DPN
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CA | sing | 1.47Å | 1.48Å | |
N | H | sing | 1.01Å | 1.00Å | |
N | H2 | sing | 1.01Å | 1.00Å | |
CA | C | sing | 1.51Å | 1.53Å | |
CA | CB | sing | 1.53Å | 1.52Å | |
CA | HA | sing | 1.09Å | 1.10Å | |
C | O | doub | 1.21Å | 1.24Å | |
C | OXT | sing | 1.34Å | 1.33Å | |
OXT | HXT | sing | 0.97Å | 0.95Å | |
CB | CG | sing | 1.51Å | 1.50Å | |
CB | HB2 | sing | 1.09Å | 1.10Å | |
CB | HB3 | sing | 1.09Å | 1.10Å | |
CG | CD1 | doub | 1.38Å | 1.39Å | Aromatic |
CG | CD2 | sing | 1.38Å | 1.39Å | Aromatic |
CD1 | CE1 | sing | 1.38Å | 1.39Å | Aromatic |
CD1 | HD1 | sing | 1.08Å | 1.08Å | |
CD2 | CE2 | doub | 1.38Å | 1.39Å | Aromatic |
CD2 | HD2 | sing | 1.08Å | 1.08Å | |
CE1 | CZ | doub | 1.38Å | 1.39Å | Aromatic |
CE1 | HE1 | sing | 1.08Å | 1.08Å | |
CE2 | CZ | sing | 1.38Å | 1.39Å | Aromatic |
CE2 | HE2 | sing | 1.08Å | 1.08Å | |
CZ | HZ | sing | 1.08Å | 1.08Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CA | N | H | 109.5° | 111.0° |
CA | N | H2 | 109.5° | 111.0° |
N | CA | C | 111.0° | 109.5° |
N | CA | CB | 109.4° | 109.5° |
N | CA | HA | 109.1° | 109.5° |
H | N | H2 | 109.5° | 111.0° |
C | CA | CB | 110.3° | 109.5° |
C | CA | HA | 108.4° | 109.5° |
CA | C | O | 120.7° | 120.0° |
CA | C | OXT | 115.8° | 120.1° |
CB | CA | HA | 108.6° | 109.4° |
CA | CB | CG | 113.8° | 109.4° |
CA | CB | HB2 | 108.4° | 109.5° |
CA | CB | HB3 | 108.4° | 109.4° |
O | C | OXT | 123.5° | 119.9° |
C | OXT | HXT | 109.5° | 117.1° |
CG | CB | HB2 | 108.4° | 109.5° |
CG | CB | HB3 | 108.4° | 109.5° |
CB | CG | CD1 | 120.4° | 120.0° |
CB | CG | CD2 | 120.7° | 120.0° |
HB2 | CB | HB3 | 109.5° | 109.5° |
CD1 | CG | CD2 | 118.9° | 120.0° |
CG | CD1 | CE1 | 120.7° | 120.0° |
CG | CD1 | HD1 | 119.6° | 120.0° |
CG | CD2 | CE2 | 121.0° | 120.0° |
CG | CD2 | HD2 | 119.5° | 120.0° |
CE1 | CD1 | HD1 | 119.6° | 120.0° |
CD1 | CE1 | CZ | 119.7° | 120.0° |
CD1 | CE1 | HE1 | 120.1° | 120.0° |
CE2 | CD2 | HD2 | 119.5° | 120.0° |
CD2 | CE2 | CZ | 119.5° | 120.0° |
CD2 | CE2 | HE2 | 120.2° | 120.0° |
CZ | CE1 | HE1 | 120.1° | 120.0° |
CE1 | CZ | CE2 | 120.1° | 120.0° |
CE1 | CZ | HZ | 120.0° | 120.0° |
CZ | CE2 | HE2 | 120.2° | 120.0° |
CE2 | CZ | HZ | 119.9° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CA | N | H | H2 | 120.0° | 123.9° |
N | CA | C | CB | 121.4° | 120.0° |
N | CA | C | HA | 119.8° | 120.0° |
N | CA | CB | HA | 118.9° | 120.0° |
N | CA | C | O | 10.4° | 20.0° |
N | CA | C | OXT | 169.8° | 160.0° |
N | CA | CB | CG | 53.3° | 65.0° |
N | CA | CB | HB2 | 67.3° | 174.9° |
N | CA | CB | HB3 | 174.0° | 55.0° |
H | N | CA | C | 180.0° | 60.0° |
H | N | CA | CB | 58.0° | 60.0° |
H | N | CA | HA | 60.6° | 180.0° |
H2 | N | CA | C | 60.0° | 63.9° |
H2 | N | CA | CB | 62.0° | 176.1° |
H2 | N | CA | HA | 179.4° | 56.1° |
C | CA | CB | HA | 118.7° | 119.9° |
CA | C | O | OXT | 179.8° | 180.0° |
CA | C | OXT | HXT | 179.9° | 180.0° |
C | CA | CB | CG | 69.0° | 175.0° |
C | CA | CB | HB2 | 170.3° | 54.9° |
C | CA | CB | HB3 | 51.6° | 65.0° |
CB | CA | C | O | 111.0° | 100.0° |
CB | CA | C | OXT | 68.8° | 80.0° |
CA | CB | CG | HB2 | 120.6° | 120.0° |
CA | CB | CG | HB3 | 120.6° | 119.9° |
CA | CB | HB2 | HB3 | 118.0° | 119.9° |
CA | CB | CG | CD1 | 95.8° | 90.0° |
CA | CB | CG | CD2 | 85.1° | 90.2° |
HA | CA | C | O | 130.2° | 140.1° |
HA | CA | C | OXT | 49.9° | 40.0° |
HA | CA | CB | CG | 172.3° | 55.0° |
HA | CA | CB | HB2 | 51.7° | 65.0° |
HA | CA | CB | HB3 | 67.1° | 175.0° |
O | C | OXT | HXT | 0.0° | 0.0° |
CG | CB | HB2 | HB3 | 118.1° | 120.0° |
CB | CG | CD1 | CD2 | 179.1° | 179.7° |
CB | CG | CD1 | CE1 | 179.1° | 180.0° |
CB | CG | CD1 | HD1 | 1.0° | 0.0° |
CB | CG | CD2 | CE2 | 179.1° | 179.9° |
CB | CG | CD2 | HD2 | 0.9° | 0.1° |
HB2 | CB | CG | CD1 | 24.8° | 30.0° |
HB2 | CB | CG | CD2 | 154.3° | 149.7° |
HB3 | CB | CG | CD1 | 143.6° | 150.0° |
HB3 | CB | CG | CD2 | 35.5° | 29.7° |
CG | CD1 | CE1 | HD1 | 180.0° | 180.0° |
CD1 | CG | CD2 | CE2 | 0.0° | 0.2° |
CD1 | CG | CD2 | HD2 | 179.9° | 179.7° |
CG | CD1 | CE1 | CZ | 0.0° | 0.0° |
CG | CD1 | CE1 | HE1 | 180.0° | 179.9° |
CD2 | CG | CD1 | CE1 | 0.1° | 0.3° |
CD2 | CG | CD1 | HD1 | 179.9° | 179.8° |
CG | CD2 | CE2 | HD2 | 180.0° | 179.9° |
CG | CD2 | CE2 | CZ | 0.1° | 0.1° |
CG | CD2 | CE2 | HE2 | 179.9° | 180.0° |
CD1 | CE1 | CZ | HE1 | 180.0° | 180.0° |
CD1 | CE1 | CZ | CE2 | 0.1° | 0.2° |
CD1 | CE1 | CZ | HZ | 179.9° | 180.0° |
HD1 | CD1 | CE1 | CZ | 180.0° | 180.0° |
HD1 | CD1 | CE1 | HE1 | 0.0° | 0.0° |
CD2 | CE2 | CZ | CE1 | 0.1° | 0.3° |
CD2 | CE2 | CZ | HE2 | 180.0° | 180.0° |
CD2 | CE2 | CZ | HZ | 179.8° | 180.0° |
HD2 | CD2 | CE2 | CZ | 179.9° | 179.9° |
HD2 | CD2 | CE2 | HE2 | 0.1° | 0.1° |
CE1 | CZ | CE2 | HZ | 180.0° | 179.7° |
CE1 | CZ | CE2 | HE2 | 179.9° | 179.7° |
HE1 | CE1 | CZ | CE2 | 179.9° | 179.8° |
HE1 | CE1 | CZ | HZ | 0.2° | 0.0° |
HE2 | CE2 | CZ | HZ | 0.2° | 0.0° |