DN
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP3 | P | sing | 1.61Å | 1.48Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
P | OP1 | doub | 1.48Å | 1.47Å | |
P | OP2 | sing | 1.61Å | 1.46Å | |
P | O5' | sing | 1.61Å | 1.56Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.42Å | |
C5' | C4' | sing | 1.53Å | 1.48Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'' | sing | 1.09Å | 1.10Å | |
C4' | O4' | sing | 1.43Å | 1.44Å | |
C4' | C3' | sing | 1.54Å | 1.49Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O4' | C1' | sing | 1.44Å | 1.43Å | |
C3' | O3' | sing | 1.43Å | 1.44Å | |
C3' | C2' | sing | 1.55Å | 1.50Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | H2'2 | sing | 1.09Å | 1.10Å | |
C2' | C1' | sing | 1.55Å | 1.54Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C1' | H1'2 | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
P | OP3 | HOP3 | 109.5° | 114.0° |
OP3 | P | OP1 | 111.1° | 109.5° |
OP3 | P | OP2 | 114.6° | 109.4° |
OP3 | P | O5' | 100.9° | 109.5° |
OP1 | P | OP2 | 112.9° | 109.5° |
OP1 | P | O5' | 104.2° | 109.5° |
OP2 | P | O5' | 112.0° | 109.5° |
P | OP2 | HOP2 | 109.5° | 114.0° |
P | O5' | C5' | 126.9° | 123.0° |
O5' | C5' | C4' | 107.2° | 109.5° |
O5' | C5' | H5' | 110.2° | 109.5° |
O5' | C5' | H5'' | 110.2° | 109.4° |
C4' | C5' | H5' | 110.2° | 109.5° |
C4' | C5' | H5'' | 110.2° | 109.5° |
C5' | C4' | O4' | 112.3° | 109.8° |
C5' | C4' | C3' | 110.6° | 109.8° |
C5' | C4' | H4' | 106.2° | 109.8° |
H5' | C5' | H5'' | 108.7° | 109.5° |
O4' | C4' | C3' | 107.5° | 107.7° |
O4' | C4' | H4' | 109.3° | 109.8° |
C4' | O4' | C1' | 113.1° | 109.9° |
C3' | C4' | H4' | 111.1° | 109.9° |
C4' | C3' | O3' | 109.0° | 110.9° |
C4' | C3' | C2' | 104.9° | 102.2° |
C4' | C3' | H3' | 113.5° | 110.8° |
O4' | C1' | C2' | 103.8° | 105.1° |
O4' | C1' | H1' | 111.4° | 110.3° |
O4' | C1' | H1'2 | 111.4° | 110.3° |
O3' | C3' | C2' | 111.5° | 110.9° |
O3' | C3' | H3' | 107.1° | 110.8° |
C3' | O3' | HO3' | 109.5° | 114.0° |
C2' | C3' | H3' | 111.0° | 111.0° |
C3' | C2' | H2'2 | 109.9° | 111.1° |
C3' | C2' | C1' | 108.3° | 100.9° |
C3' | C2' | H2' | 109.9° | 111.1° |
H2'2 | C2' | C1' | 109.9° | 111.2° |
H2'2 | C2' | H2' | 109.1° | 111.0° |
C1' | C2' | H2' | 109.9° | 111.2° |
C2' | C1' | H1' | 111.4° | 110.3° |
C2' | C1' | H1'2 | 111.4° | 110.3° |
H1' | C1' | H1'2 | 107.5° | 110.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP3 | P | OP1 | OP2 | 130.3° | 120.0° |
OP3 | P | OP1 | O5' | 107.9° | 120.0° |
OP3 | P | OP2 | O5' | 114.1° | 120.0° |
OP3 | P | OP2 | HOP2 | 128.5° | 60.0° |
OP3 | P | O5' | C5' | 127.3° | 175.0° |
HOP3 | OP3 | P | OP1 | 0.0° | 60.0° |
HOP3 | OP3 | P | OP2 | 129.5° | 60.0° |
HOP3 | OP3 | P | O5' | 110.0° | 180.0° |
OP1 | P | OP2 | O5' | 117.3° | 120.0° |
OP1 | P | OP2 | HOP2 | 0.0° | 180.0° |
OP1 | P | O5' | C5' | 117.4° | 55.0° |
OP2 | P | O5' | C5' | 5.0° | 65.0° |
O5' | P | OP2 | HOP2 | 117.3° | 60.0° |
P | O5' | C5' | C4' | 132.4° | 180.0° |
P | O5' | C5' | H5' | 107.6° | 60.0° |
P | O5' | C5' | H5'' | 12.4° | 60.0° |
O5' | C5' | C4' | H5' | 120.0° | 120.0° |
O5' | C5' | C4' | H5'' | 120.0° | 120.0° |
O5' | C5' | H5' | H5'' | 120.9° | 119.9° |
O5' | C5' | C4' | O4' | 59.9° | 66.4° |
O5' | C5' | C4' | C3' | 179.9° | 175.4° |
O5' | C5' | C4' | H4' | 59.5° | 54.5° |
C4' | C5' | H5' | H5'' | 120.9° | 120.1° |
C5' | C4' | O4' | C3' | 121.8° | 119.6° |
C5' | C4' | O4' | H4' | 117.5° | 120.8° |
C5' | C4' | C3' | H4' | 117.6° | 120.8° |
C5' | C4' | O4' | C1' | 112.4° | 117.8° |
C5' | C4' | C3' | O3' | 132.5° | 100.9° |
C5' | C4' | C3' | C2' | 108.0° | 140.9° |
C5' | C4' | C3' | H3' | 13.3° | 22.6° |
H5' | C5' | C4' | O4' | 60.1° | 53.6° |
H5' | C5' | C4' | C3' | 60.0° | 64.6° |
H5' | C5' | C4' | H4' | 179.5° | 174.4° |
H5'' | C5' | C4' | O4' | 179.9° | 173.6° |
H5'' | C5' | C4' | C3' | 60.1° | 55.4° |
H5'' | C5' | C4' | H4' | 60.5° | 65.5° |
O4' | C4' | C3' | H4' | 119.5° | 119.6° |
O4' | C4' | C3' | O3' | 104.7° | 139.5° |
O4' | C4' | C3' | C2' | 14.9° | 21.3° |
O4' | C4' | C3' | H3' | 136.1° | 97.0° |
C4' | O4' | C1' | C2' | 0.2° | 24.5° |
C4' | O4' | C1' | H1' | 119.8° | 143.3° |
C4' | O4' | C1' | H1'2 | 120.2° | 94.5° |
C3' | C4' | O4' | C1' | 9.4° | 1.7° |
C4' | C3' | O3' | C2' | 115.3° | 112.8° |
C4' | C3' | O3' | H3' | 123.1° | 123.5° |
C4' | C3' | C2' | H3' | 122.9° | 118.2° |
C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
C4' | C3' | C2' | H2'2 | 104.9° | 83.8° |
C4' | C3' | C2' | C1' | 15.1° | 34.1° |
C4' | C3' | C2' | H2' | 135.1° | 152.1° |
H4' | C4' | O4' | C1' | 130.1° | 121.4° |
H4' | C4' | C3' | O3' | 14.9° | 19.9° |
H4' | C4' | C3' | C2' | 134.4° | 98.3° |
H4' | C4' | C3' | H3' | 104.3° | 143.4° |
O4' | C1' | C2' | C3' | 9.7° | 36.5° |
O4' | C1' | C2' | H2'2 | 110.3° | 81.4° |
O4' | C1' | C2' | H1' | 120.0° | 118.9° |
O4' | C1' | C2' | H1'2 | 120.0° | 118.9° |
O4' | C1' | C2' | H2' | 129.7° | 154.4° |
O4' | C1' | H1' | H1'2 | 122.3° | 122.2° |
O3' | C3' | C2' | H3' | 119.3° | 123.6° |
O3' | C3' | C2' | H2'2 | 137.4° | 34.4° |
O3' | C3' | C2' | C1' | 102.7° | 152.3° |
O3' | C3' | C2' | H2' | 17.3° | 89.7° |
C2' | C3' | O3' | HO3' | 64.7° | 67.1° |
C3' | C2' | H2'2 | C1' | 119.0° | 111.5° |
C3' | C2' | H2'2 | H2' | 120.5° | 124.2° |
C3' | C2' | C1' | H2' | 120.0° | 117.9° |
C3' | C2' | C1' | H1' | 110.3° | 155.4° |
C3' | C2' | C1' | H1'2 | 129.7° | 82.5° |
H3' | C3' | O3' | HO3' | 56.9° | 56.6° |
H3' | C3' | C2' | H2'2 | 18.1° | 158.0° |
H3' | C3' | C2' | C1' | 138.1° | 84.1° |
H3' | C3' | C2' | H2' | 101.9° | 33.8° |
H2'2 | C2' | C1' | H2' | 120.0° | 124.2° |
H2'2 | C2' | C1' | H1' | 129.7° | 37.5° |
H2'2 | C2' | C1' | H1'2 | 9.7° | 159.7° |
C2' | C1' | H1' | H1'2 | 122.3° | 122.1° |
H2' | C2' | C1' | H1' | 9.7° | 86.7° |
H2' | C2' | C1' | H1'2 | 110.3° | 35.4° |