DMK
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.46Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CA | C | sing | 1.51Å | 1.53Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | CG1 | sing | 1.51Å | 1.56Å | |
| CB | CG2 | sing | 1.53Å | 1.56Å | |
| CB | CG3 | sing | 1.53Å | 1.56Å | |
| CG1 | OD1 | sing | 1.34Å | 1.24Å | |
| CG1 | OD2 | doub | 1.21Å | 1.24Å | |
| CG2 | HG21 | sing | 1.09Å | 1.10Å | |
| CG2 | HG22 | sing | 1.09Å | 1.10Å | |
| CG2 | HG23 | sing | 1.09Å | 1.10Å | |
| CG3 | HG31 | sing | 1.09Å | 1.10Å | |
| CG3 | HG32 | sing | 1.09Å | 1.10Å | |
| CG3 | HG33 | sing | 1.09Å | 1.10Å | |
| OD1 | HD1 | sing | 0.97Å | 0.95Å | |
| C | O | doub | 1.21Å | 1.24Å | |
| C | OXT | sing | 1.34Å | 50.73Å | |
| OXT | HXT | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.4° | 111.0° |
| N | CA | CB | 111.2° | 109.5° |
| N | CA | C | 108.5° | 109.5° |
| N | CA | HA | 109.6° | 109.5° |
| H | N | H2 | 109.5° | 111.0° |
| CB | CA | C | 110.5° | 109.4° |
| CB | CA | HA | 108.5° | 109.5° |
| CA | CB | CG1 | 113.0° | 109.5° |
| CA | CB | CG2 | 109.0° | 109.5° |
| CA | CB | CG3 | 108.8° | 109.5° |
| C | CA | HA | 108.5° | 109.5° |
| CA | C | O | 121.5° | 120.0° |
| CA | C | OXT | 122.1° | 120.0° |
| CG1 | CB | CG2 | 109.4° | 109.5° |
| CG1 | CB | CG3 | 107.1° | 109.4° |
| CB | CG1 | OD1 | 122.7° | 120.0° |
| CB | CG1 | OD2 | 125.9° | 120.0° |
| CG2 | CB | CG3 | 109.5° | 109.5° |
| CB | CG2 | HG21 | 109.5° | 109.5° |
| CB | CG2 | HG22 | 109.5° | 109.5° |
| CB | CG2 | HG23 | 109.5° | 109.4° |
| CB | CG3 | HG31 | 109.5° | 109.4° |
| CB | CG3 | HG32 | 109.4° | 109.5° |
| CB | CG3 | HG33 | 109.5° | 109.4° |
| OD1 | CG1 | OD2 | 111.4° | 120.0° |
| CG1 | OD1 | HD1 | 109.5° | 117.0° |
| HG21 | CG2 | HG22 | 109.4° | 109.5° |
| HG21 | CG2 | HG23 | 109.5° | 109.5° |
| HG22 | CG2 | HG23 | 109.5° | 109.5° |
| HG31 | CG3 | HG32 | 109.5° | 109.5° |
| HG31 | CG3 | HG33 | 109.4° | 109.5° |
| HG32 | CG3 | HG33 | 109.5° | 109.5° |
| O | C | OXT | 112.5° | 120.0° |
| C | OXT | HXT | 90.0° | 117.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 120.0° | 124.0° |
| N | CA | CB | C | 120.6° | 120.0° |
| N | CA | CB | HA | 120.6° | 120.0° |
| N | CA | C | HA | 119.0° | 120.0° |
| N | CA | CB | CG1 | 80.5° | 60.0° |
| N | CA | CB | CG2 | 41.3° | 60.0° |
| N | CA | CB | CG3 | 160.7° | 180.0° |
| N | CA | C | O | 49.5° | 20.0° |
| N | CA | C | OXT | 106.7° | 160.0° |
| H | N | CA | CB | 180.0° | 60.0° |
| H | N | CA | C | 58.3° | 60.0° |
| H | N | CA | HA | 60.1° | 180.0° |
| H2 | N | CA | CB | 60.0° | 63.9° |
| H2 | N | CA | C | 61.7° | 176.1° |
| H2 | N | CA | HA | 180.0° | 56.1° |
| CB | CA | C | HA | 118.9° | 120.0° |
| CA | CB | CG1 | CG2 | 121.6° | 120.0° |
| CA | CB | CG1 | CG3 | 119.8° | 120.0° |
| CA | CB | CG2 | CG3 | 118.9° | 120.0° |
| CA | CB | CG1 | OD1 | 63.3° | 180.0° |
| CA | CB | CG1 | OD2 | 119.6° | 0.0° |
| CA | CB | CG2 | HG21 | 180.0° | 60.0° |
| CA | CB | CG2 | HG22 | 60.0° | 180.0° |
| CA | CB | CG2 | HG23 | 60.0° | 60.0° |
| CA | CB | CG3 | HG31 | 180.0° | 60.0° |
| CA | CB | CG3 | HG32 | 60.0° | 180.0° |
| CA | CB | CG3 | HG33 | 60.0° | 60.0° |
| CB | CA | C | O | 72.6° | 100.0° |
| CB | CA | C | OXT | 131.1° | 80.0° |
| C | CA | CB | CG1 | 158.9° | 180.0° |
| C | CA | CB | CG2 | 79.2° | 60.0° |
| C | CA | CB | CG3 | 40.1° | 60.0° |
| CA | C | O | OXT | 158.3° | 180.0° |
| CA | C | OXT | HXT | 90.0° | 179.9° |
| HA | CA | CB | CG1 | 40.0° | 60.0° |
| HA | CA | CB | CG2 | 161.9° | 180.0° |
| HA | CA | CB | CG3 | 78.8° | 60.0° |
| HA | CA | C | O | 168.5° | 140.0° |
| HA | CA | C | OXT | 12.2° | 40.0° |
| CG1 | CB | CG2 | CG3 | 117.1° | 120.0° |
| CB | CG1 | OD1 | OD2 | 177.5° | 180.0° |
| CG1 | CB | CG2 | HG21 | 56.0° | 180.0° |
| CG1 | CB | CG2 | HG22 | 64.0° | 60.0° |
| CG1 | CB | CG2 | HG23 | 176.0° | 60.0° |
| CG1 | CB | CG3 | HG31 | 57.6° | 60.0° |
| CG1 | CB | CG3 | HG32 | 177.6° | 60.0° |
| CG1 | CB | CG3 | HG33 | 62.4° | 180.0° |
| CB | CG1 | OD1 | HD1 | 177.5° | 180.0° |
| CG2 | CB | CG1 | OD1 | 175.0° | 60.0° |
| CG2 | CB | CG1 | OD2 | 2.1° | 120.0° |
| CB | CG2 | HG21 | HG22 | 120.0° | 120.0° |
| CB | CG2 | HG21 | HG23 | 120.0° | 120.0° |
| CB | CG2 | HG22 | HG23 | 120.0° | 120.0° |
| CG2 | CB | CG3 | HG31 | 61.0° | 180.0° |
| CG2 | CB | CG3 | HG32 | 59.0° | 60.0° |
| CG2 | CB | CG3 | HG33 | 179.0° | 60.0° |
| CG3 | CB | CG1 | OD1 | 56.4° | 60.0° |
| CG3 | CB | CG1 | OD2 | 120.7° | 120.0° |
| CG3 | CB | CG2 | HG21 | 61.1° | 60.0° |
| CG3 | CB | CG2 | HG22 | 178.9° | 60.0° |
| CG3 | CB | CG2 | HG23 | 58.9° | 180.0° |
| CB | CG3 | HG31 | HG32 | 120.0° | 120.0° |
| CB | CG3 | HG31 | HG33 | 120.0° | 120.0° |
| CB | CG3 | HG32 | HG33 | 120.0° | 120.0° |
| OD2 | CG1 | OD1 | HD1 | 0.0° | 0.0° |
| HG21 | CG2 | HG22 | HG23 | 120.0° | 120.0° |
| HG31 | CG3 | HG32 | HG33 | 120.0° | 120.0° |
| O | C | OXT | HXT | 90.0° | 0.0° |
