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DM9

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.36Å1.41ÅAromatic
C1C15sing1.41Å1.39ÅAromatic
C1H1sing1.08Å1.10Å
C2C3sing1.39Å1.41ÅAromatic
C2H2sing1.08Å1.10Å
C3C4doub1.36Å1.40ÅAromatic
C3H3sing1.08Å1.10Å
C4O4sing1.36Å1.38Å
C4C16sing1.41Å1.41ÅAromatic
O4C21sing1.43Å1.51Å
C5O5sing1.36Å1.36Å
C5C16doub1.40Å1.43ÅAromatic
C5C17sing1.40Å1.46ÅAromatic
O5HO5sing0.97Å0.95Å
C6O6sing1.36Å1.40Å
C6C17doub1.41Å1.43ÅAromatic
C6C20sing1.37Å1.43ÅAromatic
O6HO6sing0.97Å0.95Å
C7O7sing1.43Å1.53Å
C7C8sing1.53Å1.52Å
C7C20sing1.51Å1.49Å
C7H7sing1.09Å1.12Å
O7C1'sing1.43Å1.50Å
C8C9sing1.53Å1.58Å
C8H81sing1.09Å1.12Å
C8H82sing1.09Å1.12Å
C9O9sing1.43Å1.44Å
C9C10sing1.53Å1.56Å
C9C13sing1.51Å1.50Å
O9HO9sing0.97Å0.95Å
C10C19sing1.51Å1.51Å
C10H101sing1.09Å1.12Å
C10H102sing1.09Å1.12Å
C11O11sing1.36Å1.37Å
C11C18doub1.41Å1.39ÅAromatic
C11C19sing1.37Å1.41ÅAromatic
O11HO11sing0.97Å0.95Å
C12O12sing1.36Å1.31Å
C12C15doub1.40Å1.43ÅAromatic
C12C18sing1.40Å1.41ÅAromatic
O12HO12sing0.97Å0.95Å
C13O13doub1.21Å1.31Å
C13C14sing1.51Å1.52Å
C14H141sing1.09Å1.12Å
C14H142sing1.09Å1.11Å
C14H143sing1.09Å1.11Å
C15C16sing1.47Å1.39ÅAromatic
C17C18sing1.46Å1.42ÅAromatic
C19C20doub1.39Å1.38ÅAromatic
C21H211sing1.09Å1.11Å
C21H212sing1.09Å1.11Å
C21H213sing1.09Å1.11Å
C1'C2'sing1.53Å1.51Å
C1'O5'sing1.43Å1.43Å
C1'H1'sing1.09Å1.11Å
C2'C3'sing1.53Å1.55Å
C2'H2'1sing1.09Å1.11Å
C2'H2'2sing1.09Å1.11Å
C3'C4'sing1.53Å1.54Å
C3'N3'sing1.47Å1.48Å
C3'H3'sing1.09Å1.12Å
C4'O4'sing1.43Å1.50Å
C4'C5'sing1.53Å1.57Å
C4'H4'sing1.09Å1.11Å
O4'HO4'sing0.97Å0.95Å
C5'O5'sing1.43Å1.49Å
C5'C6'sing1.53Å1.54Å
C5'H5'sing1.09Å1.11Å
C6'H6'1sing1.09Å1.12Å
C6'H6'2sing1.09Å1.11Å
C6'H6'3sing1.09Å1.11Å
N3'C31sing1.47Å1.49Å
N3'C41sing1.47Å1.53Å
C31O31sing1.43Å1.51Å
C31H311sing1.09Å1.11Å
C31H312sing1.09Å1.12Å
O31HO31sing0.97Å0.95Å
C41C42sing1.53Å1.54Å
C41H411sing1.09Å1.12Å
C41H412sing1.09Å1.12Å
C42O42sing1.43Å1.54Å
C42H421sing1.09Å1.11Å
C42H422sing1.09Å1.11Å
O42C43sing1.43Å1.51Å
C43H431sing1.09Å1.12Å
C43H432sing1.09Å1.12Å
C43H433sing1.09Å1.12Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C15120.0°119.7°
C2C1H1120.7°120.1°
C1C2C3121.2°121.8°
C1C2H2119.1°119.1°
C15C1H1119.3°120.2°
C1C15C12116.4°121.0°
C1C15C16120.0°118.8°
C3C2H2119.6°119.1°
C2C3C4117.3°121.6°
C2C3H3121.9°119.2°
C4C3H3120.7°119.2°
C3C4O4117.1°120.3°
C3C4C16121.7°119.5°
O4C4C16121.2°120.2°
C4O4C21120.6°106.7°
C4C16C5123.2°121.1°
C4C16C15119.8°118.7°
O4C21H211120.5°109.5°
O4C21H212108.2°109.5°
O4C21H213108.2°109.5°
O5C5C16120.1°120.2°
O5C5C17118.1°120.2°
C5O5HO5120.1°106.8°
C16C5C17121.8°119.6°
C5C16C15116.9°120.2°
C5C17C6123.0°121.3°
C5C17C18118.3°120.2°
O6C6C17120.0°119.8°
O6C6C20119.3°119.7°
C6O6HO6120.0°106.8°
C17C6C20120.6°120.5°
C6C17C18118.7°118.4°
C6C20C7117.3°116.7°
C6C20C19118.7°121.1°
O7C7C8110.6°109.2°
O7C7C20101.4°109.2°
O7C7H7116.7°109.2°
C7O7C1'119.8°106.8°
C8C7C20116.4°110.7°
C8C7H7101.6°109.2°
C7C8C9109.7°108.4°
C7C8H81112.1°109.7°
C7C8H82112.2°109.6°
C20C7H7110.8°109.3°
C7C20C19124.0°122.3°
O7C1'C2'108.5°109.4°
O7C1'O5'106.0°109.4°
O7C1'H1'116.4°109.5°
C9C8H81112.1°109.7°
C9C8H82112.1°109.7°
C8C9O9113.3°109.8°
C8C9C10113.6°108.3°
C8C9C13106.3°109.7°
H81C8H8298.2°109.7°
O9C9C10108.1°109.7°
O9C9C13102.3°109.7°
C9O9HO9113.3°106.9°
C10C9C13112.8°109.7°
C9C10C19110.3°110.7°
C9C10H101111.9°109.3°
C9C10H102111.9°109.2°
C9C13O13117.3°120.0°
C9C13C14120.9°120.0°
C19C10H101111.9°109.3°
C19C10H102111.9°109.2°
C10C19C11116.6°116.6°
C10C19C20122.5°122.3°
H101C10H10298.5°109.1°
O11C11C18123.5°119.7°
O11C11C19115.2°119.8°
C11O11HO11123.5°106.8°
C18C11C19121.3°120.5°
C11C18C12119.8°121.3°
C11C18C17119.7°118.4°
C11C19C20120.9°121.1°
O12C12C15121.6°120.2°
O12C12C18119.6°120.2°
C12O12HO12121.6°106.8°
C15C12C18118.8°119.6°
C12C15C16123.7°120.2°
C12C18C17120.5°120.2°
O13C13C14121.8°120.0°
C13C14H141120.9°109.5°
C13C14H142108.1°109.5°
C13C14H143108.1°109.5°
H141C14H142108.1°109.4°
H141C14H143108.2°109.5°
H142C14H143101.8°109.4°
H211C21H212108.3°109.4°
H211C21H213108.3°109.4°
H212C21H213101.7°109.5°
C2'C1'O5'119.3°109.7°
C2'C1'H1'102.3°109.4°
C1'C2'C3'108.6°109.0°
C1'C2'H2'1112.5°109.5°
C1'C2'H2'2112.5°109.5°
O5'C1'H1'104.8°109.4°
C1'O5'C5'113.0°107.6°
C3'C2'H2'1112.6°109.5°
C3'C2'H2'2112.5°109.6°
C2'C3'C4'114.9°108.8°
C2'C3'N3'114.7°109.6°
C2'C3'H3'105.3°109.6°
H2'1C2'H2'298.0°109.6°
C4'C3'N3'118.3°109.5°
C4'C3'H3'99.8°109.6°
C3'C4'O4'102.6°109.5°
C3'C4'C5'110.4°108.9°
C3'C4'H4'112.3°109.8°
N3'C3'H3'100.2°109.6°
C3'N3'C31111.7°106.7°
C3'N3'C41113.4°106.7°
O4'C4'C5'106.4°109.5°
O4'C4'H4'115.9°109.6°
C4'O4'HO4'102.6°106.8°
C5'C4'H4'108.8°109.5°
C4'C5'O5'110.1°109.9°
C4'C5'C6'111.2°109.3°
C4'C5'H5'108.2°109.3°
O5'C5'C6'110.5°109.4°
O5'C5'H5'109.0°109.4°
C6'C5'H5'107.8°109.4°
C5'C6'H6'1111.2°109.5°
C5'C6'H6'2111.6°109.5°
C5'C6'H6'3111.6°109.5°
H6'1C6'H6'2111.5°109.5°
H6'1C6'H6'3111.5°109.4°
H6'2C6'H6'398.8°109.5°
C31N3'C41114.0°106.7°
N3'C31O31110.2°109.5°
N3'C31H311111.9°109.5°
N3'C31H312111.9°109.5°
N3'C41C42111.6°109.5°
N3'C41H411111.4°109.5°
N3'C41H412111.4°109.5°
O31C31H311112.0°109.5°
O31C31H312112.0°109.5°
C31O31HO31110.2°106.8°
H311C31H31298.5°109.4°
C42C41H411111.5°109.4°
C42C41H412111.5°109.5°
C41C42O42109.8°109.5°
C41C42H421112.1°109.5°
C41C42H422112.1°109.5°
H411C41H41298.9°109.5°
O42C42H421112.1°109.5°
O42C42H422112.1°109.5°
C42O42C43123.0°106.8°
H421C42H42298.4°109.4°
O42C43H431123.0°109.4°
O42C43H432107.4°109.4°
O42C43H433107.4°109.5°
H431C43H432107.4°109.5°
H431C43H433107.4°109.5°
H432C43H433102.3°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C15H1180.0°180.0°
C1C2C3H2180.0°180.0°
C1C2C3C40.2°0.0°
C1C2C3H3179.7°179.9°
C2C1C15C12179.8°180.0°
C2C1C15C160.1°0.0°
C15C1C2C30.5°0.0°
C15C1C2H2179.5°179.9°
C1C15C16C40.9°0.0°
C1C15C16C5179.5°180.0°
C1C15C12O120.9°0.0°
C1C15C12C16179.7°179.9°
C1C15C12C18179.1°180.0°
H1C1C2C3179.5°180.0°
H1C1C2H20.5°0.0°
H1C1C15C120.2°0.1°
H1C1C15C16179.9°180.0°
C2C3C4H3180.0°179.9°
C2C3C4O4179.7°180.0°
C2C3C4C160.6°0.0°
H2C2C3C4179.8°179.9°
H2C2C3H30.3°0.0°
C3C4O4C16179.6°180.0°
C3C4O4C210.3°0.0°
C3C4C16C5179.2°180.0°
C3C4C16C151.2°0.0°
H3C3C4O40.2°0.1°
H3C3C4C16179.4°179.9°
O4C4C16C50.4°0.0°
O4C4C16C15179.2°180.0°
C4O4C21H211180.0°180.0°
C4O4C21H21254.7°60.0°
C4O4C21H21354.7°60.0°
C16C4O4C21180.0°180.0°
C4C16C5O50.2°0.0°
C4C16C5C15179.6°180.0°
C4C16C5C17179.8°180.0°
C4C16C15C12179.4°180.0°
O4C21H211H212125.2°120.0°
O4C21H211H213125.3°120.0°
O4C21H212H213113.9°120.1°
O5C5C16C17179.5°179.9°
O5C5C17C60.5°0.2°
O5C5C16C15179.8°179.9°
O5C5C17C18179.4°180.0°
C16C5O5HO5179.9°90.0°
C16C5C17C6179.1°179.9°
C5C16C15C120.2°0.0°
C16C5C17C181.0°0.0°
C17C5O5HO50.5°90.0°
C5C17C6O60.5°0.0°
C5C17C6C18179.9°179.8°
C5C17C6C20179.7°180.0°
C5C17C18C11179.5°179.9°
C5C17C18C120.5°0.1°
C17C5C16C150.6°0.0°
O6C6C17C20179.8°180.0°
O6C6C20C70.0°0.4°
O6C6C17C18179.6°179.8°
O6C6C20C19180.0°180.0°
C17C6O6HO6180.0°87.2°
C17C6C20C7179.8°179.7°
C6C17C18C110.4°0.2°
C6C17C18C12179.5°179.9°
C17C6C20C190.2°0.1°
C20C6O6HO60.3°92.8°
C6C20C7O768.2°42.3°
C6C20C7C8171.7°162.6°
C6C20C7C19180.0°179.6°
C6C20C7H756.3°77.2°
C6C20C19C10179.6°179.8°
C6C20C19C110.4°0.0°
C20C6C17C180.2°0.2°
O7C7C8C20115.0°120.3°
O7C7C8H7124.5°119.4°
O7C7C20H7124.5°119.5°
O7C7C8C980.5°171.8°
O7C7C8H81154.2°68.5°
O7C7C8H8244.8°52.1°
O7C7C20C19111.8°138.1°
C7O7C1'C2'158.3°165.1°
C7O7C1'O5'72.4°74.7°
C7O7C1'H1'43.7°45.2°
C8C7C20H7115.5°120.3°
C8C7O7C1'92.1°98.7°
C7C8C9H81125.3°119.8°
C7C8C9H82125.3°119.6°
C7C8H81H82118.0°120.5°
C7C8C9O968.1°169.9°
C7C8C9C1055.7°70.4°
C7C8C9C13179.7°49.3°
C8C7C20C198.3°17.8°
C20C7O7C1'143.8°140.1°
C20C7C8C934.5°51.5°
C20C7C8H8190.8°171.2°
C20C7C8H82159.8°68.2°
C7C20C19C100.4°0.7°
C7C20C19C11179.6°179.5°
H7C7O7C1'23.4°20.6°
H7C7C8C9155.0°68.9°
H7C7C8H8129.7°50.9°
H7C7C8H8279.7°171.4°
H7C7C20C19123.7°102.4°
O7C1'C2'O5'121.5°120.0°
O7C1'C2'H1'123.5°119.9°
O7C1'O5'H1'123.7°119.9°
O7C1'C2'C3'75.1°58.7°
O7C1'C2'H2'1159.7°61.1°
O7C1'C2'H2'250.2°178.7°
O7C1'O5'C5'69.0°52.4°
C9C8H81H82118.0°120.6°
C8C9O9C10126.8°118.9°
C8C9O9C13114.0°120.6°
C8C9C10C13121.0°119.7°
C8C9O9HO9180.0°180.0°
C8C9C10C1947.9°51.5°
C8C9C10H10177.3°171.8°
C8C9C10H102173.2°68.8°
C8C9C13O1393.4°93.6°
C8C9C13C1487.6°86.4°
H81C8C9O9166.6°50.1°
H81C8C9C1069.6°169.8°
H81C8C9C1355.0°70.5°
H82C8C9O957.2°70.5°
H82C8C9C10179.0°49.2°
H82C8C9C1354.4°168.9°
O9C9C10C13112.4°120.5°
O9C9C10C1978.6°171.2°
O9C9C10H101156.1°68.4°
O9C9C10H10246.6°50.9°
O9C9C13O13147.6°145.8°
O9C9C13C1431.4°34.2°
C10C9O9HO953.3°61.1°
C9C10C19H101125.2°120.4°
C9C10C19H102125.3°120.3°
C9C10H101H102117.8°119.4°
C9C10C19C11159.7°162.3°
C10C9C13O1331.7°25.3°
C10C9C13C14147.3°154.7°
C9C10C19C2020.3°17.8°
C13C9O9HO966.0°59.4°
C13C9C10C19168.9°68.3°
C13C9C10H10143.7°52.1°
C13C9C10H10265.8°171.4°
C9C13O13C14179.0°180.0°
C9C13C14H141179.9°179.9°
C9C13C14H14254.8°60.0°
C9C13C14H14354.8°60.0°
C19C10H101H102117.8°119.4°
C10C19C11O110.5°0.3°
C10C19C11C18179.8°179.8°
C10C19C11C20180.0°179.8°
H101C10C19C1175.0°42.0°
H101C10C19C20104.9°138.2°
H102C10C19C1134.4°77.4°
H102C10C19C20145.6°102.4°
O11C11C18C19179.6°179.9°
O11C11C18C120.1°0.1°
O11C11C18C17179.9°180.0°
O11C11C19C20179.5°179.9°
C18C11O11HO11180.0°90.1°
C11C18C12O120.2°0.1°
C11C18C12C15179.7°179.9°
C11C18C12C17180.0°179.8°
C18C11C19C200.2°0.0°
C19C11O11HO110.4°90.0°
C19C11C18C12179.7°180.0°
C19C11C18C170.3°0.1°
O12C12C15C18180.0°180.0°
O12C12C15C16179.4°180.0°
O12C12C18C17179.8°179.9°
C15C12O12HO12180.0°90.0°
C15C12C18C170.2°0.1°
C18C12O12HO120.0°90.0°
C18C12C15C160.6°0.1°
O13C13C14H1411.1°0.1°
O13C13C14H142126.2°120.0°
O13C13C14H143124.2°120.0°
C13C14H141H142125.2°120.0°
C13C14H141H143125.3°120.1°
C13C14H142H143113.8°120.0°
H141C14H142H143113.8°120.0°
H211C21H212H213113.9°120.0°
C2'C1'O5'H1'113.6°120.0°
C1'C2'C3'H2'1125.2°119.8°
C1'C2'C3'H2'2125.2°119.9°
C1'C2'H2'1H2'2118.4°120.2°
C1'C2'C3'C4'44.9°53.7°
C1'C2'C3'N3'173.0°173.5°
C1'C2'C3'H3'63.9°66.1°
C2'C1'O5'C5'53.7°67.6°
O5'C1'C2'C3'46.4°61.3°
O5'C1'C2'H2'178.9°178.9°
O5'C1'C2'H2'2171.6°58.6°
C1'O5'C5'C4'54.8°67.6°
C1'O5'C5'C6'178.0°172.3°
C1'O5'C5'H5'63.8°52.5°
H1'C1'C2'C3'161.4°178.7°
H1'C1'C2'H2'136.1°58.8°
H1'C1'C2'H2'273.4°61.4°
H1'C1'O5'C5'167.4°172.3°
C3'C2'H2'1H2'2118.5°120.3°
C2'C3'C4'N3'140.6°119.8°
C2'C3'C4'H3'112.1°119.9°
C2'C3'N3'H3'112.2°120.4°
C2'C3'C4'O4'62.0°66.3°
C2'C3'C4'C5'51.1°53.5°
C2'C3'C4'H4'172.8°173.4°
C2'C3'N3'C319.7°176.4°
C2'C3'N3'C41140.2°62.7°
H2'1C2'C3'C4'80.3°173.5°
H2'1C2'C3'N3'61.8°66.7°
H2'1C2'C3'H3'170.9°53.7°
H2'2C2'C3'C4'170.1°66.2°
H2'2C2'C3'N3'47.8°53.6°
H2'2C2'C3'H3'61.3°174.0°
C4'C3'N3'H3'107.0°120.3°
C3'C4'O4'C5'116.0°119.4°
C3'C4'O4'H4'122.8°120.4°
C3'C4'C5'H4'123.7°120.1°
C3'C4'O4'HO4'180.0°179.4°
C3'C4'C5'O5'54.0°61.0°
C3'C4'C5'C6'176.9°178.8°
C3'C4'C5'H5'65.0°59.1°
C4'C3'N3'C31131.0°64.3°
C4'C3'N3'C410.5°178.0°
N3'C3'C4'O4'78.7°53.5°
N3'C3'C4'C5'168.3°173.3°
N3'C3'C4'H4'46.6°66.8°
C3'N3'C31C41130.2°113.7°
C3'N3'C31O31109.7°91.6°
C3'N3'C31H311125.0°148.4°
C3'N3'C31H31215.6°28.4°
C3'N3'C41C42171.3°180.0°
C3'N3'C41H41163.4°60.0°
C3'N3'C41H41246.0°60.0°
H3'C3'C4'O4'174.1°173.8°
H3'C3'C4'C5'61.0°66.4°
H3'C3'C4'H4'60.7°53.5°
H3'C3'N3'C31121.9°56.1°
H3'C3'N3'C41107.6°57.7°
O4'C4'C5'H4'125.6°120.2°
O4'C4'C5'O5'56.6°58.7°
O4'C4'C5'C6'66.2°61.4°
O4'C4'C5'H5'175.6°178.8°
C5'C4'O4'HO4'64.0°60.0°
C4'C5'O5'C6'123.2°120.1°
C4'C5'O5'H5'118.5°120.0°
C4'C5'C6'H5'118.5°119.7°
C4'C5'C6'H6'1180.0°179.5°
C4'C5'C6'H6'254.8°60.4°
C4'C5'C6'H6'354.7°59.6°
H4'C4'O4'HO4'57.2°60.2°
H4'C4'C5'O5'177.8°178.9°
H4'C4'C5'C6'59.4°58.8°
H4'C4'C5'H5'58.8°61.0°
O5'C5'C6'H5'118.9°119.9°
O5'C5'C6'H6'157.4°60.0°
O5'C5'C6'H6'267.8°60.0°
O5'C5'C6'H6'3177.4°180.0°
C5'C6'H6'1H6'2125.3°120.0°
C5'C6'H6'1H6'3125.3°120.0°
C5'C6'H6'2H6'3117.5°120.0°
H5'C5'C6'H6'161.5°59.9°
H5'C5'C6'H6'2173.2°179.9°
H5'C5'C6'H6'363.7°60.1°
H6'1C6'H6'2H6'3117.4°120.0°
N3'C31O31H311125.3°120.0°
N3'C31O31H312125.2°120.0°
N3'C31H311H312117.8°120.0°
N3'C31O31HO31180.0°180.0°
C31N3'C41C4242.0°66.2°
C31N3'C41H411167.3°53.7°
C31N3'C41H41283.3°173.8°
C41N3'C31O31120.1°154.7°
C41N3'C31H3115.2°34.7°
C41N3'C31H312114.6°85.3°
N3'C41C42H411125.3°120.0°
N3'C41C42H412125.3°120.1°
N3'C41H411H412117.3°120.1°
N3'C41C42O42134.3°60.0°
N3'C41C42H4219.1°60.0°
N3'C41C42H422100.4°180.0°
O31C31H311H312117.9°120.0°
H311C31O31HO3154.8°60.0°
H312C31O31HO3154.7°59.9°
C42C41H411H412117.4°120.0°
C41C42O42H421125.2°120.0°
C41C42O42H422125.2°120.0°
C41C42H421H422118.0°120.0°
C41C42O42C4314.3°180.0°
H411C41C42O42100.4°180.0°
H411C41C42H421134.4°59.9°
H411C41C42H42224.9°60.0°
H412C41C42O429.1°60.0°
H412C41C42H421116.2°179.9°
H412C41C42H422134.3°60.0°
O42C42H421H422118.1°120.0°
C42O42C43H431180.0°180.0°
C42O42C43H43254.7°60.1°
C42O42C43H43354.7°60.0°
H421C42O42C43110.9°59.9°
H422C42O42C43139.5°60.0°
O42C43H431H432125.3°119.9°
O42C43H431H433125.3°120.0°
O42C43H432H433112.9°120.1°
H431C43H432H433112.9°120.1°

222415

PDB entries from 2024-07-10

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