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DMM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.39Å1.40ÅAromatic
C1C20sing1.39Å1.36ÅAromatic
C1H1sing1.08Å1.10Å
C2C3sing1.38Å1.38ÅAromatic
C2H2sing1.08Å1.10Å
C3C4doub1.39Å1.39ÅAromatic
C3H3sing1.08Å1.10Å
C4O4sing1.36Å1.38Å
C4C5sing1.40Å1.40ÅAromatic
O4C21sing1.43Å1.45Å
C5C6sing1.48Å1.38Å
C5C20doub1.41Å1.41ÅAromatic
C6O6doub1.22Å1.38Å
C6C7sing1.47Å1.41Å
C7C8doub1.39Å1.39ÅAromatic
C7C18sing1.41Å1.43ÅAromatic
C8O8sing1.36Å1.41Å
C8C9sing1.40Å1.42ÅAromatic
O8HO8sing0.97Å0.95Å
C9C10sing1.51Å1.47Å
C9C16doub1.37Å1.38ÅAromatic
C10O10sing1.43Å1.41Å
C10C11sing1.53Å1.54Å
C10H10sing1.09Å1.11Å
O10C1'sing1.43Å1.39Å
C11C12sing1.53Å1.59Å
C11H111sing1.09Å1.11Å
C11H112sing1.09Å1.11Å
C12O12sing1.43Å1.46Å
C12C13sing1.51Å1.52Å
C12C15sing1.53Å1.57Å
O12HO12sing0.97Å0.95Å
C13O13doub1.21Å1.38Å
C13C14sing1.51Å1.54Å
C14O14sing1.43Å1.43Å
C14H141sing1.09Å1.11Å
C14H142sing1.09Å1.11Å
O14HO14sing0.97Å0.95Å
C15C16sing1.51Å1.52Å
C15H151sing1.09Å1.11Å
C15H152sing1.09Å1.11Å
C16C17sing1.40Å1.40ÅAromatic
C17O17sing1.36Å1.36Å
C17C18doub1.39Å1.41ÅAromatic
O17HO17sing0.97Å0.95Å
C18C19sing1.47Å1.40Å
C19O19doub1.21Å1.31Å
C19C20sing1.48Å1.40Å
C21H211sing1.09Å1.11Å
C21H212sing1.09Å1.11Å
C21H213sing1.09Å1.12Å
C1'C2'sing1.53Å1.56Å
C1'O5'sing1.43Å1.40Å
C1'H1'sing1.09Å1.11Å
C2'C3'sing1.53Å1.58Å
C2'H2'1sing1.09Å1.11Å
C2'H2'2sing1.09Å1.11Å
C3'C4'sing1.53Å1.50Å
C3'N3'sing1.47Å1.51Å
C3'H3'sing1.09Å1.12Å
C4'O4'sing1.43Å1.39Å
C4'C5'sing1.53Å1.52Å
C4'H4'sing1.09Å1.12Å
O4'HO4'sing0.97Å0.95Å
C5'O5'sing1.43Å1.49Å
C5'C6'sing1.53Å1.52Å
C5'H5'sing1.09Å1.12Å
C6'H6'1sing1.09Å1.11Å
C6'H6'2sing1.09Å1.11Å
C6'H6'3sing1.09Å1.12Å
N3'C33sing1.47Å1.50Å
N3'C53sing1.47Å1.42Å
C33C23sing1.53Å1.54Å
C33H331sing1.09Å1.12Å
C33H332sing1.09Å1.11Å
C23O16sing1.43Å1.42Å
C23O23sing1.43Å1.43Å
C23H23sing1.09Å1.12Å
O16C63sing1.43Å1.51Å
C63C53sing1.53Å1.41Å
C63H631sing1.09Å1.11Å
C63H632sing1.09Å1.11Å
C53H531sing1.09Å1.11Å
C53H532sing1.09Å1.12Å
O23C73sing1.43Å1.44Å
C73H731sing1.09Å1.11Å
C73H732sing1.09Å1.12Å
C73H733sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C20122.5°119.9°
C2C1H1120.3°120.1°
C1C2C3118.9°120.6°
C1C2H2121.3°119.7°
C20C1H1117.2°120.0°
C1C20C5119.1°119.7°
C1C20C19119.9°120.6°
C3C2H2119.7°119.7°
C2C3C4119.0°120.4°
C2C3H3120.1°119.8°
C4C3H3120.9°119.8°
C3C4O4113.5°120.2°
C3C4C5122.0°119.7°
O4C4C5124.5°120.2°
C4O4C21114.8°106.8°
C4C5C6124.0°120.7°
C4C5C20118.2°119.6°
O4C21H211114.9°109.4°
O4C21H212110.2°109.4°
O4C21H213110.2°109.5°
C6C5C20117.5°119.7°
C5C6O6116.4°120.3°
C5C6C7124.5°119.2°
C5C20C19120.7°119.7°
O6C6C7119.0°120.4°
C6C7C8123.3°120.8°
C6C7C18116.0°119.7°
C8C7C18120.8°119.5°
C7C8O8125.2°119.8°
C7C8C9120.8°120.5°
C7C18C17117.6°119.4°
C7C18C19121.1°119.8°
O8C8C9114.1°119.7°
C8O8HO8125.1°106.8°
C8C9C10117.6°117.3°
C8C9C16118.8°120.1°
C10C9C16123.5°122.6°
C9C10O10106.7°109.3°
C9C10C11116.8°110.7°
C9C10H10108.4°109.2°
C9C16C15120.2°122.5°
C9C16C17121.2°120.1°
O10C10C11114.8°109.3°
O10C10H10110.7°109.2°
C10O10C1'129.2°106.9°
C11C10H1099.1°109.1°
C10C11C12107.7°108.3°
C10C11H111112.9°109.8°
C10C11H112112.9°109.6°
O10C1'C2'112.2°109.4°
O10C1'O5'112.5°109.4°
O10C1'H1'107.4°109.4°
C12C11H111112.9°109.7°
C12C11H112112.9°109.7°
C11C12O12118.2°109.7°
C11C12C13111.0°109.7°
C11C12C15108.2°108.3°
H111C11H11297.6°109.7°
O12C12C13107.4°109.7°
O12C12C15102.3°109.7°
C12O12HO12118.2°106.8°
C13C12C15109.2°109.7°
C12C13O13119.0°120.0°
C12C13C14121.2°120.0°
C12C15C16113.6°110.7°
C12C15H151110.7°109.2°
C12C15H152110.7°109.3°
O13C13C14119.5°120.0°
C13C14O14111.4°109.5°
C13C14H141111.5°109.4°
C13C14H142111.5°109.5°
O14C14H141111.5°109.4°
O14C14H142111.5°109.5°
C14O14HO14111.4°106.8°
H141C14H14298.9°109.5°
C16C15H151110.7°109.2°
C16C15H152110.7°109.2°
C15C16C17118.6°117.4°
H151C15H15299.6°109.2°
C16C17O17115.2°119.8°
C16C17C18120.9°120.5°
O17C17C18123.9°119.8°
C17O17HO17115.1°106.7°
C17C18C19121.4°120.8°
C18C19O19123.7°120.5°
C18C19C20120.0°119.1°
O19C19C20116.2°120.4°
H211C21H212110.3°109.5°
H211C21H213110.3°109.5°
H212C21H213100.0°109.5°
C2'C1'O5'114.9°109.8°
C2'C1'H1'104.6°109.4°
C1'C2'C3'108.2°109.0°
C1'C2'H2'1112.7°109.5°
C1'C2'H2'2112.7°109.5°
O5'C1'H1'104.3°109.4°
C1'O5'C5'113.4°107.6°
C3'C2'H2'1112.7°109.6°
C3'C2'H2'2112.7°109.5°
C2'C3'C4'111.3°108.8°
C2'C3'N3'111.9°109.6°
C2'C3'H3'109.8°109.6°
H2'1C2'H2'297.8°109.7°
C4'C3'N3'117.6°109.5°
C4'C3'H3'102.9°109.6°
C3'C4'O4'116.5°109.5°
C3'C4'C5'118.4°109.0°
C3'C4'H4'94.9°109.8°
N3'C3'H3'102.2°109.6°
C3'N3'C33113.8°106.7°
C3'N3'C53115.9°106.7°
O4'C4'C5'99.8°109.5°
O4'C4'H4'115.2°109.5°
C4'O4'HO4'116.4°106.8°
C5'C4'H4'113.1°109.5°
C4'C5'O5'108.1°109.9°
C4'C5'C6'113.1°109.4°
C4'C5'H5'108.3°109.3°
O5'C5'C6'110.4°109.4°
O5'C5'H5'111.1°109.4°
C6'C5'H5'105.9°109.4°
C5'C6'H6'1113.1°109.5°
C5'C6'H6'2110.9°109.5°
C5'C6'H6'3110.8°109.4°
H6'1C6'H6'2110.9°109.5°
H6'1C6'H6'3110.9°109.5°
H6'2C6'H6'399.4°109.5°
C33N3'C53114.5°106.7°
N3'C33C23109.4°109.5°
N3'C33H331112.2°109.5°
N3'C33H332112.3°109.4°
N3'C53C63121.5°109.5°
N3'C53H531107.9°109.5°
N3'C53H532107.9°109.5°
C23C33H331112.2°109.5°
C23C33H332112.3°109.5°
C33C23O16109.3°109.7°
C33C23O23115.6°109.5°
C33C23H23105.1°109.4°
H331C33H33298.2°109.4°
O16C23O23108.6°109.4°
O16C23H23112.5°109.4°
C23O16C63125.7°107.2°
O23C23H23105.8°109.5°
C23O23C73120.6°106.8°
O16C63C53113.0°109.7°
O16C63H631110.9°109.4°
O16C63H632110.9°109.5°
C53C63H631110.9°109.4°
C53C63H632110.9°109.4°
C63C53H531107.9°109.5°
C63C53H532107.9°109.5°
H631C63H63299.4°109.4°
H531C53H532102.0°109.4°
O23C73H731120.7°109.5°
O23C73H732108.2°109.5°
O23C73H733108.2°109.5°
H731C73H732108.2°109.4°
H731C73H733108.2°109.5°
H732C73H733101.7°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C20H1180.0°180.0°
C1C2C3H2179.9°180.0°
C1C2C3C41.2°0.0°
C1C2C3H3178.7°180.0°
C2C1C20C56.2°0.1°
C2C1C20C19179.4°180.0°
C20C1C2C32.9°0.0°
C20C1C2H2177.1°180.0°
C1C20C5C45.3°0.1°
C1C20C5C6179.6°179.9°
C1C20C5C19174.3°179.9°
C1C20C19C18178.3°166.1°
C1C20C19O195.2°13.9°
H1C1C2C3177.1°179.9°
H1C1C2H22.9°0.0°
H1C1C20C5173.8°179.9°
H1C1C20C190.6°0.0°
C2C3C4H3180.0°180.0°
C2C3C4O4178.9°180.0°
C2C3C4C51.9°0.0°
H2C2C3C4178.8°180.0°
H2C2C3H31.2°0.0°
C3C4O4C5179.1°180.0°
C3C4O4C219.1°0.0°
C3C4C5C6176.1°179.9°
C3C4C5C201.4°0.1°
H3C3C4O41.1°0.0°
H3C3C4C5178.1°180.0°
O4C4C5C63.0°0.1°
O4C4C5C20177.7°179.9°
C4O4C21H211180.0°180.0°
C4O4C21H21254.7°60.0°
C4O4C21H21354.7°60.0°
C5C4O4C21170.0°180.0°
C4C5C6C20174.7°180.0°
C4C5C6O65.1°13.8°
C4C5C6C7178.3°166.3°
C4C5C20C19179.6°180.0°
O4C21H211H212125.3°119.9°
O4C21H211H213125.3°120.0°
O4C21H212H213116.0°120.0°
C5C6O6C7176.8°179.9°
C5C6C7C8179.4°166.3°
C5C6C7C180.5°13.7°
C6C5C20C195.3°0.0°
C20C5C6O6179.8°166.2°
C20C5C6C73.6°13.7°
C5C20C19C184.1°13.8°
C5C20C19O19179.4°166.2°
O6C6C7C82.9°13.8°
O6C6C7C18177.0°166.2°
C6C7C8C18179.9°180.0°
C6C7C8O80.2°0.1°
C6C7C8C9179.6°179.8°
C6C7C18C17179.4°179.8°
C6C7C18C190.9°0.1°
C7C8O8C9179.5°180.0°
C7C8O8HO8180.0°84.6°
C7C8C9C10177.6°179.7°
C7C8C9C160.8°0.1°
C8C7C18C170.5°0.2°
C8C7C18C19179.2°179.9°
C18C7C8O8179.7°179.9°
C18C7C8C90.3°0.1°
C7C18C17C160.3°0.0°
C7C18C17O17178.4°180.0°
C7C18C17C19179.7°179.9°
C7C18C19O19177.1°166.2°
C7C18C19C200.9°13.8°
O8C8C9C101.8°0.3°
O8C8C9C16178.7°179.9°
C9C8O8HO80.6°95.4°
C8C9C10C16176.7°179.8°
C8C9C10O1063.0°42.1°
C8C9C10C11167.1°162.5°
C8C9C10H1056.3°77.3°
C8C9C16C15179.4°179.7°
C8C9C16C171.6°0.3°
C9C10O10C11131.1°121.3°
C9C10O10H10117.7°119.4°
C9C10C11H10116.0°120.2°
C9C10O10C1'144.6°130.6°
C9C10C11C1242.2°51.1°
C9C10C11H11183.0°170.9°
C9C10C11H112167.5°68.5°
C10C9C16C153.9°0.6°
C10C9C16C17178.3°179.5°
C16C9C10O10120.3°138.1°
C16C9C10C119.6°17.7°
C16C9C10H10120.4°102.5°
C9C16C15C1218.0°17.6°
C9C16C15C17177.9°179.9°
C9C16C15H151107.3°137.9°
C9C16C15H152143.2°102.7°
C9C16C17O17177.4°179.8°
C9C16C17C181.4°0.2°
O10C10C11H10118.0°119.3°
O10C10C11C1283.8°171.5°
O10C10C11H111151.0°68.7°
O10C10C11H11241.5°51.9°
C10O10C1'C2'154.1°166.3°
C10O10C1'O5'74.5°73.3°
C10O10C1'H1'39.7°46.5°
C11C10O10C1'84.3°108.1°
C10C11C12H111125.3°119.8°
C10C11C12H112125.2°119.6°
C10C11H111H112118.8°120.6°
C10C11C12O1254.2°170.6°
C10C11C12C13178.9°50.0°
C10C11C12C1561.3°69.8°
H10C10O10C1'26.9°11.2°
H10C10C11C12158.2°69.1°
H10C10C11H11133.0°50.6°
H10C10C11H11276.5°171.2°
O10C1'C2'O5'130.2°120.1°
O10C1'C2'H1'116.1°119.8°
O10C1'O5'H1'116.1°119.8°
O10C1'C2'C3'75.8°58.8°
O10C1'C2'H2'1158.9°61.0°
O10C1'C2'H2'249.4°178.7°
O10C1'O5'C5'67.8°52.5°
C12C11H111H112118.8°120.5°
C11C12O12C13126.4°120.6°
C11C12O12C15118.6°118.8°
C11C12C13C15119.2°118.8°
C11C12O12HO12180.0°180.0°
C11C12C13O1393.1°95.6°
C11C12C13C1493.0°84.5°
C11C12C15C1650.4°51.0°
C11C12C15H15174.8°171.3°
C11C12C15H152175.7°69.3°
H111C11C12O12179.5°50.8°
H111C11C12C1355.8°69.8°
H111C11C12C1564.0°170.5°
H112C11C12O1271.0°69.8°
H112C11C12C1353.7°169.6°
H112C11C12C15173.5°49.9°
O12C12C13C15110.2°120.6°
O12C12C13O13136.3°143.9°
O12C12C13C1437.6°36.0°
O12C12C15C1675.1°170.7°
O12C12C15H151159.7°69.0°
O12C12C15H15250.2°50.4°
C13C12O12HO1253.6°59.4°
C12C13O13C14174.0°179.9°
C12C13C14O14164.0°180.0°
C12C13C14H14138.7°60.1°
C12C13C14H14270.7°60.0°
C13C12C15C16171.3°68.7°
C13C12C15H15146.1°51.6°
C13C12C15H15263.4°171.0°
C15C12O12HO1261.3°61.2°
C15C12C13O1326.1°23.3°
C15C12C13C14147.9°156.6°
C12C15C16H151125.2°120.3°
C12C15C16H152125.3°120.3°
C12C15H151H152116.6°119.5°
C12C15C16C17160.0°162.4°
O13C13C14O1422.1°0.1°
O13C13C14H141147.3°120.0°
O13C13C14H142103.2°119.9°
C13C14O14H141125.3°119.9°
C13C14O14H142125.3°120.1°
C13C14H141H142117.3°120.1°
C13C14O14HO14180.0°179.9°
O14C14H141H142117.4°120.0°
H141C14O14HO1454.7°60.0°
H142C14O14HO1454.8°60.0°
C16C15H151H152116.6°119.3°
C15C16C17O170.5°0.3°
C15C16C17C18179.3°179.7°
H151C15C16C1774.8°42.1°
H152C15C16C1734.7°77.2°
C16C17O17C18178.7°180.0°
C16C17O17HO17179.9°90.0°
C16C17C18C19180.0°179.9°
O17C17C18C191.3°0.1°
C18C17O17HO171.2°90.0°
C17C18C19O192.6°13.9°
C17C18C19C20178.8°166.1°
C18C19O19C20176.3°180.0°
H211C21H212H213116.1°120.1°
C2'C1'O5'H1'113.9°120.1°
C1'C2'C3'H2'1125.3°119.8°
C1'C2'C3'H2'2125.2°119.8°
C1'C2'H2'1H2'2118.6°120.2°
C1'C2'C3'C4'43.8°53.7°
C1'C2'C3'N3'177.7°173.5°
C1'C2'C3'H3'69.5°66.2°
C2'C1'O5'C5'62.2°67.6°
O5'C1'C2'C3'54.4°61.3°
O5'C1'C2'H2'170.9°178.9°
O5'C1'C2'H2'2179.6°58.6°
C1'O5'C5'C4'55.2°67.5°
C1'O5'C5'C6'179.4°172.3°
C1'O5'C5'H5'63.4°52.5°
H1'C1'C2'C3'168.1°178.6°
H1'C1'C2'H2'142.8°58.8°
H1'C1'C2'H2'266.7°61.5°
H1'C1'O5'C5'176.1°172.3°
C3'C2'H2'1H2'2118.6°120.3°
C2'C3'C4'N3'131.0°119.8°
C2'C3'C4'H3'117.6°119.9°
C2'C3'N3'H3'117.5°120.3°
C2'C3'C4'O4'73.2°66.3°
C2'C3'C4'C5'45.8°53.5°
C2'C3'C4'H4'165.4°173.4°
C2'C3'N3'C33169.9°60.3°
C2'C3'N3'C5354.2°174.1°
H2'1C2'C3'C4'81.5°173.5°
H2'1C2'C3'N3'52.4°66.7°
H2'1C2'C3'H3'165.2°53.6°
H2'2C2'C3'C4'169.1°66.2°
H2'2C2'C3'N3'57.0°53.6°
H2'2C2'C3'H3'55.8°173.9°
C4'C3'N3'H3'111.8°120.3°
C3'C4'O4'C5'128.7°119.4°
C3'C4'O4'H4'109.9°120.4°
C3'C4'C5'H4'109.7°120.1°
C3'C4'O4'HO4'180.0°179.4°
C3'C4'C5'O5'48.8°61.0°
C3'C4'C5'C6'171.4°178.8°
C3'C4'C5'H5'71.6°59.1°
C4'C3'N3'C3339.1°179.7°
C4'C3'N3'C53175.0°66.6°
N3'C3'C4'O4'57.8°53.5°
N3'C3'C4'C5'176.9°173.3°
N3'C3'C4'H4'63.6°66.7°
C3'N3'C33C53136.5°113.8°
C3'N3'C33C23167.3°173.1°
C3'N3'C33H33167.5°53.0°
C3'N3'C33H33242.0°66.9°
C3'N3'C53C63174.3°173.0°
C3'N3'C53H53160.4°53.0°
C3'N3'C53H53249.1°66.9°
H3'C3'C4'O4'169.2°173.9°
H3'C3'C4'C5'71.8°66.4°
H3'C3'C4'H4'47.8°53.6°
H3'C3'N3'C3372.7°60.0°
H3'C3'N3'C5363.2°53.7°
O4'C4'C5'H4'122.9°120.2°
O4'C4'C5'O5'78.6°58.7°
O4'C4'C5'C6'43.9°61.5°
O4'C4'C5'H5'161.0°178.8°
C5'C4'O4'HO4'51.3°60.0°
C4'C5'O5'C6'124.2°120.2°
C4'C5'O5'H5'118.6°120.0°
C4'C5'C6'H5'118.4°119.7°
C4'C5'C6'H6'1180.0°179.5°
C4'C5'C6'H6'254.7°60.5°
C4'C5'C6'H6'354.8°59.5°
H4'C4'O4'HO4'70.1°60.2°
H4'C4'C5'O5'158.5°178.9°
H4'C4'C5'C6'79.0°58.7°
H4'C4'C5'H5'38.0°61.0°
O5'C5'C6'H5'120.3°119.8°
O5'C5'C6'H6'158.8°59.9°
O5'C5'C6'H6'266.6°60.0°
O5'C5'C6'H6'3176.0°180.0°
C5'C6'H6'1H6'2125.3°120.0°
C5'C6'H6'1H6'3125.2°120.0°
C5'C6'H6'2H6'3116.7°119.9°
H5'C5'C6'H6'161.6°59.9°
H5'C5'C6'H6'2173.1°179.9°
H5'C5'C6'H6'363.7°60.2°
H6'1C6'H6'2H6'3116.8°120.1°
N3'C33C23H331125.2°120.1°
N3'C33C23H332125.3°120.0°
N3'C33H331H332118.2°119.9°
N3'C33C23O1650.5°62.9°
N3'C33C23O2372.3°177.1°
N3'C33C23H23171.5°57.1°
C33N3'C53C6338.7°59.3°
C33N3'C53H531164.0°60.8°
C33N3'C53H53286.5°179.3°
C53N3'C33C2356.2°59.3°
C53N3'C33H33169.0°60.8°
C53N3'C33H332178.5°179.3°
N3'C53C63O1614.7°62.9°
N3'C53C63H531125.3°120.1°
N3'C53C63H532125.2°120.0°
N3'C53C63H631139.9°177.1°
N3'C53C63H632110.6°57.2°
N3'C53H531H532113.5°120.0°
C23C33H331H332118.2°120.0°
C33C23O16O23126.9°120.0°
C33C23O16H23116.3°120.0°
C33C23O23H23115.8°120.0°
C33C23O16C6331.6°63.2°
C33C23O23C73172.8°179.9°
H331C33C23O1674.7°57.1°
H331C33C23O23162.5°62.9°
H331C33C23H2346.3°177.2°
H332C33C23O16175.8°177.1°
H332C33C23O2353.0°57.0°
H332C33C23H2363.2°62.9°
O16C23O23H23121.0°119.9°
C23O16C63C5312.6°63.2°
C23O16C63H631137.9°176.7°
C23O16C63H632112.7°56.8°
O16C23O23C7349.7°59.9°
O23C23O16C6395.3°176.7°
C23O23C73H731180.0°180.0°
C23O23C73H73254.7°60.0°
C23O23C73H73354.7°59.9°
H23C23O16C63147.9°56.8°
H23C23O23C7371.3°60.0°
O16C63C53H631125.2°120.0°
O16C63C53H632125.3°120.1°
O16C63H631H632116.8°119.9°
O16C63C53H531140.0°57.2°
O16C63C53H532110.5°177.1°
C53C63H631H632116.8°119.9°
C63C53H531H532113.5°119.9°
H631C63C53H53194.8°62.9°
H631C63C53H53214.7°57.0°
H632C63C53H53114.7°177.2°
H632C63C53H532124.2°62.9°
O23C73H731H732125.3°120.0°
O23C73H731H733125.3°120.1°
O23C73H732H733113.8°120.0°
H731C73H732H733113.8°120.0°

227344

PDB entries from 2024-11-13

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