DRM
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP2 | P | sing | 1.61Å | 1.49Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
P | OP1 | doub | 1.48Å | 1.54Å | |
P | OP3 | sing | 1.61Å | 1.55Å | |
P | C6' | sing | 1.82Å | 1.83Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
C6' | O5' | sing | 1.43Å | 1.42Å | |
C6' | H6'1 | sing | 1.09Å | 1.12Å | |
C6' | H6'2 | sing | 1.09Å | 1.12Å | |
O5' | C5' | sing | 1.43Å | 1.44Å | |
C5' | C4' | sing | 1.55Å | 1.49Å | |
C5' | C1' | sing | 1.54Å | 1.55Å | |
C5' | H5' | sing | 1.09Å | 1.12Å | |
C4' | C3' | sing | 1.55Å | 1.50Å | |
C4' | H4'1 | sing | 1.09Å | 1.11Å | |
C4' | H4'2 | sing | 1.09Å | 1.12Å | |
C3' | C2' | sing | 1.54Å | 1.49Å | |
C3' | H3'1 | sing | 1.09Å | 1.11Å | |
C3' | H3'2 | sing | 1.09Å | 1.11Å | |
C2' | C1' | sing | 1.54Å | 1.52Å | |
C2' | H2' | sing | 1.09Å | 1.11Å | |
C2' | H2'' | sing | 1.09Å | 1.12Å | |
C1' | N1 | sing | 1.47Å | 1.47Å | |
C1' | H1' | sing | 1.09Å | 1.11Å | |
N1 | C6 | sing | 1.37Å | 1.36Å | |
N1 | C2 | sing | 1.34Å | 1.41Å | |
C6 | C5 | doub | 1.35Å | 1.38Å | |
C6 | H6 | sing | 1.08Å | 1.10Å | |
C5 | C4 | sing | 1.42Å | 1.41Å | |
C5 | H5 | sing | 1.08Å | 1.10Å | |
C4 | O4 | doub | 1.22Å | 1.23Å | |
C4 | N3 | sing | 1.35Å | 1.36Å | |
N3 | C2 | sing | 1.34Å | 1.37Å | |
N3 | H3 | sing | 0.97Å | 1.02Å | |
C2 | O2 | doub | 1.22Å | 1.25Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
P | OP2 | HOP2 | 115.0° | 106.8° |
OP2 | P | OP1 | 115.0° | 109.5° |
OP2 | P | OP3 | 113.3° | 109.5° |
OP2 | P | C6' | 103.2° | 109.4° |
OP1 | P | OP3 | 109.8° | 109.5° |
OP1 | P | C6' | 107.3° | 109.5° |
OP3 | P | C6' | 107.7° | 109.5° |
P | OP3 | HOP3 | 113.3° | 106.8° |
P | C6' | O5' | 109.2° | 109.4° |
P | C6' | H6'1 | 112.3° | 109.5° |
P | C6' | H6'2 | 112.3° | 109.5° |
O5' | C6' | H6'1 | 112.3° | 109.5° |
O5' | C6' | H6'2 | 112.3° | 109.5° |
C6' | O5' | C5' | 115.0° | 106.8° |
H6'1 | C6' | H6'2 | 98.1° | 109.5° |
O5' | C5' | C4' | 98.8° | 110.5° |
O5' | C5' | C1' | 114.6° | 110.5° |
O5' | C5' | H5' | 112.4° | 110.4° |
C4' | C5' | C1' | 106.9° | 104.3° |
C4' | C5' | H5' | 119.4° | 110.5° |
C5' | C4' | C3' | 108.0° | 102.8° |
C5' | C4' | H4'1 | 112.7° | 110.8° |
C5' | C4' | H4'2 | 112.7° | 110.8° |
C1' | C5' | H5' | 105.0° | 110.5° |
C5' | C1' | C2' | 105.8° | 106.5° |
C5' | C1' | N1 | 114.0° | 110.3° |
C5' | C1' | H1' | 111.5° | 110.0° |
C3' | C4' | H4'1 | 112.8° | 110.8° |
C3' | C4' | H4'2 | 112.8° | 110.7° |
C4' | C3' | C2' | 107.5° | 104.2° |
C4' | C3' | H3'1 | 112.9° | 110.4° |
C4' | C3' | H3'2 | 113.0° | 110.5° |
H4'1 | C4' | H4'2 | 97.7° | 110.8° |
C2' | C3' | H3'1 | 112.9° | 110.5° |
C2' | C3' | H3'2 | 112.9° | 110.5° |
C3' | C2' | C1' | 107.1° | 106.6° |
C3' | C2' | H2' | 113.1° | 110.1° |
C3' | C2' | H2'' | 113.1° | 110.1° |
H3'1 | C3' | H3'2 | 97.5° | 110.6° |
C1' | C2' | H2' | 113.1° | 109.9° |
C1' | C2' | H2'' | 113.1° | 110.1° |
C2' | C1' | N1 | 115.9° | 110.0° |
C2' | C1' | H1' | 109.4° | 110.0° |
H2' | C2' | H2'' | 97.4° | 110.0° |
N1 | C1' | H1' | 100.3° | 110.0° |
C1' | N1 | C6 | 119.5° | 119.7° |
C1' | N1 | C2 | 121.4° | 119.7° |
C6 | N1 | C2 | 119.0° | 120.6° |
N1 | C6 | C5 | 119.3° | 119.7° |
N1 | C6 | H6 | 119.8° | 120.2° |
N1 | C2 | N3 | 122.3° | 121.0° |
N1 | C2 | O2 | 116.4° | 119.5° |
C5 | C6 | H6 | 120.9° | 120.1° |
C6 | C5 | C4 | 120.9° | 119.1° |
C6 | C5 | H5 | 118.5° | 120.5° |
C4 | C5 | H5 | 120.6° | 120.4° |
C5 | C4 | O4 | 120.8° | 120.3° |
C5 | C4 | N3 | 120.1° | 119.4° |
O4 | C4 | N3 | 119.1° | 120.3° |
C4 | N3 | C2 | 118.4° | 120.3° |
C4 | N3 | H3 | 120.7° | 119.9° |
C2 | N3 | H3 | 120.9° | 119.9° |
N3 | C2 | O2 | 121.4° | 119.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP2 | P | OP1 | OP3 | 129.2° | 120.0° |
OP2 | P | OP1 | C6' | 114.1° | 120.0° |
OP2 | P | OP3 | C6' | 113.4° | 120.0° |
OP2 | P | OP3 | HOP3 | 180.0° | 60.0° |
OP2 | P | C6' | O5' | 168.5° | 173.4° |
OP2 | P | C6' | H6'1 | 66.3° | 66.5° |
OP2 | P | C6' | H6'2 | 43.1° | 53.5° |
HOP2 | OP2 | P | OP1 | 180.0° | 60.0° |
HOP2 | OP2 | P | OP3 | 52.6° | 60.0° |
HOP2 | OP2 | P | C6' | 63.5° | 180.0° |
OP1 | P | OP3 | C6' | 116.5° | 120.0° |
OP1 | P | OP3 | HOP3 | 50.0° | 180.0° |
OP1 | P | C6' | O5' | 46.6° | 53.5° |
OP1 | P | C6' | H6'1 | 171.9° | 173.5° |
OP1 | P | C6' | H6'2 | 78.7° | 66.5° |
OP3 | P | C6' | O5' | 71.5° | 66.5° |
OP3 | P | C6' | H6'1 | 53.8° | 53.5° |
OP3 | P | C6' | H6'2 | 163.2° | 173.5° |
C6' | P | OP3 | HOP3 | 66.5° | 60.0° |
P | C6' | O5' | H6'1 | 125.3° | 120.0° |
P | C6' | O5' | H6'2 | 125.3° | 120.0° |
P | C6' | H6'1 | H6'2 | 118.2° | 120.0° |
P | C6' | O5' | C5' | 178.3° | 77.1° |
O5' | C6' | H6'1 | H6'2 | 118.2° | 120.0° |
C6' | O5' | C5' | C4' | 167.5° | 87.7° |
C6' | O5' | C5' | C1' | 79.2° | 157.3° |
C6' | O5' | C5' | H5' | 40.5° | 34.9° |
H6'1 | C6' | O5' | C5' | 53.0° | 42.9° |
H6'2 | C6' | O5' | C5' | 56.4° | 162.9° |
O5' | C5' | C4' | C1' | 119.1° | 118.7° |
O5' | C5' | C4' | H5' | 122.0° | 122.5° |
O5' | C5' | C1' | H5' | 123.8° | 122.4° |
O5' | C5' | C4' | C3' | 110.1° | 156.6° |
O5' | C5' | C4' | H4'1 | 15.2° | 85.0° |
O5' | C5' | C4' | H4'2 | 124.7° | 38.3° |
O5' | C5' | C1' | C2' | 112.8° | 142.2° |
O5' | C5' | C1' | N1 | 118.7° | 98.4° |
O5' | C5' | C1' | H1' | 6.0° | 23.1° |
C4' | C5' | C1' | H5' | 127.8° | 118.8° |
C5' | C4' | C3' | H4'1 | 125.2° | 118.4° |
C5' | C4' | C3' | H4'2 | 125.2° | 118.3° |
C5' | C4' | H4'1 | H4'2 | 118.6° | 123.3° |
C5' | C4' | C3' | C2' | 19.6° | 37.9° |
C5' | C4' | C3' | H3'1 | 105.6° | 80.7° |
C5' | C4' | C3' | H3'2 | 144.9° | 156.6° |
C4' | C5' | C1' | C2' | 4.4° | 23.5° |
C4' | C5' | C1' | N1 | 132.9° | 142.8° |
C4' | C5' | C1' | H1' | 114.4° | 95.7° |
C1' | C5' | C4' | C3' | 9.1° | 37.9° |
C1' | C5' | C4' | H4'1 | 134.4° | 156.2° |
C1' | C5' | C4' | H4'2 | 116.2° | 80.4° |
C5' | C1' | C2' | C3' | 16.4° | 0.2° |
C5' | C1' | C2' | N1 | 127.4° | 119.5° |
C5' | C1' | C2' | H1' | 120.2° | 119.2° |
C5' | C1' | C2' | H2' | 141.7° | 119.5° |
C5' | C1' | C2' | H2'' | 108.9° | 119.2° |
C5' | C1' | N1 | H1' | 119.2° | 121.5° |
C5' | C1' | N1 | C6 | 58.5° | 121.4° |
C5' | C1' | N1 | C2 | 119.3° | 58.8° |
H5' | C5' | C4' | C3' | 127.9° | 80.8° |
H5' | C5' | C4' | H4'1 | 106.8° | 37.5° |
H5' | C5' | C4' | H4'2 | 2.6° | 160.9° |
H5' | C5' | C1' | C2' | 123.4° | 95.3° |
H5' | C5' | C1' | N1 | 5.1° | 24.0° |
H5' | C5' | C1' | H1' | 117.8° | 145.5° |
C3' | C4' | H4'1 | H4'2 | 118.7° | 123.3° |
C4' | C3' | C2' | H3'1 | 125.3° | 118.6° |
C4' | C3' | C2' | H3'2 | 125.2° | 118.7° |
C4' | C3' | H3'1 | H3'2 | 118.9° | 122.7° |
C4' | C3' | C2' | C1' | 22.3° | 23.7° |
C4' | C3' | C2' | H2' | 147.6° | 142.9° |
C4' | C3' | C2' | H2'' | 102.9° | 95.7° |
H4'1 | C4' | C3' | C2' | 144.9° | 156.3° |
H4'1 | C4' | C3' | H3'1 | 19.6° | 37.6° |
H4'1 | C4' | C3' | H3'2 | 89.9° | 85.0° |
H4'2 | C4' | C3' | C2' | 105.6° | 80.4° |
H4'2 | C4' | C3' | H3'1 | 129.1° | 160.9° |
H4'2 | C4' | C3' | H3'2 | 19.6° | 38.3° |
C2' | C3' | H3'1 | H3'2 | 118.9° | 122.6° |
C3' | C2' | C1' | H2' | 125.3° | 119.4° |
C3' | C2' | C1' | H2'' | 125.3° | 119.4° |
C3' | C2' | H2' | H2'' | 119.1° | 121.5° |
C3' | C2' | C1' | N1 | 143.8° | 119.4° |
C3' | C2' | C1' | H1' | 103.8° | 119.3° |
H3'1 | C3' | C2' | C1' | 102.9° | 94.9° |
H3'1 | C3' | C2' | H2' | 22.3° | 24.3° |
H3'1 | C3' | C2' | H2'' | 131.8° | 145.7° |
H3'2 | C3' | C2' | C1' | 147.6° | 142.4° |
H3'2 | C3' | C2' | H2' | 87.2° | 98.4° |
H3'2 | C3' | C2' | H2'' | 22.3° | 23.0° |
C1' | C2' | H2' | H2'' | 119.0° | 121.3° |
C2' | C1' | N1 | H1' | 117.6° | 121.3° |
C2' | C1' | N1 | C6 | 64.7° | 121.5° |
C2' | C1' | N1 | C2 | 117.6° | 58.3° |
H2' | C2' | C1' | N1 | 91.0° | 0.0° |
H2' | C2' | C1' | H1' | 21.4° | 121.3° |
H2'' | C2' | C1' | N1 | 18.5° | 121.3° |
H2'' | C2' | C1' | H1' | 130.9° | 0.1° |
C1' | N1 | C6 | C2 | 177.8° | 179.8° |
C1' | N1 | C6 | C5 | 176.9° | 180.0° |
C1' | N1 | C6 | H6 | 3.1° | 0.1° |
C1' | N1 | C2 | N3 | 176.9° | 179.7° |
C1' | N1 | C2 | O2 | 4.9° | 0.2° |
H1' | C1' | N1 | C6 | 177.7° | 0.2° |
H1' | C1' | N1 | C2 | 0.1° | 179.6° |
N1 | C6 | C5 | H6 | 180.0° | 179.9° |
N1 | C6 | C5 | C4 | 0.2° | 0.0° |
N1 | C6 | C5 | H5 | 179.8° | 180.0° |
C6 | N1 | C2 | N3 | 0.9° | 0.5° |
C6 | N1 | C2 | O2 | 177.4° | 180.0° |
C2 | N1 | C6 | C5 | 0.9° | 0.2° |
C2 | N1 | C6 | H6 | 179.1° | 179.9° |
N1 | C2 | N3 | C4 | 0.3° | 0.5° |
N1 | C2 | N3 | O2 | 178.2° | 179.5° |
N1 | C2 | N3 | H3 | 179.7° | 179.8° |
C6 | C5 | C4 | H5 | 180.0° | 180.0° |
C6 | C5 | C4 | O4 | 179.9° | 179.9° |
C6 | C5 | C4 | N3 | 0.4° | 0.0° |
H6 | C6 | C5 | C4 | 179.8° | 179.9° |
H6 | C6 | C5 | H5 | 0.2° | 0.1° |
C5 | C4 | O4 | N3 | 179.7° | 179.9° |
C5 | C4 | N3 | C2 | 0.4° | 0.2° |
C5 | C4 | N3 | H3 | 179.6° | 180.0° |
H5 | C5 | C4 | O4 | 0.1° | 0.1° |
H5 | C5 | C4 | N3 | 179.6° | 180.0° |
O4 | C4 | N3 | C2 | 179.9° | 179.7° |
O4 | C4 | N3 | H3 | 0.0° | 0.1° |
C4 | N3 | C2 | H3 | 179.9° | 179.8° |
C4 | N3 | C2 | O2 | 177.9° | 180.0° |
H3 | N3 | C2 | O2 | 2.1° | 0.2° |