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Summary Geometry PCM/PTM Related PDB entries

DOZ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
ZN	N2	sing	2.03Å	1.97Å
ZN	O4	sing	1.95Å	1.91Å
N2	C6	sing	1.47Å	1.48Å
N2	C8	sing	1.47Å	1.48Å
O4	H4	sing	0.87Å	0.95Å
C6	H61	sing	0.96Å	1.10Å
C6	H62	sing	0.95Å	1.10Å
C6	H63	sing	0.95Å	1.10Å
C8	H81	sing	0.96Å	1.10Å
C8	H82	sing	0.95Å	1.10Å
C8	H83	sing	0.95Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N2	ZN	O4	106.3°	109.1°
ZN	N2	C6	109.8°	109.5°
ZN	N2	C8	109.3°	109.9°
ZN	O4	H4	109.5°	109.5°
C6	N2	C8	110.4°	122.2°
N2	C6	H61	109.5°	110.4°
N2	C6	H62	109.5°	109.2°
N2	C6	H63	109.4°	109.4°
N2	C8	H81	109.5°	110.3°
N2	C8	H82	109.5°	109.4°
N2	C8	H83	109.4°	109.3°
H61	C6	H62	109.5°	109.2°
H61	C6	H63	109.4°	109.3°
H62	C6	H63	109.5°	109.3°
H81	C8	H82	109.4°	109.2°
H81	C8	H83	109.5°	109.3°
H82	C8	H83	109.5°	109.3°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
ZN	N2	C6	C8	120.5°	130.6°
N2	ZN	O4	H4	160.3°	163.0°
ZN	N2	C6	H61	161.4°	120.1°
ZN	N2	C6	H62	78.6°	0.1°
ZN	N2	C6	H63	41.4°	119.6°
ZN	N2	C8	H81	97.2°	115.5°
ZN	N2	C8	H82	142.8°	124.3°
ZN	N2	C8	H83	22.8°	4.6°
O4	ZN	N2	C6	178.7°	39.5°
O4	ZN	N2	C8	57.5°	176.4°
N2	C6	H61	H62	120.0°	120.1°
N2	C6	H61	H63	120.0°	120.4°
N2	C6	H62	H63	120.0°	119.6°
C6	N2	C8	H81	23.5°	14.9°
C6	N2	C8	H82	96.5°	105.3°
C6	N2	C8	H83	143.6°	135.1°
C8	N2	C6	H61	78.1°	10.5°
C8	N2	C6	H62	41.9°	130.7°
C8	N2	C6	H63	161.9°	109.8°
N2	C8	H81	H82	120.0°	120.3°
N2	C8	H81	H83	120.0°	120.2°
N2	C8	H82	H83	120.0°	119.6°
H61	C6	H62	H63	120.0°	119.6°
H81	C8	H82	H83	120.0°	119.5°

259015

PDB entries from 2026-09-02

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