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DPD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C11C12doub1.38Å1.41ÅAromatic
C11C16sing1.38Å1.41ÅAromatic
C11C1sing1.51Å1.54Å
C12C13sing1.38Å1.41ÅAromatic
C12H12sing1.08Å1.10Å
C13C14doub1.38Å1.40ÅAromatic
C13H13sing1.08Å1.10Å
C14C15sing1.38Å1.40ÅAromatic
C14H14sing1.08Å1.10Å
C15C16doub1.38Å1.40ÅAromatic
C15H15sing1.08Å1.10Å
C16H16sing1.08Å1.10Å
C21C22doub1.38Å1.41ÅAromatic
C21C26sing1.38Å1.41ÅAromatic
C21C1sing1.51Å1.53Å
C22C23sing1.38Å1.40ÅAromatic
C22H22sing1.08Å1.10Å
C23C24doub1.38Å1.40ÅAromatic
C23H23sing1.08Å1.10Å
C24C25sing1.38Å1.40ÅAromatic
C24H24sing1.08Å1.10Å
C25C26doub1.38Å1.40ÅAromatic
C25H25sing1.08Å1.10Å
C26H26sing1.08Å1.10Å
C1C2sing1.53Å1.55Å
C1H1sing1.09Å1.12Å
C2C3sing1.53Å1.54Å
C2H22Asing1.09Å1.11Å
C2H21sing1.09Å1.11Å
C3N4sing1.47Å1.49Å
C3H32Asing1.09Å1.12Å
C3H31sing1.09Å1.12Å
N4C5sing1.47Å1.48Å
N4H4sing1.01Å1.02Å
C5C6sing1.53Å1.54Å
C5H52sing1.09Å1.11Å
C5H51sing1.09Å1.11Å
C6C7sing1.53Å1.54Å
C6H62sing1.09Å1.11Å
C6H61sing1.09Å1.11Å
C7N8sing1.47Å1.49Å
C7H72sing1.09Å1.11Å
C7H71sing1.09Å1.11Å
N8C9sing1.47Å1.49Å
N8H8sing1.01Å1.02Å
C9C19sing1.53Å1.55Å
C9C31sing1.51Å1.53Å
C9H9sing1.09Å1.11Å
C19H193sing1.09Å1.11Å
C19H192sing1.09Å1.11Å
C19H191sing1.09Å1.11Å
C31C32doub1.38Å1.42ÅAromatic
C31C36sing1.38Å1.41ÅAromatic
C32C33sing1.39Å1.41ÅAromatic
C32H32sing1.08Å1.10Å
C33C34doub1.39Å1.43ÅAromatic
C33O3sing1.36Å1.38Å
C34C35sing1.39Å1.42ÅAromatic
C34O4sing1.36Å1.38Å
C35C36doub1.38Å1.40ÅAromatic
C35H35sing1.08Å1.10Å
C36H36sing1.08Å1.10Å
O3C41sing1.43Å1.43Å
C41C42sing1.53Å1.53Å
C41H412sing1.09Å1.12Å
C41H411sing1.09Å1.11Å
C42C43sing1.53Å1.53Å
C42H422sing1.09Å1.12Å
C42H421sing1.09Å1.12Å
C43C44sing1.53Å1.53Å
C43H432sing1.09Å1.11Å
C43H431sing1.09Å1.11Å
C44H443sing1.09Å1.12Å
C44H442sing1.09Å1.11Å
C44H441sing1.09Å1.12Å
O4C51sing1.43Å1.42Å
C51C52sing1.53Å1.53Å
C51H512sing1.09Å1.12Å
C51H511sing1.09Å1.11Å
C52C53sing1.53Å1.54Å
C52H522sing1.09Å1.12Å
C52H521sing1.09Å1.11Å
C53C54sing1.53Å1.53Å
C53H532sing1.09Å1.12Å
C53H531sing1.09Å1.11Å
C54H543sing1.09Å1.11Å
C54H542sing1.09Å1.11Å
C54H541sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C12C11C16117.8°119.9°
C12C11C1121.4°120.0°
C11C12C13121.2°120.0°
C11C12H12119.7°119.9°
C16C11C1120.8°120.0°
C11C16C15121.1°120.0°
C11C16H16119.6°120.0°
C11C1C21110.0°109.5°
C11C1C2111.3°109.5°
C11C1H1109.3°109.4°
C13C12H12119.1°120.0°
C12C13C14120.0°120.0°
C12C13H13120.3°120.0°
C14C13H13119.8°120.0°
C13C14C15119.6°120.0°
C13C14H14120.1°120.0°
C15C14H14120.3°120.0°
C14C15C16120.2°120.0°
C14C15H15119.8°120.0°
C16C15H15120.0°120.0°
C15C16H16119.3°120.0°
C22C21C26118.2°120.0°
C22C21C1121.2°120.0°
C21C22C23120.9°120.0°
C21C22H22119.8°120.0°
C26C21C1120.6°120.0°
C21C26C25121.0°120.0°
C21C26H26119.8°120.0°
C21C1C2113.3°109.5°
C21C1H1107.1°109.5°
C23C22H22119.3°120.0°
C22C23C24120.2°120.0°
C22C23H23120.0°120.0°
C24C23H23119.9°120.0°
C23C24C25119.7°120.0°
C23C24H24120.3°120.0°
C25C24H24120.0°120.0°
C24C25C26120.0°120.0°
C24C25H25119.8°120.0°
C26C25H25120.1°120.0°
C25C26H26119.2°120.0°
C2C1H1105.7°109.5°
C1C2C3116.5°109.5°
C1C2H22A109.6°109.5°
C1C2H21109.6°109.5°
C3C2H22A109.7°109.4°
C3C2H21109.7°109.5°
C2C3N4115.6°109.5°
C2C3H32A110.0°109.4°
C2C3H31110.0°109.5°
H22AC2H21100.5°109.5°
N4C3H32A110.0°109.5°
N4C3H31110.0°109.5°
C3N4C5117.3°106.8°
C3N4H4109.3°106.7°
H32AC3H31100.2°109.5°
C5N4H4109.4°106.7°
N4C5C6114.2°109.6°
N4C5H52110.5°109.4°
N4C5H51110.4°109.5°
C6C5H52110.5°109.5°
C6C5H51110.5°109.5°
C5C6C7113.9°109.5°
C5C6H62110.5°109.4°
C5C6H61110.5°109.4°
H52C5H5199.8°109.4°
C7C6H62110.6°109.5°
C7C6H61110.6°109.6°
C6C7N8114.5°109.5°
C6C7H72110.3°109.4°
C6C7H71110.3°109.5°
H62C6H6199.7°109.4°
N8C7H72110.3°109.4°
N8C7H71110.4°109.5°
C7N8C9118.2°106.8°
C7N8H8109.1°106.7°
H72C7H71100.0°109.5°
C9N8H8109.0°106.7°
N8C9C19112.7°109.5°
N8C9C31110.8°109.5°
N8C9H9107.0°109.5°
C19C9C31111.6°109.5°
C19C9H9106.2°109.4°
C9C19H193112.7°109.5°
C9C19H192111.0°109.5°
C9C19H191111.0°109.5°
C31C9H9108.2°109.5°
C9C31C32121.2°119.9°
C9C31C36121.2°119.9°
H193C19H192111.0°109.5°
H193C19H191111.1°109.5°
H192C19H19199.3°109.5°
C32C31C36117.6°120.1°
C31C32C33122.2°120.0°
C31C32H32119.1°120.0°
C31C36C35120.8°120.2°
C31C36H36120.1°119.9°
C33C32H32118.6°120.0°
C32C33C34120.0°119.8°
C32C33O3114.8°120.1°
C34C33O3125.2°120.1°
C33C34C35117.3°119.9°
C33C34O4122.5°120.1°
C33O3C41121.2°106.8°
C35C34O4120.3°120.1°
C34C35C36122.1°120.0°
C34C35H35119.5°120.0°
C34O4C51121.3°106.8°
C36C35H35118.4°120.0°
C35C36H36119.1°119.9°
O3C41C42111.5°109.5°
O3C41H412111.5°109.5°
O3C41H411111.5°109.5°
C42C41H412111.4°109.4°
C42C41H411111.4°109.5°
C41C42C43113.2°109.5°
C41C42H422110.8°109.4°
C41C42H421110.9°109.5°
H412C41H41198.9°109.5°
C43C42H422110.9°109.5°
C43C42H421110.9°109.5°
C42C43C44113.4°109.5°
C42C43H432110.8°109.5°
C42C43H431110.8°109.5°
H422C42H42199.4°109.4°
C44C43H432110.8°109.5°
C44C43H431110.8°109.4°
C43C44H443113.4°109.5°
C43C44H442110.8°109.5°
C43C44H441110.8°109.5°
H432C43H43199.6°109.5°
H443C44H442110.8°109.5°
H443C44H441110.8°109.4°
H442C44H44199.5°109.5°
O4C51C52110.7°109.5°
O4C51H512111.8°109.5°
O4C51H511111.8°109.4°
C52C51H512111.7°109.5°
C52C51H511111.7°109.5°
C51C52C53113.8°109.5°
C51C52H522110.7°109.5°
C51C52H521110.6°109.5°
H512C51H51198.7°109.5°
C53C52H522110.6°109.5°
C53C52H521110.6°109.5°
C52C53C54113.6°109.5°
C52C53H532110.7°109.5°
C52C53H531110.7°109.5°
H522C52H52199.7°109.4°
C54C53H532110.7°109.5°
C54C53H531110.6°109.5°
C53C54H543113.6°109.5°
C53C54H542110.7°109.4°
C53C54H541110.7°109.5°
H532C53H53199.6°109.5°
H543C54H542110.7°109.5°
H543C54H541110.6°109.5°
H542C54H54199.6°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C12C11C16C1179.8°179.8°
C11C12C13H12179.9°180.0°
C11C12C13C140.0°0.0°
C11C12C13H13180.0°179.9°
C12C11C16C150.0°0.4°
C12C11C16H16180.0°180.0°
C12C11C1C2124.9°67.9°
C12C11C1C2101.5°52.1°
C12C11C1H1142.1°172.1°
C16C11C12C130.0°0.2°
C16C11C12H12179.9°179.8°
C11C16C15C140.0°0.4°
C11C16C15H16180.0°179.6°
C11C16C15H15180.0°179.7°
C16C11C1C21154.9°111.9°
C16C11C1C278.7°128.1°
C16C11C1H137.7°8.1°
C1C11C12C13179.8°180.0°
C1C11C12H120.1°0.0°
C1C11C16C15179.8°179.8°
C1C11C16H160.1°0.2°
C11C1C21C2293.0°112.1°
C11C1C21C2686.8°67.7°
C11C1C21C2125.2°120.0°
C11C1C21H1118.6°120.0°
C11C1C2H1118.5°120.0°
C11C1C2C3177.3°180.0°
C11C1C2H22A57.5°60.0°
C11C1C2H2152.0°60.0°
C12C13C14H13179.9°179.9°
C12C13C14C150.0°0.0°
C12C13C14H14179.9°179.9°
H12C12C13C14179.9°180.0°
H12C12C13H130.0°0.1°
C13C14C15H14180.0°179.9°
C13C14C15C160.0°0.2°
C13C14C15H15180.0°180.0°
H13C13C14C15180.0°180.0°
H13C13C14H140.0°0.0°
C14C15C16H15179.9°179.9°
C14C15C16H16179.9°180.0°
H14C14C15C16179.9°179.9°
H14C14C15H150.0°0.0°
H15C15C16H160.0°0.1°
C22C21C26C1179.8°179.7°
C21C22C23H22180.0°179.9°
C21C22C23C240.0°0.1°
C21C22C23H23180.0°179.9°
C22C21C26C250.0°0.5°
C22C21C26H26180.0°179.9°
C22C21C1C232.3°127.9°
C22C21C1H1148.4°7.9°
C26C21C22C230.0°0.3°
C26C21C22H22180.0°179.8°
C21C26C25C240.0°0.4°
C21C26C25H26180.0°179.6°
C21C26C25H25180.0°179.8°
C26C21C1C2148.0°52.3°
C26C21C1H131.8°172.4°
C1C21C22C23179.8°180.0°
C1C21C22H220.2°0.0°
C1C21C26C25179.8°179.8°
C1C21C26H260.2°0.2°
C21C1C2H1116.9°120.0°
C21C1C2C358.2°60.0°
C21C1C2H22A67.1°180.0°
C21C1C2H21176.5°60.0°
C22C23C24H23180.0°180.0°
C22C23C24C250.0°0.0°
C22C23C24H24180.0°180.0°
H22C22C23C24180.0°180.0°
H22C22C23H230.0°0.0°
C23C24C25H24180.0°180.0°
C23C24C25C260.0°0.2°
C23C24C25H25180.0°180.0°
H23C23C24C25180.0°180.0°
H23C23C24H240.0°0.0°
C24C25C26H25180.0°179.8°
C24C25C26H26180.0°180.0°
H24C24C25C26180.0°179.8°
H24C24C25H250.0°0.0°
H25C25C26H260.0°0.2°
C1C2C3H22A125.2°120.0°
C1C2C3H21125.2°120.0°
C1C2H22AH21115.4°120.0°
C1C2C3N4133.6°180.0°
C1C2C3H32A101.1°60.0°
C1C2C3H318.3°60.0°
H1C1C2C358.7°60.0°
H1C1C2H22A176.0°59.9°
H1C1C2H2166.5°179.9°
C3C2H22AH21115.5°119.9°
C2C3N4H32A125.3°120.0°
C2C3N4H31125.3°120.0°
C2C3H32AH31115.8°119.9°
C2C3N4C528.5°180.0°
C2C3N4H496.8°66.2°
H22AC2C3N48.3°60.0°
H22AC2C3H32A133.6°NaN°
H22AC2C3H31116.9°60.1°
H21C2C3N4101.2°59.9°
H21C2C3H32A24.1°60.1°
H21C2C3H31133.5°180.0°
N4C3H32AH31115.8°120.0°
C3N4C5H4125.2°113.8°
C3N4C5C6153.1°180.0°
C3N4C5H5281.6°60.0°
C3N4C5H5127.8°59.9°
H32AC3N4C596.8°60.1°
H32AC3N4H4138.0°173.8°
H31C3N4C5153.8°59.9°
H31C3N4H428.5°53.8°
N4C5C6H52125.3°120.0°
N4C5C6H51125.3°120.1°
N4C5H52H51116.3°120.0°
N4C5C6C7125.7°180.0°
N4C5C6H62109.0°60.0°
N4C5C6H610.5°59.9°
H4N4C5C681.7°66.2°
H4N4C5H5243.6°173.8°
H4N4C5H51153.0°53.8°
C6C5H52H51116.4°120.0°
C5C6C7H62125.2°120.0°
C5C6C7H61125.2°120.0°
C5C6H62H61116.4°119.9°
C5C6C7N861.7°180.0°
C5C6C7H7263.5°60.1°
C5C6C7H71173.0°60.0°
H52C5C6C70.5°60.0°
H52C5C6H62125.8°180.0°
H52C5C6H61124.8°60.1°
H51C5C6C7109.0°59.9°
H51C5C6H6216.3°60.1°
H51C5C6H61125.8°180.0°
C7C6H62H61116.5°120.1°
C6C7N8H72125.2°119.9°
C6C7N8H71125.2°120.0°
C6C7H72H71116.2°120.1°
C6C7N8C967.4°180.0°
C6C7N8H8167.3°66.2°
H62C6C7N8173.0°60.0°
H62C6C7H7261.8°179.9°
H62C6C7H7147.7°60.0°
H61C6C7N863.5°60.0°
H61C6C7H72171.3°59.9°
H61C6C7H7161.8°180.0°
N8C7H72H71116.2°120.0°
C7N8C9H8125.3°113.8°
C7N8C9C19126.2°90.0°
C7N8C9C31107.9°150.0°
C7N8C9H99.8°30.0°
H72C7N8C9167.4°60.0°
H72C7N8H842.1°173.8°
H71C7N8C957.9°60.0°
H71C7N8H867.4°53.8°
N8C9C19C31125.4°120.0°
N8C9C19H9116.9°120.0°
N8C9C31H9117.0°120.0°
N8C9C19H193180.0°60.0°
N8C9C19H19254.8°60.0°
N8C9C19H19154.7°180.0°
N8C9C31C3281.9°150.0°
N8C9C31C3698.3°30.0°
H8N8C9C190.8°23.8°
H8N8C9C31126.7°96.2°
H8N8C9H9115.5°143.8°
C19C9C31H9116.5°120.0°
C9C19H193H192125.2°120.0°
C9C19H193H191125.3°120.0°
C9C19H192H191116.9°120.0°
C19C9C31C3244.6°90.0°
C19C9C31C36135.2°90.0°
C31C9C19H19354.5°60.0°
C31C9C19H19270.7°180.0°
C31C9C19H191179.8°60.0°
C9C31C32C36179.8°180.0°
C9C31C32C33179.9°179.7°
C9C31C32H320.0°0.0°
C9C31C36C35180.0°180.0°
C9C31C36H360.0°0.0°
H9C9C19H19363.2°180.0°
H9C9C19H192171.6°60.0°
H9C9C19H19162.2°60.0°
H9C9C31C32161.1°30.0°
H9C9C31C3618.7°150.0°
H193C19H192H191117.0°120.0°
C31C32C33H32180.0°179.8°
C31C32C33C340.0°0.6°
C31C32C33O3180.0°179.9°
C32C31C36C350.2°0.0°
C32C31C36H36179.7°180.0°
C36C31C32C330.2°0.3°
C36C31C32H32179.8°180.0°
C31C36C35C340.2°0.1°
C31C36C35H36180.0°180.0°
C31C36C35H35179.8°180.0°
C32C33C34O3180.0°179.4°
C32C33C34C350.1°0.6°
C32C33C34O4180.0°179.7°
C32C33O3C41139.6°0.0°
H32C32C33C34180.0°179.7°
H32C32C33O30.0°0.3°
C33C34C35O4180.0°179.7°
C33C34C35C360.0°0.4°
C33C34C35H35180.0°179.7°
C34C33O3C4140.4°179.4°
C33C34O4C51150.5°179.7°
O3C33C34C35179.9°180.0°
O3C33C34O40.1°0.3°
C33O3C41C42135.5°180.0°
C33O3C41H41299.3°60.0°
C33O3C41H41110.3°60.0°
C34C35C36H35180.0°179.9°
C34C35C36H36179.8°179.9°
C35C34O4C5129.5°0.0°
O4C34C35C36180.0°180.0°
O4C34C35H350.1°0.1°
C34O4C51C52172.2°180.0°
C34O4C51H51262.6°60.0°
C34O4C51H51147.0°60.0°
H35C35C36H360.2°0.1°
O3C41C42H412125.3°120.0°
O3C41C42H411125.3°120.0°
O3C41H412H411117.4°120.0°
O3C41C42C4397.3°180.0°
O3C41C42H422137.4°60.0°
O3C41C42H42128.0°59.9°
C42C41H412H411117.3°120.0°
C41C42C43H422125.3°120.0°
C41C42C43H421125.3°120.0°
C41C42H422H421116.7°120.0°
C41C42C43C44172.5°179.9°
C41C42C43H43262.2°60.0°
C41C42C43H43147.3°60.0°
H412C41C42C4328.0°60.0°
H412C41C42H42297.3°180.0°
H412C41C42H421153.3°60.1°
H411C41C42C43137.5°60.0°
H411C41C42H42212.2°60.0°
H411C41C42H42197.2°179.9°
C43C42H422H421116.7°120.1°
C42C43C44H432125.2°120.0°
C42C43C44H431125.3°120.0°
C42C43H432H431116.7°120.0°
C42C43C44H443180.0°180.0°
C42C43C44H44254.7°60.0°
C42C43C44H44154.7°60.0°
H422C42C43C4447.2°60.0°
H422C42C43H432172.5°180.0°
H422C42C43H43178.0°60.0°
H421C42C43C4462.2°60.0°
H421C42C43H43263.0°60.0°
H421C42C43H431172.5°180.0°
C44C43H432H431116.6°120.0°
C43C44H443H442125.3°120.0°
C43C44H443H441125.3°120.0°
C43C44H442H441116.6°120.0°
H432C43C44H44354.7°59.9°
H432C43C44H442179.9°180.0°
H432C43C44H44170.5°60.0°
H431C43C44H44354.7°60.1°
H431C43C44H44270.6°60.0°
H431C43C44H441180.0°180.0°
H443C44H442H441116.6°120.0°
O4C51C52H512125.3°120.0°
O4C51C52H511125.3°120.0°
O4C51H512H511117.7°120.0°
O4C51C52C53159.0°180.0°
O4C51C52H52233.8°60.0°
O4C51C52H52175.8°60.0°
C52C51H512H511117.6°120.0°
C51C52C53H522125.3°120.0°
C51C52C53H521125.2°120.0°
C51C52H522H521116.5°120.0°
C51C52C53C54125.1°180.0°
C51C52C53H532109.7°60.0°
C51C52C53H5310.2°60.0°
H512C51C52C5375.8°60.0°
H512C51C52H522159.0°180.0°
H512C51C52H52149.5°60.1°
H511C51C52C5333.7°60.0°
H511C51C52H52291.5°60.0°
H511C51C52H521158.9°180.0°
C53C52H522H521116.5°120.0°
C52C53C54H532125.3°120.0°
C52C53C54H531125.3°120.0°
C52C53H532H531116.6°120.0°
C52C53C54H543179.9°180.0°
C52C53C54H54254.7°60.0°
C52C53C54H54154.8°60.0°
H522C52C53C540.2°60.0°
H522C52C53H532125.0°180.0°
H522C52C53H531125.4°60.0°
H521C52C53C54109.7°60.0°
H521C52C53H53215.5°60.1°
H521C52C53H531125.1°180.0°
C54C53H532H531116.5°120.0°
C53C54H543H542125.3°120.0°
C53C54H543H541125.2°120.1°
C53C54H542H541116.6°120.0°
H532C53C54H54354.7°59.9°
H532C53C54H542180.0°60.1°
H532C53C54H54170.5°180.0°
H531C53C54H54354.8°60.0°
H531C53C54H54270.5°180.0°
H531C53C54H541180.0°60.0°
H543C54H542H541116.5°120.0°

223790

PDB entries from 2024-08-14

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