DPP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.45Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | C | sing | 1.51Å | 1.51Å | |
| CA | CB | sing | 1.53Å | 1.55Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| C | O | doub | 1.21Å | 1.24Å | |
| C | OXT | sing | 1.34Å | 1.34Å | |
| CB | NG | sing | 1.47Å | 1.47Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CB | HB3 | sing | 1.09Å | 1.10Å | |
| NG | HG1 | sing | 1.01Å | 1.00Å | |
| NG | HG2 | sing | 1.01Å | 1.00Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| N | CA | C | 113.8° | 109.5° |
| N | CA | CB | 110.8° | 109.5° |
| N | CA | HA | 104.6° | 109.5° |
| H | N | H2 | 109.5° | 111.0° |
| C | CA | CB | 106.3° | 109.5° |
| C | CA | HA | 109.2° | 109.5° |
| CA | C | O | 118.0° | 120.0° |
| CA | C | OXT | 117.7° | 120.0° |
| CB | CA | HA | 112.3° | 109.5° |
| CA | CB | NG | 104.8° | 109.5° |
| CA | CB | HB2 | 111.1° | 109.5° |
| CA | CB | HB3 | 111.1° | 109.5° |
| O | C | OXT | 124.2° | 120.0° |
| C | OXT | HXT | 109.5° | 117.1° |
| NG | CB | HB2 | 111.1° | 109.5° |
| NG | CB | HB3 | 111.1° | 109.4° |
| CB | NG | HG1 | 109.5° | 111.0° |
| CB | NG | HG2 | 109.5° | 111.0° |
| HB2 | CB | HB3 | 107.8° | 109.5° |
| HG1 | NG | HG2 | 109.4° | 111.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 120.0° | 123.9° |
| N | CA | C | CB | 122.1° | 120.0° |
| N | CA | C | HA | 116.5° | 120.0° |
| N | CA | CB | HA | 116.6° | 120.0° |
| N | CA | C | O | 45.9° | 20.0° |
| N | CA | C | OXT | 131.5° | 160.0° |
| N | CA | CB | NG | 79.1° | 55.0° |
| N | CA | CB | HB2 | 40.9° | 65.0° |
| N | CA | CB | HB3 | 160.9° | 175.0° |
| H | N | CA | C | 180.0° | 63.9° |
| H | N | CA | CB | 60.4° | 176.1° |
| H | N | CA | HA | 60.9° | 56.1° |
| H2 | N | CA | C | 60.0° | 60.0° |
| H2 | N | CA | CB | 179.6° | 60.0° |
| H2 | N | CA | HA | 59.1° | 180.0° |
| C | CA | CB | HA | 119.4° | 120.0° |
| CA | C | O | OXT | 177.2° | 180.0° |
| C | CA | CB | NG | 156.8° | 175.0° |
| C | CA | CB | HB2 | 83.1° | 55.0° |
| C | CA | CB | HB3 | 36.9° | 65.0° |
| CA | C | OXT | HXT | 177.2° | 180.0° |
| CB | CA | C | O | 76.2° | 100.0° |
| CB | CA | C | OXT | 106.4° | 80.0° |
| CA | CB | NG | HB2 | 120.0° | 120.0° |
| CA | CB | NG | HB3 | 120.0° | 120.0° |
| CA | CB | HB2 | HB3 | 121.9° | 120.0° |
| CA | CB | NG | HG1 | 180.0° | 56.0° |
| CA | CB | NG | HG2 | 60.0° | 180.0° |
| HA | CA | C | O | 162.4° | 140.0° |
| HA | CA | C | OXT | 15.0° | 40.0° |
| HA | CA | CB | NG | 37.4° | 65.0° |
| HA | CA | CB | HB2 | 157.5° | 175.0° |
| HA | CA | CB | HB3 | 82.6° | 54.9° |
| O | C | OXT | HXT | 0.0° | 0.0° |
| NG | CB | HB2 | HB3 | 121.9° | 120.0° |
| CB | NG | HG1 | HG2 | 120.0° | 124.0° |
| HB2 | CB | NG | HG1 | 60.0° | 64.0° |
| HB2 | CB | NG | HG2 | 180.0° | 60.0° |
| HB3 | CB | NG | HG1 | 60.0° | 176.0° |
| HB3 | CB | NG | HG2 | 60.0° | 60.0° |
