CBENBBCBA124.8°120.0°
CBDNBBCBA117.9°120.0°
NBBCBDCBK117.8°120.1°
NBBCBDCBO124.5°120.1°
NBBCBAOBC120.7°120.0°
NBBCBACAH121.4°120.0°
CBKCBDCBO117.5°119.8°
CBDCBKCBL121.4°119.9°
CBDCBKHBK119.3°120.0°
CBDCBOCBN121.5°120.0°
CBDCBOHBO119.3°120.1°
CBKCBLCBM120.0°120.1°
CBLCBKHBK119.3°120.0°
CBKCBLHBL120.0°120.0°
CBLCBMCBN119.3°120.2°
CBMCBLHBL120.0°120.0°
CBLCBMHBM120.3°119.9°
CBMCBNCBO120.2°120.0°
CBNCBMHBM120.4°119.9°
CBMCBNHBN119.9°120.0°
CBNCBOHBO119.2°120.0°
CBOCBNHBN119.9°120.0°
OBCCBACAH117.7°120.0°
CBACAHNAG124.9°126.5°
CBACAHCAI128.2°126.4°
NAGCAHCAI106.4°107.1°
CAHNAGNAF111.6°110.2°
CAHCAICL1125.7°127.3°
CAHCAICAJ105.0°105.5°
NAGNAFCAJ110.2°110.1°
NAGNAFCAE122.2°125.0°
CL1CAICAJ129.2°127.2°
CAICAJCAK125.9°126.4°
CAICAJNAF106.7°107.1°
CAKCAJNAF127.4°126.5°
CAJCAKHAK1109.5°109.5°
CAJCAKHAK2109.4°109.5°
CAJCAKHAK3109.5°109.5°
CAJNAFCAE127.6°124.9°
NAFCAECAA122.1°120.2°
NAFCAECAD119.6°120.1°
CAACAECAD118.3°119.7°
CAECAACAB120.2°120.1°
CAECAAHAA119.9°120.0°
CAECADCAY121.1°119.6°
CAECADCAL119.5°120.2°
CAACABCAC120.6°120.4°
CABCAAHAA119.9°119.9°
CAACABHAB119.7°119.8°
CABCACCAY120.2°120.3°
CACCABHAB119.7°119.8°
CABCACHAC119.9°119.8°
CACCAYCAD119.5°119.9°
CAYCACHAC119.9°119.9°
CACCAYHAY120.2°120.0°
CAYCADCAL119.4°120.2°
CADCAYHAY120.3°120.1°
CADCALOAN120.0°120.0°
CADCALNAM121.8°120.0°
OANCALNAM118.3°120.0°
CALNAMCAQ124.1°121.3°
CALNAMCAO117.5°121.4°
CAQNAMCAO118.4°117.3°
NAMCAQCAR108.2°109.7°
NAMCAQHAQ1109.9°109.4°
NAMCAQHAQ2110.2°109.5°
NAMCAOCAP108.9°108.2°
NAMCAOCAX110.7°109.8°
NAMCAOHAO109.2°109.8°
CAQCARCAW119.0°117.8°
CAQCARCAS123.1°122.4°
CARCAQHAQ1109.9°109.4°
CARCAQHAQ2110.2°109.4°
CAWCARCAS117.9°119.9°
CARCAWCAV121.4°120.5°
CARCAWHAW119.3°119.8°
CARCASCAT120.3°119.5°
CARCASCAP123.2°122.9°
CAWCAVCAU119.8°119.7°
CAVCAWHAW119.3°119.7°
CAWCAVHAV120.1°120.1°
CAVCAUCAT119.8°119.8°
CAUCAVHAV120.1°120.2°
CAVCAUHAU120.1°120.1°
CAUCATCAS120.7°120.6°
CATCAUHAU120.1°120.1°
CAUCATHAT119.6°119.7°
CATCASCAP116.5°117.6°
CASCATHAT119.6°119.7°
CASCAPCAO109.0°110.9°
CASCAPHAP1109.6°109.2°
CASCAPHAP2109.7°109.2°
CAPCAOCAX109.9°109.6°
CAPCAOHAO110.0°109.7°
CAOCAPHAP1109.6°109.3°
CAOCAPHAP2109.7°109.1°
CAOCAXNAZ109.1°109.5°
CAXCAOHAO108.2°109.8°
CAOCAXHAX1109.6°109.5°
CAOCAXHAX2109.6°109.5°
NAZCAXHAX1109.6°109.5°
NAZCAXHAX2109.6°109.5°
CAXNAZHAZ1109.5°111.0°
CAXNAZHAZ2109.5°111.0°
HAK1CAKHAK2109.5°109.5°
HAK1CAKHAK3109.5°109.4°
HAK2CAKHAK3109.5°109.5°
HAQ1CAQHAQ2108.5°109.4°
HAP1CAPHAP2109.1°109.2°
HAX1CAXHAX2109.3°109.4°
HAZ1NAZHAZ2109.5°111.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CBGCBFCBEHBF180.0°179.8°
CBFCBGCBHHBG180.0°180.0°
CBFCBGCBHCBI0.7°0.0°
CBGCBFCBECBJ3.2°0.0°
CBGCBFCBENBB179.1°180.0°
CBFCBGCBHHBH179.3°180.0°
CBECBFCBGCBH2.3°0.0°
CBFCBECBJCBI2.7°0.0°
CBFCBECBJNBB175.8°180.0°
CBFCBENBBCBD110.8°112.4°
CBFCBENBBCBA71.5°67.6°
CBECBFCBGHBG177.7°180.0°
CBFCBECBJHBJ177.3°180.0°
CBGCBHCBIHBH180.0°180.0°
CBGCBHCBICBJ0.2°0.0°
CBHCBGCBFHBF177.8°179.7°
CBGCBHCBIHBI179.8°180.0°
CBHCBICBJHBI180.0°180.0°
CBHCBICBJCBE1.2°0.0°
CBICBHCBGHBG179.3°180.0°
CBHCBICBJHBJ178.8°180.0°
CBICBJCBEHBJ180.0°180.0°
CBICBJCBENBB178.5°180.0°
CBJCBICBHHBH179.8°180.0°
CBJCBENBBCBD65.0°67.6°
CBJCBENBBCBA112.7°112.4°
CBJCBECBFHBF176.8°179.8°
CBECBJCBIHBI178.8°180.0°
CBENBBCBDCBA177.8°180.0°
CBENBBCBDCBK113.1°111.0°
CBENBBCBDCBO61.7°68.8°
CBENBBCBAOBC179.0°4.4°
CBENBBCBACAH2.9°175.5°
NBBCBECBFHBF1.0°0.2°
NBBCBECBJHBJ1.5°0.0°
NBBCBDCBKCBO175.2°179.8°
NBBCBDCBKCBL178.6°180.0°
NBBCBDCBOCBN177.5°179.7°
CBDNBBCBAOBC1.3°175.6°
CBDNBBCBACAH174.7°4.5°
NBBCBDCBKHBK1.5°0.1°
NBBCBDCBOHBO2.5°0.0°
CBANBBCBDCBK64.7°69.0°
CBANBBCBDCBO120.5°111.3°
NBBCBAOBCCAH176.2°179.9°
NBBCBACAHNAG44.7°77.0°
NBBCBACAHCAI144.5°103.3°
CBDCBKCBLHBK180.0°179.9°
CBDCBKCBLCBM1.9°0.1°
CBKCBDCBOCBN2.6°0.6°
CBKCBDCBOHBO177.4°179.7°
CBDCBKCBLHBL178.1°180.0°
CBOCBDCBKCBL3.4°0.2°
CBDCBOCBNCBM0.4°0.6°
CBDCBOCBNHBO180.0°179.7°
CBOCBDCBKHBK176.7°179.7°
CBDCBOCBNHBN179.7°179.7°
CBKCBLCBMHBL180.0°180.0°
CBKCBLCBMCBN0.5°0.1°
CBKCBLCBMHBM179.5°180.0°
CBLCBMCBNHBM180.0°180.0°
CBLCBMCBNCBO1.2°0.3°
CBMCBLCBKHBK178.1°180.0°
CBLCBMCBNHBN178.8°180.0°
CBMCBNCBOHBN180.0°179.7°
CBMCBNCBOHBO179.6°179.7°
CBNCBMCBLHBL179.5°180.0°
CBOCBNCBMHBM178.7°179.7°
OBCCBACAHNAG131.5°102.9°
OBCCBACAHCAI39.3°76.8°
CBACAHNAGCAI172.5°179.8°
CBACAHNAGNAF175.8°180.0°
CBACAHCAICL17.3°0.0°
CBACAHCAICAJ175.8°180.0°
NAGCAHCAICL1179.4°179.8°
NAGCAHCAICAJ3.7°0.2°
CAHNAGNAFCAJ1.6°0.2°
CAHNAGNAFCAE178.8°180.0°
CAICAHNAGNAF3.4°0.2°
CAHCAICL1CAJ176.1°180.0°
CAHCAICAJCAK178.3°180.0°
CAHCAICAJNAF2.8°0.1°
NAGNAFCAJCAI0.9°0.0°
NAGNAFCAJCAK179.8°179.9°
NAGNAFCAJCAE179.6°179.9°
NAGNAFCAECAA113.7°131.9°
NAGNAFCAECAD64.1°47.8°
CL1CAICAJCAK1.5°0.0°
CL1CAICAJNAF179.6°179.9°
CAICAJCAKNAF178.7°179.9°
CAICAJNAFCAE178.8°179.9°
CAICAJCAKHAK1111.2°95.0°
CAICAJCAKHAK2128.8°145.0°
CAICAJCAKHAK38.8°24.9°
CAKCAJNAFCAE0.2°0.0°
CAJCAKHAK1HAK2120.0°120.0°
CAJCAKHAK1HAK3120.0°120.0°
CAJCAKHAK2HAK3120.0°120.0°
CAJNAFCAECAA66.7°48.3°
CAJNAFCAECAD115.4°132.1°
NAFCAJCAKHAK167.5°85.1°
NAFCAJCAKHAK252.5°34.9°
NAFCAJCAKHAK3172.5°154.9°
NAFCAECAACAD177.9°179.7°
NAFCAECAACAB179.7°180.0°
NAFCAECADCAY179.7°179.7°
NAFCAECADCAL1.0°0.1°
NAFCAECAAHAA0.3°0.1°
CAECAACABHAA180.0°180.0°
CAECAACABCAC1.4°0.0°
CAACAECADCAY2.3°0.6°
CAACAECADCAL179.0°179.7°
CAECAACABHAB178.6°180.0°
CADCAECAACAB2.4°0.3°
CAECADCAYCAC1.2°0.6°
CAECADCAYCAL178.7°179.6°
CAECADCALOAN67.0°45.5°
CAECADCALNAM111.7°134.5°
CADCAECAAHAA177.6°179.7°
CAECADCAYHAY178.8°179.6°
CAACABCACHAB180.0°179.9°
CAACABCACCAY0.2°0.1°
CAACABCACHAC179.9°180.0°
CABCACCAYHAC180.0°180.0°
CABCACCAYCAD0.0°0.2°
CACCABCAAHAA178.6°179.9°
CABCACCAYHAY180.0°180.0°
CACCAYCADHAY180.0°179.8°
CACCAYCADCAL179.9°179.8°
CAYCACCABHAB179.9°180.0°
CAYCADCALOAN111.7°134.2°
CAYCADCALNAM69.6°45.9°
CADCAYCACHAC180.0°179.7°
CADCALOANNAM178.7°180.0°
CADCALNAMCAQ1.6°5.9°
CADCALNAMCAO178.7°174.4°
CALCADCAYHAY0.1°0.0°
OANCALNAMCAQ177.1°174.0°
OANCALNAMCAO0.0°5.6°
CALNAMCAQCAO177.1°179.7°
CALNAMCAQCAR138.8°135.6°
CALNAMCAOCAP113.3°115.7°
CALNAMCAOCAX125.8°3.9°
CALNAMCAQHAQ118.8°104.4°
CALNAMCAQHAQ2100.7°15.5°
CALNAMCAOHAO6.8°124.6°
NAMCAQCARHAQ1120.0°120.0°
NAMCAQCARHAQ2120.5°120.1°
NAMCAQCARCAW175.4°168.5°
NAMCAQCARCAS6.1°11.6°
CAQNAMCAOCAP64.0°63.9°
CAQNAMCAOCAX56.9°176.5°
NAMCAQHAQ1HAQ2120.5°120.0°
CAQNAMCAOHAO175.9°55.7°
CAONAMCAQCAR38.2°44.1°
NAMCAOCAPCAS52.0°47.3°
NAMCAOCAPCAX121.4°119.7°
NAMCAOCAPHAO119.6°119.7°
NAMCAOCAXHAO119.6°120.7°
NAMCAOCAXNAZ107.6°64.4°
CAONAMCAQHAQ1158.2°75.9°
CAONAMCAQHAQ282.3°164.2°
NAMCAOCAPHAP168.1°167.7°
NAMCAOCAPHAP2172.1°73.0°
NAMCAOCAXHAX1132.5°175.6°
NAMCAOCAXHAX212.6°55.6°
CAQCARCAWCAS178.6°180.0°
CAQCARCAWCAV179.1°179.5°
CAQCARCASCAT179.4°179.2°
CAQCARCASCAP1.5°1.5°
CARCAQHAQ1HAQ2120.5°119.9°
CAQCARCAWHAW0.9°0.4°
CARCAWCAVHAW180.0°179.9°
CARCAWCAVCAU0.5°0.0°
CAWCARCASCAT0.9°0.8°
CAWCARCASCAP180.0°178.5°
CAWCARCAQHAQ155.4°71.5°
CAWCARCAQHAQ264.1°48.4°
CARCAWCAVHAV179.5°180.0°
CASCARCAWCAV0.5°0.5°
CARCASCATCAU1.3°0.5°
CARCASCATCAP179.1°179.3°
CARCASCAPCAO24.7°20.1°
CASCARCAQHAQ1126.1°108.5°
CASCARCAQHAQ2114.3°131.7°
CASCARCAWHAW179.4°179.6°
CARCASCATHAT178.7°179.5°
CARCASCAPHAP195.3°140.5°
CARCASCAPHAP2144.9°100.2°
CAWCAVCAUHAV180.0°180.0°
CAWCAVCAUCAT0.9°0.3°
CAWCAVCAUHAU179.1°179.7°
CAVCAUCATHAU180.0°180.0°
CAVCAUCATCAS1.3°0.0°
CAUCAVCAWHAW179.4°179.9°
CAVCAUCATHAT178.7°180.0°
CAUCATCASHAT180.0°180.0°
CAUCATCASCAP179.6°178.8°
CATCAUCAVHAV179.2°179.8°
CATCASCAPCAO156.2°160.6°
CASCATCAUHAU178.7°180.0°
CATCASCAPHAP183.8°40.2°
CATCASCAPHAP236.0°79.1°
CASCAPCAOHAP1120.0°120.4°
CASCAPCAOHAP2120.2°120.3°
CASCAPCAOCAX69.4°167.0°
CASCAPCAOHAO171.6°72.5°
CAPCASCATHAT0.4°1.2°
CASCAPHAP1HAP2120.2°119.3°
CAPCAOCAXHAO120.1°120.5°
CAPCAOCAXNAZ132.1°176.9°
CAOCAPHAP1HAP2120.2°119.3°
CAPCAOCAXHAX112.2°56.9°
CAPCAOCAXHAX2107.7°63.1°
CAOCAXNAZHAX1120.0°120.0°
CAOCAXNAZHAX2120.1°120.0°
CAXCAOCAPHAP1170.6°72.6°
CAXCAOCAPHAP250.8°46.7°
CAOCAXHAX1HAX2120.1°120.0°
CAOCAXNAZHAZ1161.7°167.9°
CAOCAXNAZHAZ278.3°44.1°
NAZCAXCAOHAO12.0°56.3°
NAZCAXHAX1HAX2120.1°120.0°
CAXNAZHAZ1HAZ2120.0°123.9°
HBFCBFCBGHBG2.2°0.2°
HBGCBGCBHHBH0.7°0.0°
HBHCBHCBIHBI0.2°0.0°
HBICBICBJHBJ1.2°0.0°
HBKCBKCBLHBL1.9°0.0°
HBOCBOCBNHBN0.3°0.0°
HBLCBLCBMHBM0.5°0.0°
HBMCBMCBNHBN1.3°0.0°
HAK1CAKHAK2HAK3120.0°119.9°
HAACAACABHAB1.4°0.0°
HABCABCACHAC0.1°0.0°
HACCACCAYHAY0.0°0.1°
HAOCAOCAPHAP151.6°47.9°
HAOCAOCAPHAP268.2°167.3°
HAOCAOCAXHAX1107.9°63.7°
HAOCAOCAXHAX2132.2°176.4°
HAWCAWCAVHAV0.5°0.1°
HAVCAVCAUHAU0.8°0.2°
HAUCAUCATHAT1.2°0.0°
HAX1CAXNAZHAZ141.7°72.1°
HAX1CAXNAZHAZ2161.7°164.1°
HAX2CAXNAZHAZ178.2°47.9°
HAX2CAXNAZHAZ241.8°76.0°

246704

PDB entries from 2025-12-24

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