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Summary Geometry Related PDB entries

DN7

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C8	C7	doub	1.38Å	1.38Å	Aromatic
C8	C9	sing	1.39Å	1.37Å	Aromatic
C7	C6	sing	1.39Å	1.37Å	Aromatic
O2	C1	doub	1.22Å	1.27Å
C9	C10	doub	1.38Å	1.36Å	Aromatic
C3	C4	doub	1.38Å	1.38Å	Aromatic
C3	C2	sing	1.40Å	1.37Å	Aromatic
C4	C5	sing	1.39Å	1.37Å	Aromatic
C6	O3	sing	1.36Å	1.38Å
C6	N1	doub	1.32Å	1.33Å	Aromatic
C1	C2	sing	1.47Å	1.49Å
C1	O1	sing	1.35Å	1.26Å
C2	C12	doub	1.40Å	1.39Å	Aromatic
C5	O3	sing	1.36Å	1.39Å
C5	C11	doub	1.39Å	1.39Å	Aromatic
C10	N1	sing	1.32Å	1.33Å	Aromatic
C12	C11	sing	1.38Å	1.40Å	Aromatic
C12	H1	sing	1.08Å	1.08Å
C8	H2	sing	1.08Å	1.08Å
C7	H3	sing	1.08Å	1.08Å
C3	H4	sing	1.08Å	1.08Å
C4	H5	sing	1.08Å	1.08Å
O1	H6	sing	0.97Å	0.95Å
C9	H7	sing	1.08Å	1.08Å
C10	H8	sing	1.08Å	1.08Å
C11	H9	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C7	C8	C9	121.4°	118.5°
C8	C7	C6	118.1°	119.1°
C7	C8	H2	119.3°	120.8°
C8	C7	H3	120.9°	120.5°
C8	C9	C10	115.0°	119.3°
C9	C8	H2	119.3°	120.7°
C8	C9	H7	122.5°	120.4°
C7	C6	O3	123.1°	119.7°
C7	C6	N1	122.6°	120.6°
C6	C7	H3	120.9°	120.4°
O2	C1	C2	120.2°	120.0°
O2	C1	O1	125.1°	120.0°
C9	C10	N1	126.5°	120.8°
C10	C9	H7	122.5°	120.4°
C9	C10	H8	116.7°	119.6°
C4	C3	C2	122.8°	119.9°
C3	C4	C5	121.9°	120.1°
C4	C3	H4	118.6°	120.1°
C3	C4	H5	119.0°	119.9°
C3	C2	C1	118.1°	120.1°
C3	C2	C12	115.2°	119.8°
C2	C3	H4	118.6°	120.0°
C4	C5	O3	110.8°	120.0°
C4	C5	C11	116.8°	120.2°
C5	C4	H5	119.1°	119.9°
O3	C6	N1	114.1°	119.7°
C6	O3	C5	127.5°	118.0°
C6	N1	C10	116.3°	121.7°
C2	C1	O1	114.6°	120.0°
C1	C2	C12	126.7°	120.0°
C1	O1	H6	109.5°	117.0°
C2	C12	C11	122.6°	119.9°
C2	C12	H1	118.7°	120.1°
O3	C5	C11	132.0°	119.9°
C5	C11	C12	120.6°	120.1°
C5	C11	H9	119.7°	120.0°
N1	C10	H8	116.7°	119.6°
C11	C12	H1	118.7°	120.0°
C12	C11	H9	119.7°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C7	C8	C9	H2	180.0°	179.7°
C8	C7	C6	H3	180.0°	179.9°
C7	C8	C9	C10	0.3°	0.0°
C8	C7	C6	O3	175.8°	180.0°
C8	C7	C6	N1	1.7°	0.1°
C7	C8	C9	H7	179.7°	180.0°
C9	C8	C7	C6	0.2°	0.0°
C8	C9	C10	H7	180.0°	180.0°
C8	C9	C10	N1	0.7°	0.0°
C9	C8	C7	H3	179.8°	180.0°
C8	C9	C10	H8	179.3°	180.0°
C7	C6	O3	N1	174.6°	179.9°
C7	C6	O3	C5	43.2°	174.2°
C7	C6	N1	C10	2.5°	0.1°
C6	C7	C8	H2	179.8°	179.7°
O2	C1	C2	C3	31.9°	0.0°
O2	C1	C2	O1	176.6°	180.0°
O2	C1	C2	C12	150.7°	180.0°
O2	C1	O1	H6	0.0°	0.1°
C9	C10	N1	C6	2.1°	0.1°
C9	C10	N1	H8	180.0°	180.0°
C10	C9	C8	H2	179.7°	179.7°
C4	C3	C2	H4	180.0°	179.9°
C3	C4	C5	H5	180.0°	179.8°
C4	C3	C2	C1	178.0°	179.9°
C4	C3	C2	C12	0.3°	0.0°
C3	C4	C5	O3	177.2°	179.9°
C3	C4	C5	C11	3.5°	0.5°
C2	C3	C4	C5	1.7°	0.2°
C3	C2	C1	C12	177.4°	180.0°
C3	C2	C1	O1	144.7°	180.0°
C3	C2	C12	C11	0.4°	0.0°
C3	C2	C12	H1	179.6°	179.7°
C2	C3	C4	H5	178.3°	180.0°
C4	C5	O3	C6	142.5°	110.0°
C4	C5	O3	C11	172.4°	179.4°
C4	C5	C11	C12	3.4°	0.5°
C5	C4	C3	H4	178.3°	179.9°
C4	C5	C11	H9	176.6°	179.5°
C6	O3	C5	C11	45.1°	70.6°
O3	C6	N1	C10	177.1°	180.0°
O3	C6	C7	H3	4.2°	0.1°
N1	C6	O3	C5	142.2°	5.7°
N1	C6	C7	H3	178.3°	180.0°
C6	N1	C10	H8	177.9°	180.0°
C1	C2	C12	C11	177.9°	180.0°
C1	C2	C12	H1	2.2°	0.3°
C1	C2	C3	H4	2.0°	0.2°
C2	C1	O1	H6	176.4°	180.0°
O1	C1	C2	C12	32.7°	0.0°
C2	C12	C11	C5	1.5°	0.3°
C2	C12	C11	H1	180.0°	179.7°
C12	C2	C3	H4	179.7°	179.8°
C2	C12	C11	H9	178.5°	179.7°
O3	C5	C11	C12	175.4°	180.0°
O3	C5	C4	H5	2.8°	0.3°
O3	C5	C11	H9	4.6°	0.0°
C5	C11	C12	H9	180.0°	180.0°
C5	C11	C12	H1	178.5°	180.0°
C11	C5	C4	H5	176.5°	179.7°
N1	C10	C9	H7	179.3°	180.0°
H1	C12	C11	H9	1.5°	0.0°
H2	C8	C7	H3	0.2°	0.2°
H2	C8	C9	H7	0.3°	0.3°
H4	C3	C4	H5	1.7°	0.2°
H7	C9	C10	H8	0.8°	0.0°

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PDB entries from 2024-07-17

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