DNE
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.48Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | C | sing | 1.51Å | 1.54Å | |
| CA | CB | sing | 1.53Å | 1.54Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | OXT | sing | 1.34Å | 34.94Å | |
| CB | CG | sing | 1.53Å | 1.54Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CB | HB3 | sing | 1.09Å | 1.10Å | |
| CG | CD | sing | 1.53Å | 1.53Å | |
| CG | HG2 | sing | 1.09Å | 1.10Å | |
| CG | HG3 | sing | 1.09Å | 1.10Å | |
| CD | CE | sing | 1.53Å | 1.53Å | |
| CD | HD2 | sing | 1.09Å | 1.10Å | |
| CD | HD3 | sing | 1.09Å | 1.10Å | |
| CE | HE1 | sing | 1.09Å | 1.10Å | |
| CE | HE2 | sing | 1.09Å | 1.10Å | |
| CE | HE3 | sing | 1.09Å | 1.10Å | |
| OXT | HXT | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| N | CA | C | 112.8° | 109.5° |
| N | CA | CB | 109.4° | 109.5° |
| N | CA | HA | 108.3° | 109.4° |
| H | N | H2 | 109.5° | 111.0° |
| C | CA | CB | 110.8° | 109.5° |
| C | CA | HA | 107.6° | 109.5° |
| CA | C | O | 119.7° | 120.0° |
| CA | C | OXT | 72.2° | 120.0° |
| CB | CA | HA | 107.7° | 109.5° |
| CA | CB | CG | 112.4° | 109.5° |
| CA | CB | HB2 | 108.7° | 109.5° |
| CA | CB | HB3 | 108.7° | 109.4° |
| O | C | OXT | 51.0° | 120.0° |
| C | OXT | HXT | 90.0° | 117.0° |
| CG | CB | HB2 | 108.8° | 109.5° |
| CG | CB | HB3 | 108.7° | 109.5° |
| CB | CG | CD | 112.0° | 109.4° |
| CB | CG | HG2 | 108.8° | 109.5° |
| CB | CG | HG3 | 108.8° | 109.5° |
| HB2 | CB | HB3 | 109.5° | 109.4° |
| CD | CG | HG2 | 108.8° | 109.5° |
| CD | CG | HG3 | 108.8° | 109.5° |
| CG | CD | CE | 112.7° | 109.5° |
| CG | CD | HD2 | 108.7° | 109.5° |
| CG | CD | HD3 | 108.7° | 109.5° |
| HG2 | CG | HG3 | 109.5° | 109.5° |
| CE | CD | HD2 | 108.7° | 109.4° |
| CE | CD | HD3 | 108.7° | 109.4° |
| CD | CE | HE1 | 109.5° | 109.4° |
| CD | CE | HE2 | 109.4° | 109.4° |
| CD | CE | HE3 | 109.5° | 109.5° |
| HD2 | CD | HD3 | 109.4° | 109.4° |
| HE1 | CE | HE2 | 109.5° | 109.4° |
| HE1 | CE | HE3 | 109.5° | 109.5° |
| HE2 | CE | HE3 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 120.0° | 123.9° |
| N | CA | C | CB | 123.0° | 120.0° |
| N | CA | C | HA | 119.5° | 120.0° |
| N | CA | CB | HA | 117.5° | 119.9° |
| N | CA | C | O | 177.9° | 20.0° |
| N | CA | C | OXT | 162.9° | 159.9° |
| N | CA | CB | CG | 63.2° | 65.0° |
| N | CA | CB | HB2 | 176.4° | 175.0° |
| N | CA | CB | HB3 | 57.2° | 55.1° |
| H | N | CA | C | 180.0° | 60.0° |
| H | N | CA | CB | 56.2° | 60.0° |
| H | N | CA | HA | 60.9° | 180.0° |
| H2 | N | CA | C | 60.0° | 63.9° |
| H2 | N | CA | CB | 63.8° | 176.1° |
| H2 | N | CA | HA | 179.1° | 56.1° |
| C | CA | CB | HA | 117.5° | 120.0° |
| CA | C | O | OXT | 23.8° | 179.9° |
| C | CA | CB | CG | 171.8° | 175.0° |
| C | CA | CB | HB2 | 51.4° | 55.0° |
| C | CA | CB | HB3 | 67.8° | 65.0° |
| CA | C | OXT | HXT | 90.0° | 180.0° |
| CB | CA | C | O | 54.9° | 100.0° |
| CB | CA | C | OXT | 74.1° | 80.1° |
| CA | CB | CG | HB2 | 120.4° | 120.0° |
| CA | CB | CG | HB3 | 120.4° | 120.0° |
| CA | CB | HB2 | HB3 | 118.7° | 120.0° |
| CA | CB | CG | CD | 177.1° | 180.0° |
| CA | CB | CG | HG2 | 56.7° | 60.0° |
| CA | CB | CG | HG3 | 62.5° | 60.0° |
| HA | CA | C | O | 62.6° | 140.0° |
| HA | CA | C | OXT | 43.4° | 40.0° |
| HA | CA | CB | CG | 54.3° | 55.0° |
| HA | CA | CB | HB2 | 66.1° | 65.0° |
| HA | CA | CB | HB3 | 174.7° | 175.0° |
| O | C | OXT | HXT | 90.0° | 0.1° |
| CG | CB | HB2 | HB3 | 118.7° | 120.0° |
| CB | CG | CD | HG2 | 120.4° | 120.0° |
| CB | CG | CD | HG3 | 120.4° | 120.0° |
| CB | CG | HG2 | HG3 | 118.8° | 120.0° |
| CB | CG | CD | CE | 68.2° | 180.0° |
| CB | CG | CD | HD2 | 52.3° | 60.0° |
| CB | CG | CD | HD3 | 171.3° | 60.0° |
| HB2 | CB | CG | CD | 62.5° | 60.0° |
| HB2 | CB | CG | HG2 | 177.1° | 180.0° |
| HB2 | CB | CG | HG3 | 57.9° | 60.0° |
| HB3 | CB | CG | CD | 56.7° | 60.0° |
| HB3 | CB | CG | HG2 | 63.7° | 60.0° |
| HB3 | CB | CG | HG3 | 177.1° | 180.0° |
| CD | CG | HG2 | HG3 | 118.9° | 120.0° |
| CG | CD | CE | HD2 | 120.5° | 120.0° |
| CG | CD | CE | HD3 | 120.5° | 120.0° |
| CG | CD | HD2 | HD3 | 118.5° | 120.1° |
| CG | CD | CE | HE1 | 180.0° | 60.0° |
| CG | CD | CE | HE2 | 60.0° | 60.0° |
| CG | CD | CE | HE3 | 60.0° | 180.0° |
| HG2 | CG | CD | CE | 171.4° | 60.0° |
| HG2 | CG | CD | HD2 | 68.1° | 180.0° |
| HG2 | CG | CD | HD3 | 50.9° | 60.0° |
| HG3 | CG | CD | CE | 52.2° | 60.0° |
| HG3 | CG | CD | HD2 | 172.6° | 60.0° |
| HG3 | CG | CD | HD3 | 68.4° | 180.0° |
| CE | CD | HD2 | HD3 | 118.5° | 119.9° |
| CD | CE | HE1 | HE2 | 120.0° | 119.9° |
| CD | CE | HE1 | HE3 | 120.0° | 120.1° |
| CD | CE | HE2 | HE3 | 120.0° | 120.1° |
| HD2 | CD | CE | HE1 | 59.5° | 180.0° |
| HD2 | CD | CE | HE2 | 179.5° | 60.1° |
| HD2 | CD | CE | HE3 | 60.5° | 60.0° |
| HD3 | CD | CE | HE1 | 59.5° | 60.1° |
| HD3 | CD | CE | HE2 | 60.5° | 180.0° |
| HD3 | CD | CE | HE3 | 179.5° | 60.0° |
| HE1 | CE | HE2 | HE3 | 120.0° | 120.0° |
