DP1
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
NH2 | CZ | doub | 1.30Å | 1.30Å | |
NH2 | HH2 | sing | 0.97Å | 1.02Å | |
CZ | NH1 | sing | 1.37Å | 1.27Å | |
CZ | NE | sing | 1.37Å | 1.32Å | |
NH1 | NO | sing | 1.40Å | 1.37Å | |
NH1 | HH1 | sing | 0.97Å | 1.02Å | |
NO | O2 | sing | 1.22Å | 1.22Å | |
NO | O3 | doub | 1.22Å | 1.21Å | |
NE | CD | sing | 1.46Å | 1.49Å | |
NE | HNE | sing | 0.97Å | 1.02Å | |
CD | CG | sing | 1.53Å | 1.54Å | |
CD | HD1 | sing | 1.09Å | 1.11Å | |
CD | HD2 | sing | 1.09Å | 1.11Å | |
CG | CB | sing | 1.53Å | 1.54Å | |
CG | HG1 | sing | 1.09Å | 1.12Å | |
CG | HG2 | sing | 1.09Å | 1.12Å | |
CB | CA | sing | 1.53Å | 1.54Å | |
CB | HB1 | sing | 1.09Å | 1.12Å | |
CB | HB2 | sing | 1.09Å | 1.11Å | |
CA | N | sing | 1.47Å | 1.47Å | |
CA | C | sing | 1.51Å | 1.54Å | |
CA | HA | sing | 1.09Å | 1.11Å | |
N | HN1 | sing | 1.01Å | 1.02Å | |
N | HN2 | sing | 1.01Å | 1.02Å | |
C | O | doub | 1.21Å | 1.23Å | |
C | N' | sing | 1.35Å | 1.33Å | |
N' | CA' | sing | 1.46Å | 1.47Å | |
N' | HN' | sing | 0.97Å | 1.02Å | |
CA' | C' | sing | 1.51Å | 1.56Å | |
CA' | CB' | sing | 1.53Å | 1.55Å | |
CA' | HA' | sing | 1.09Å | 1.12Å | |
C' | O' | doub | 1.21Å | 1.25Å | |
C' | N1' | sing | 1.35Å | 1.34Å | |
N1' | H1'1 | sing | 0.97Å | 1.02Å | |
N1' | H1'2 | sing | 0.97Å | 1.02Å | |
CB' | C1 | sing | 1.53Å | 1.55Å | |
CB' | HB'1 | sing | 1.09Å | 1.11Å | |
CB' | HB'2 | sing | 1.09Å | 1.12Å | |
C1 | N1 | sing | 1.47Å | 1.47Å | |
C1 | H11 | sing | 1.09Å | 1.12Å | |
C1 | H12 | sing | 1.09Å | 1.11Å | |
N1 | HN11 | sing | 1.01Å | 1.02Å | |
N1 | HN12 | sing | 1.01Å | 1.02Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CZ | NH2 | HH2 | 112.6° | 120.0° |
NH2 | CZ | NH1 | 122.2° | 120.0° |
NH2 | CZ | NE | 117.6° | 120.0° |
NH1 | CZ | NE | 120.2° | 120.0° |
CZ | NH1 | NO | 127.0° | 120.0° |
CZ | NH1 | HH1 | 106.0° | 120.0° |
CZ | NE | CD | 125.0° | 120.0° |
CZ | NE | HNE | 106.8° | 120.0° |
NO | NH1 | HH1 | 106.1° | 120.0° |
NH1 | NO | O2 | 119.5° | 120.0° |
NH1 | NO | O3 | 120.6° | 120.0° |
O2 | NO | O3 | 119.8° | 120.0° |
CD | NE | HNE | 106.8° | 119.9° |
NE | CD | CG | 108.8° | 109.5° |
NE | CD | HD1 | 112.5° | 109.5° |
NE | CD | HD2 | 112.4° | 109.5° |
CG | CD | HD1 | 112.4° | 109.5° |
CG | CD | HD2 | 112.4° | 109.5° |
CD | CG | CB | 111.8° | 109.5° |
CD | CG | HG1 | 111.4° | 109.5° |
CD | CG | HG2 | 111.4° | 109.5° |
HD1 | CD | HD2 | 98.0° | 109.4° |
CB | CG | HG1 | 111.3° | 109.5° |
CB | CG | HG2 | 111.3° | 109.5° |
CG | CB | CA | 112.2° | 109.5° |
CG | CB | HB1 | 111.2° | 109.5° |
CG | CB | HB2 | 111.2° | 109.5° |
HG1 | CG | HG2 | 99.0° | 109.4° |
CA | CB | HB1 | 111.2° | 109.5° |
CA | CB | HB2 | 111.2° | 109.5° |
CB | CA | N | 108.3° | 109.5° |
CB | CA | C | 110.8° | 109.5° |
CB | CA | HA | 110.3° | 109.4° |
HB1 | CB | HB2 | 99.2° | 109.4° |
N | CA | C | 111.9° | 109.4° |
N | CA | HA | 109.1° | 109.5° |
CA | N | HN1 | 108.2° | 106.7° |
CA | N | HN2 | 112.6° | 106.7° |
C | CA | HA | 106.4° | 109.5° |
CA | C | O | 121.3° | 120.1° |
CA | C | N' | 116.4° | 120.0° |
HN1 | N | HN2 | 112.7° | 106.7° |
O | C | N' | 122.3° | 119.9° |
C | N' | CA' | 122.0° | 120.0° |
C | N' | HN' | 113.8° | 120.0° |
CA' | N' | HN' | 124.3° | 120.0° |
N' | CA' | C' | 111.4° | 109.5° |
N' | CA' | CB' | 107.1° | 109.5° |
N' | CA' | HA' | 111.6° | 109.5° |
C' | CA' | CB' | 114.2° | 109.4° |
C' | CA' | HA' | 104.0° | 109.5° |
CA' | C' | O' | 121.5° | 119.9° |
CA' | C' | N1' | 116.8° | 120.0° |
CB' | CA' | HA' | 108.6° | 109.4° |
CA' | CB' | C1 | 111.2° | 109.5° |
CA' | CB' | HB'1 | 111.6° | 109.5° |
CA' | CB' | HB'2 | 111.5° | 109.5° |
O' | C' | N1' | 121.7° | 120.1° |
C' | N1' | H1'1 | 121.7° | 120.1° |
C' | N1' | H1'2 | 116.7° | 120.0° |
H1'1 | N1' | H1'2 | 121.5° | 120.0° |
C1 | CB' | HB'1 | 111.6° | 109.5° |
C1 | CB' | HB'2 | 111.6° | 109.5° |
CB' | C1 | N1 | 110.7° | 109.5° |
CB' | C1 | H11 | 111.7° | 109.5° |
CB' | C1 | H12 | 111.8° | 109.5° |
HB'1 | CB' | HB'2 | 98.8° | 109.4° |
N1 | C1 | H11 | 111.8° | 109.5° |
N1 | C1 | H12 | 111.8° | 109.4° |
C1 | N1 | HN11 | 110.7° | 106.7° |
C1 | N1 | HN12 | 111.7° | 106.7° |
H11 | C1 | H12 | 98.6° | 109.5° |
HN11 | N1 | HN12 | 111.7° | 106.7° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
NH2 | CZ | NH1 | NE | 179.7° | 179.9° |
NH2 | CZ | NH1 | NO | 19.2° | 6.0° |
NH2 | CZ | NH1 | HH1 | 106.1° | 173.9° |
NH2 | CZ | NE | CD | 179.6° | 0.1° |
NH2 | CZ | NE | HNE | 54.3° | 179.9° |
HH2 | NH2 | CZ | NH1 | 107.8° | 6.7° |
HH2 | NH2 | CZ | NE | 72.5° | 173.4° |
CZ | NH1 | NO | HH1 | 125.3° | 179.9° |
CZ | NH1 | NO | O2 | 162.0° | 32.5° |
CZ | NH1 | NO | O3 | 19.2° | 147.4° |
NH1 | CZ | NE | CD | 0.2° | 180.0° |
NH1 | CZ | NE | HNE | 125.5° | 0.0° |
NE | CZ | NH1 | NO | 161.1° | 173.9° |
NE | CZ | NH1 | HH1 | 73.6° | 6.2° |
CZ | NE | CD | HNE | 125.3° | 180.0° |
CZ | NE | CD | CG | 105.9° | 180.0° |
CZ | NE | CD | HD1 | 128.9° | 60.0° |
CZ | NE | CD | HD2 | 19.3° | 60.0° |
NH1 | NO | O2 | O3 | 178.8° | 179.9° |
HH1 | NH1 | NO | O2 | 72.7° | 147.5° |
HH1 | NH1 | NO | O3 | 106.1° | 32.5° |
NE | CD | CG | HD1 | 125.3° | 120.0° |
NE | CD | CG | HD2 | 125.2° | 120.1° |
NE | CD | HD1 | HD2 | 118.4° | 120.0° |
NE | CD | CG | CB | 51.6° | 180.0° |
NE | CD | CG | HG1 | 176.9° | 60.0° |
NE | CD | CG | HG2 | 73.6° | 59.9° |
HNE | NE | CD | CG | 128.8° | 0.0° |
HNE | NE | CD | HD1 | 3.6° | 120.1° |
HNE | NE | CD | HD2 | 106.0° | 120.0° |
CG | CD | HD1 | HD2 | 118.4° | 120.0° |
CD | CG | CB | HG1 | 125.3° | 120.0° |
CD | CG | CB | HG2 | 125.3° | 120.0° |
CD | CG | HG1 | HG2 | 117.3° | 120.0° |
CD | CG | CB | CA | 69.7° | 180.0° |
CD | CG | CB | HB1 | 165.0° | 60.0° |
CD | CG | CB | HB2 | 55.6° | 60.0° |
HD1 | CD | CG | CB | 73.6° | 60.0° |
HD1 | CD | CG | HG1 | 51.6° | 180.0° |
HD1 | CD | CG | HG2 | 161.1° | 60.1° |
HD2 | CD | CG | CB | 176.9° | 59.9° |
HD2 | CD | CG | HG1 | 57.9° | 60.1° |
HD2 | CD | CG | HG2 | 51.6° | 180.0° |
CB | CG | HG1 | HG2 | 117.2° | 120.0° |
CG | CB | CA | HB1 | 125.2° | 120.0° |
CG | CB | CA | HB2 | 125.3° | 120.1° |
CG | CB | HB1 | HB2 | 117.1° | 120.0° |
CG | CB | CA | N | 149.2° | 65.0° |
CG | CB | CA | C | 87.7° | 175.0° |
CG | CB | CA | HA | 29.9° | 55.0° |
HG1 | CG | CB | CA | 55.6° | 60.0° |
HG1 | CG | CB | HB1 | 69.7° | 180.0° |
HG1 | CG | CB | HB2 | 179.1° | 60.1° |
HG2 | CG | CB | CA | 165.0° | 59.9° |
HG2 | CG | CB | HB1 | 39.8° | 60.1° |
HG2 | CG | CB | HB2 | 69.7° | 180.0° |
CA | CB | HB1 | HB2 | 117.1° | 120.0° |
CB | CA | N | C | 122.4° | 120.0° |
CB | CA | N | HA | 120.0° | 120.0° |
CB | CA | C | HA | 119.9° | 120.0° |
CB | CA | N | HN1 | 180.0° | 60.0° |
CB | CA | N | HN2 | 54.7° | 53.8° |
CB | CA | C | O | 88.5° | 100.0° |
CB | CA | C | N' | 91.1° | 80.0° |
HB1 | CB | CA | N | 85.6° | 55.0° |
HB1 | CB | CA | C | 37.5° | 65.0° |
HB1 | CB | CA | HA | 155.1° | 175.0° |
HB2 | CB | CA | N | 23.9° | 174.9° |
HB2 | CB | CA | C | 147.0° | 55.0° |
HB2 | CB | CA | HA | 95.4° | 65.0° |
N | CA | C | HA | 119.1° | 120.0° |
CA | N | HN1 | HN2 | 125.2° | 113.8° |
N | CA | C | O | 32.4° | 20.0° |
N | CA | C | N' | 147.9° | 160.0° |
C | CA | N | HN1 | 57.6° | 60.0° |
C | CA | N | HN2 | 177.2° | 173.8° |
CA | C | O | N' | 179.6° | 180.0° |
CA | C | N' | CA' | 179.9° | 180.0° |
CA | C | N' | HN' | 0.0° | 0.0° |
HA | CA | N | HN1 | 60.0° | 180.0° |
HA | CA | N | HN2 | 65.3° | 66.2° |
HA | CA | C | O | 151.5° | 140.0° |
HA | CA | C | N' | 28.8° | 40.0° |
O | C | N' | CA' | 0.3° | 0.0° |
O | C | N' | HN' | 179.7° | 180.0° |
C | N' | CA' | HN' | 180.0° | 180.0° |
C | N' | CA' | C' | 104.2° | 85.0° |
C | N' | CA' | CB' | 130.4° | 155.0° |
C | N' | CA' | HA' | 11.6° | 35.0° |
N' | CA' | C' | CB' | 121.4° | 120.0° |
N' | CA' | C' | HA' | 120.4° | 120.0° |
N' | CA' | CB' | HA' | 120.7° | 120.0° |
N' | CA' | C' | O' | 97.0° | 0.0° |
N' | CA' | C' | N1' | 82.3° | 180.0° |
N' | CA' | CB' | C1 | 69.4° | 65.0° |
N' | CA' | CB' | HB'1 | 55.9° | 175.0° |
N' | CA' | CB' | HB'2 | 165.4° | 55.0° |
HN' | N' | CA' | C' | 75.8° | 95.0° |
HN' | N' | CA' | CB' | 49.7° | 25.0° |
HN' | N' | CA' | HA' | 168.4° | 145.0° |
C' | CA' | CB' | HA' | 115.6° | 120.0° |
CA' | C' | O' | N1' | 179.3° | 180.0° |
CA' | C' | N1' | H1'1 | 0.7° | 0.1° |
CA' | C' | N1' | H1'2 | 180.0° | 180.0° |
C' | CA' | CB' | C1 | 166.8° | 175.0° |
C' | CA' | CB' | HB'1 | 67.9° | 54.9° |
C' | CA' | CB' | HB'2 | 41.6° | 65.0° |
CB' | CA' | C' | O' | 141.6° | 120.0° |
CB' | CA' | C' | N1' | 39.1° | 60.0° |
CA' | CB' | C1 | HB'1 | 125.3° | 120.0° |
CA' | CB' | C1 | HB'2 | 125.2° | 120.0° |
CA' | CB' | HB'1 | HB'2 | 117.4° | 120.0° |
CA' | CB' | C1 | N1 | 148.6° | 180.0° |
CA' | CB' | C1 | H11 | 23.4° | 60.0° |
CA' | CB' | C1 | H12 | 86.1° | 60.0° |
HA' | CA' | C' | O' | 23.3° | 120.0° |
HA' | CA' | C' | N1' | 157.3° | 59.9° |
HA' | CA' | CB' | C1 | 51.3° | 55.0° |
HA' | CA' | CB' | HB'1 | 176.6° | 65.0° |
HA' | CA' | CB' | HB'2 | 74.0° | 175.0° |
O' | C' | N1' | H1'1 | 180.0° | 180.0° |
O' | C' | N1' | H1'2 | 0.7° | 0.1° |
C' | N1' | H1'1 | H1'2 | 179.2° | 179.9° |
C1 | CB' | HB'1 | HB'2 | 117.5° | 120.0° |
CB' | C1 | N1 | H11 | 125.2° | 120.0° |
CB' | C1 | N1 | H12 | 125.3° | 120.0° |
CB' | C1 | H11 | H12 | 117.7° | 120.0° |
CB' | C1 | N1 | HN11 | 180.0° | 66.2° |
CB' | C1 | N1 | HN12 | 54.8° | 180.0° |
HB'1 | CB' | C1 | N1 | 86.1° | 60.0° |
HB'1 | CB' | C1 | H11 | 148.7° | 180.0° |
HB'1 | CB' | C1 | H12 | 39.2° | 60.0° |
HB'2 | CB' | C1 | N1 | 23.4° | 60.0° |
HB'2 | CB' | C1 | H11 | 101.8° | 60.0° |
HB'2 | CB' | C1 | H12 | 148.7° | 180.0° |
N1 | C1 | H11 | H12 | 117.7° | 120.0° |
C1 | N1 | HN11 | HN12 | 125.2° | 113.7° |
H11 | C1 | N1 | HN11 | 54.7° | 173.8° |
H11 | C1 | N1 | HN12 | 70.5° | 60.0° |
H12 | C1 | N1 | HN11 | 54.7° | 53.8° |
H12 | C1 | N1 | HN12 | 179.9° | 60.0° |