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DOT

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PGO1Gsing1.61Å1.48Å
PGO2Gdoub1.48Å1.46Å
PGO3Gsing1.61Å1.56Å
PGO3Bsing1.61Å1.78Å
O1GHOG1sing0.97Å0.95Å
O3GHOG3sing0.97Å0.95Å
PBO1Bdoub1.48Å1.42Å
PBO2Bsing1.61Å1.57Å
PBO3Bsing1.61Å1.66Å
PBO3Asing1.61Å1.73Å
O2BHOB2sing0.97Å0.95Å
PAO1Adoub1.48Å1.62Å
PAO2Asing1.61Å1.54Å
PAO3Asing1.61Å1.61Å
PAO5'sing1.61Å1.64Å
O2AHOA2sing0.97Å0.95Å
O5'C5Bsing1.43Å1.38Å
C5BC4Bsing1.53Å1.59Å
C5BH5'1sing1.09Å1.11Å
C5BH5'2sing1.09Å1.12Å
C4BO4'sing1.44Å1.47Å
C4BC3Bsing1.55Å1.63Å
C4BH4Bsing1.09Å1.12Å
O4'C1Bsing1.44Å1.38Å
C3BO3'sing1.45Å1.53Å
C3BC2Bsing1.55Å1.42Å
C3BH3Bsing1.09Å1.11Å
O3'C'sing1.35Å1.41Å
C2BC1Bsing1.54Å1.54Å
C2BH2'1sing1.09Å1.12Å
C2BH2'2sing1.09Å1.11Å
C1BN9sing1.47Å1.56Å
C1BH1'sing1.09Å1.11Å
N9C8sing1.36Å1.45ÅAromatic
N9C4sing1.37Å1.41ÅAromatic
C8N7doub1.30Å1.46ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.36Å1.38ÅAromatic
C5C6doub1.40Å1.46ÅAromatic
C5C4sing1.41Å1.49ÅAromatic
C6N6sing1.38Å1.36Å
C6N1sing1.33Å1.43ÅAromatic
N6HN61sing0.97Å1.02Å
N6HN62sing0.97Å1.02Å
N1C2doub1.32Å1.43ÅAromatic
C2N3sing1.32Å1.38ÅAromatic
C2H2sing1.08Å1.10Å
N3C4doub1.33Å1.37ÅAromatic
C'O1'doub1.22Å1.28Å
C'C1'sing1.47Å1.56Å
C1'C2'doub1.40Å1.70ÅAromatic
C1'C6'sing1.40Å1.50ÅAromatic
C2'N2'sing1.39Å1.36Å
C2'C3'sing1.39Å1.74ÅAromatic
N2'H2Bsing0.97Å1.02Å
N2'H2Dsing0.97Å1.02Å
C3'C4'doub1.38Å1.45ÅAromatic
C3'H3'sing1.08Å1.10Å
C4'C5'sing1.39Å1.49ÅAromatic
C4'H4'sing1.08Å1.10Å
C5'C6'doub1.38Å1.47ÅAromatic
C5'H5'sing1.08Å1.10Å
C6'H6'sing1.08Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1GPGO2G109.2°109.5°
O1GPGO3G111.3°109.5°
O1GPGO3B107.7°109.4°
PGO1GHOG1109.2°114.0°
O2GPGO3G108.8°109.5°
O2GPGO3B112.7°109.5°
O3GPGO3B107.2°109.5°
PGO3GHOG3111.3°114.0°
PGO3BPB126.3°134.0°
O1BPBO2B116.0°109.5°
O1BPBO3B108.6°109.4°
O1BPBO3A111.5°109.4°
O2BPBO3B111.1°109.5°
O2BPBO3A108.7°109.5°
PBO2BHOB2116.0°114.0°
O3BPBO3A99.7°109.5°
PBO3APA131.2°134.0°
O1APAO2A127.4°109.5°
O1APAO3A111.4°109.5°
O1APAO5'96.2°109.4°
O2APAO3A101.9°109.5°
O2APAO5'108.2°109.5°
PAO2AHOA2127.4°114.0°
O3APAO5'111.5°109.4°
PAO5'C5B116.1°123.0°
O5'C5BC4B109.2°109.5°
O5'C5BH5'1112.3°109.4°
O5'C5BH5'2112.3°109.5°
C4BC5BH5'1112.3°109.5°
C4BC5BH5'2112.3°109.5°
C5BC4BO4'103.3°110.6°
C5BC4BC3B120.1°110.6°
C5BC4BH4B105.3°110.6°
H5'1C5BH5'298.1°109.5°
O4'C4BC3B104.7°103.5°
O4'C4BH4B120.6°110.6°
C4BO4'C1B112.4°106.9°
C3BC4BH4B103.9°110.7°
C4BC3BO3'118.8°110.9°
C4BC3BC2B102.7°102.1°
C4BC3BH3B111.8°110.9°
O4'C1BC2B105.4°107.3°
O4'C1BN9107.3°109.9°
O4'C1BH1'120.4°109.9°
O3'C3BC2B118.4°110.9°
O3'C3BH3B92.9°110.8°
C3BO3'C'124.9°117.0°
C2BC3BH3B112.3°110.9°
C3BC2BC1B110.5°104.1°
C3BC2BH2'1111.9°110.5°
C3BC2BH2'2111.8°110.5°
O3'C'O1'106.7°120.0°
O3'C'C1'124.1°120.0°
C1BC2BH2'1111.8°110.5°
C1BC2BH2'2111.8°110.5°
C2BC1BN9124.3°109.9°
C2BC1BH1'101.4°109.9°
H2'1C2BH2'298.6°110.6°
N9C1BH1'99.2°110.0°
C1BN9C8134.8°126.2°
C1BN9C4123.6°126.2°
C8N9C4101.6°107.5°
N9C8N7116.8°109.9°
N9C8H8121.4°125.0°
N9C4C5108.7°106.0°
N9C4N3123.4°135.0°
N7C8H8121.8°125.0°
C8N7C5100.1°109.5°
N7C5C6128.2°134.7°
N7C5C4112.7°107.1°
C6C5C4118.6°118.2°
C5C6N6125.3°120.8°
C5C6N1113.5°118.5°
C5C4N3127.9°119.0°
N6C6N1104.2°120.7°
C6N6HN61106.6°120.0°
C6N6HN62125.3°120.0°
C6N1C2119.9°121.2°
HN61N6HN62106.6°120.0°
N1C2N3130.7°122.5°
N1C2H2116.7°118.8°
N3C2H2112.6°118.7°
C2N3C4108.6°120.6°
O1'C'C1'115.0°120.0°
C'C1'C2'105.0°120.2°
C'C1'C6'109.7°120.2°
C2'C1'C6'131.6°119.6°
C1'C2'N2'90.3°120.2°
C1'C2'C3'94.1°119.7°
C1'C6'C5'122.4°119.9°
C1'C6'H6'119.7°120.0°
N2'C2'C3'171.9°120.2°
C2'N2'H2B119.9°120.0°
C2'N2'H2D90.3°120.0°
C2'C3'C4'134.5°120.1°
C2'C3'H3'124.9°120.0°
H2BN2'H2D119.9°120.0°
C4'C3'H3'100.5°120.0°
C3'C4'C5'120.1°120.4°
C3'C4'H4'118.6°119.8°
C5'C4'H4'121.3°119.8°
C4'C5'C6'116.9°120.4°
C4'C5'H5'122.1°119.8°
C6'C5'H5'120.9°119.8°
C5'C6'H6'117.9°120.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1GPGO2GO3G121.6°120.0°
O1GPGO2GO3B119.7°120.0°
O1GPGO3GO3B117.6°120.0°
O1GPGO3GHOG3180.0°60.0°
O1GPGO3BPB78.6°80.0°
O2GPGO3GO3B122.1°120.0°
O2GPGO1GHOG1180.0°180.0°
O2GPGO3GHOG359.6°60.0°
O2GPGO3BPB160.9°40.0°
O3GPGO1GHOG159.9°59.9°
O3GPGO3BPB41.3°160.0°
O3BPGO1GHOG157.4°60.1°
O3BPGO3GHOG362.4°180.0°
PGO3BPBO1B119.1°40.0°
PGO3BPBO2B9.7°80.0°
PGO3BPBO3A124.2°160.0°
O1BPBO2BO3B124.7°120.0°
O1BPBO2BO3A126.5°120.0°
O1BPBO3BO3A116.8°120.0°
O1BPBO2BHOB2180.0°180.0°
O1BPBO3APA60.8°45.1°
O2BPBO3BO3A114.5°120.0°
O2BPBO3APA68.3°74.9°
O3BPBO2BHOB255.3°60.0°
O3BPBO3APA175.3°165.0°
O3APBO2BHOB253.4°60.0°
PBO3APAO1A43.6°40.1°
PBO3APAO2A177.8°80.0°
PBO3APAO5'62.6°160.0°
O1APAO2AO3A129.1°120.0°
O1APAO2AO5'113.3°120.0°
O1APAO3AO5'106.2°120.0°
O1APAO2AHOA2180.0°180.0°
O1APAO5'C5B172.6°55.0°
O2APAO3AO5'115.2°120.0°
O2APAO5'C5B54.6°65.0°
O3APAO2AHOA250.8°60.0°
O3APAO5'C5B56.6°175.0°
O5'PAO2AHOA266.8°60.0°
PAO5'C5BC4B158.2°180.0°
PAO5'C5BH5'176.6°60.0°
PAO5'C5BH5'232.9°60.0°
O5'C5BC4BH5'1125.3°120.0°
O5'C5BC4BH5'2125.3°120.0°
O5'C5BH5'1H5'2118.2°120.0°
O5'C5BC4BO4'14.4°66.5°
O5'C5BC4BC3B101.7°179.5°
O5'C5BC4BH4B141.7°56.4°
C4BC5BH5'1H5'2118.2°120.0°
C5BC4BO4'C3B126.6°118.5°
C5BC4BO4'H4B117.1°122.9°
C5BC4BC3BH4B117.3°123.0°
C5BC4BO4'C1B133.1°158.5°
C5BC4BC3BO3'119.1°86.3°
C5BC4BC3BC2B108.0°155.5°
C5BC4BC3BH3B12.6°37.3°
H5'1C5BC4BO4'110.9°53.5°
H5'1C5BC4BC3B133.0°60.6°
H5'1C5BC4BH4B16.4°176.4°
H5'2C5BC4BO4'139.6°173.5°
H5'2C5BC4BC3B23.6°59.5°
H5'2C5BC4BH4B93.0°63.6°
O4'C4BC3BH4B127.4°118.6°
O4'C4BC3BO3'125.6°155.3°
O4'C4BC3BC2B7.3°37.0°
O4'C4BC3BH3B127.9°81.2°
C4BO4'C1BC2B16.8°26.5°
C4BO4'C1BN9151.1°146.0°
C4BO4'C1BH1'96.7°92.9°
C3BC4BO4'C1B6.5°40.1°
C4BC3BO3'C2B125.7°112.7°
C4BC3BO3'H3B117.0°123.6°
C4BC3BC2BH3B120.3°118.2°
C4BC3BO3'C'101.1°150.0°
C4BC3BC2BC1B17.4°20.9°
C4BC3BC2BH2'1142.7°139.5°
C4BC3BC2BH2'2107.8°97.8°
H4BC4BO4'C1B109.8°78.6°
H4BC4BC3BO3'1.8°36.7°
H4BC4BC3BC2B134.7°81.5°
H4BC4BC3BH3B104.7°160.3°
O4'C1BC2BC3B22.3°2.0°
O4'C1BC2BN9124.2°119.4°
O4'C1BC2BH1'126.2°119.4°
O4'C1BC2BH2'1147.6°116.6°
O4'C1BC2BH2'2103.0°120.7°
O4'C1BN9H1'126.0°121.1°
O4'C1BN9C85.3°23.6°
O4'C1BN9C4176.4°156.7°
O3'C3BC2BH3B106.6°123.6°
O3'C3BC2BC1B115.7°139.1°
O3'C3BC2BH2'19.5°102.3°
O3'C3BC2BH2'2119.0°20.4°
C3BO3'C'O1'92.0°0.0°
C3BO3'C'C1'130.6°180.0°
C2BC3BO3'C'133.3°97.3°
C3BC2BC1BH2'1125.3°118.6°
C3BC2BC1BH2'2125.3°118.7°
C3BC2BH2'1H2'2117.8°122.7°
C3BC2BC1BN9146.5°121.5°
C3BC2BC1BH1'103.9°117.4°
H3BC3BO3'C'15.9°26.4°
H3BC3BC2BC1B137.7°97.3°
H3BC3BC2BH2'197.0°21.3°
H3BC3BC2BH2'212.5°144.0°
O3'C'O1'C1'141.8°180.0°
O3'C'C1'C2'179.8°174.4°
O3'C'C1'C6'34.5°5.9°
C1BC2BH2'1H2'2117.7°122.6°
C2BC1BN9H1'110.7°121.1°
C2BC1BN9C8128.6°94.3°
C2BC1BN9C453.1°85.4°
H2'1C2BC1BN988.2°2.8°
H2'1C2BC1BH1'21.4°124.0°
H2'2C2BC1BN921.3°119.9°
H2'2C2BC1BH1'130.9°1.3°
C1BN9C8C4178.6°179.7°
C1BN9C8N7178.5°180.0°
C1BN9C8H81.5°0.1°
C1BN9C4C5177.9°179.9°
C1BN9C4N31.6°0.8°
H1'C1BN9C8120.7°144.7°
H1'C1BN9C457.6°35.7°
N9C8N7H8180.0°179.9°
N9C8N7C50.8°0.0°
C8N9C4C50.9°0.4°
C8N9C4N3179.6°179.5°
C4N9C8N70.0°0.3°
C4N9C8H8179.9°179.8°
N9C4C5N71.5°0.4°
N9C4C5C6171.4°179.8°
N9C4C5N3179.5°179.3°
N9C4N3C2178.0°179.6°
C8N7C5C6170.7°180.0°
C8N7C5C41.4°0.2°
H8C8N7C5179.2°180.0°
N7C5C6C4171.7°179.8°
N7C5C6N651.7°0.0°
N7C5C6N1178.8°180.0°
N7C5C4N3179.0°179.7°
C5C6N6N1133.1°180.0°
C5C6N6HN6154.8°0.0°
C5C6N6HN62180.0°180.0°
C5C6N1C25.8°0.0°
C6C5C4N38.1°0.5°
C4C5C6N6120.0°179.7°
C4C5C6N19.5°0.2°
C5C4N3C21.4°0.6°
C6N6HN61HN62135.9°180.0°
N6C6N1C2133.7°180.0°
N1C6N6HN61172.1°180.0°
N1C6N6HN6246.9°0.0°
C6N1C2N30.9°0.1°
C6N1C2H2179.1°180.0°
N1C2N3H2180.0°179.9°
N1C2N3C43.3°0.4°
H2C2N3C4176.7°179.7°
O1'C'C1'C2'45.5°5.6°
O1'C'C1'C6'168.8°174.2°
C'C1'C2'C6'134.8°179.8°
C'C1'C2'N2'43.5°0.0°
C'C1'C2'C3'129.6°180.0°
C'C1'C6'C5'125.6°179.7°
C'C1'C6'H6'54.4°0.0°
C1'C2'N2'C3'122.5°180.0°
C1'C2'N2'H2B54.7°5.7°
C1'C2'N2'H2D180.0°174.4°
C1'C2'C3'C4'0.5°0.0°
C1'C2'C3'H3'179.5°180.0°
C2'C1'C6'C5'7.6°0.5°
C2'C1'C6'H6'172.4°179.7°
C6'C1'C2'N2'178.3°179.8°
C6'C1'C2'C3'5.1°0.3°
C1'C6'C5'C4'4.0°0.5°
C1'C6'C5'H6'180.0°179.8°
C1'C6'C5'H5'176.0°179.7°
C2'N2'H2BH2D109.7°180.0°
N2'C2'C3'C4'122.8°180.0°
N2'C2'C3'H3'57.2°0.0°
C3'C2'N2'H2B67.8°174.4°
C3'C2'N2'H2D57.5°5.6°
C2'C3'C4'H3'180.0°180.0°
C2'C3'C4'C5'1.8°0.0°
C2'C3'C4'H4'178.1°180.0°
C3'C4'C5'H4'180.0°180.0°
C3'C4'C5'C6'0.2°0.3°
C3'C4'C5'H5'179.9°180.0°
H3'C3'C4'C5'178.2°180.0°
H3'C3'C4'H4'1.9°0.0°
C4'C5'C6'H5'180.0°179.8°
C4'C5'C6'H6'176.0°179.7°
H4'C4'C5'C6'179.8°179.7°
H4'C4'C5'H5'0.1°0.0°
H5'C5'C6'H6'4.0°0.0°

223532

PDB entries from 2024-08-07

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