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DM6

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.39Å1.40ÅAromatic
C1C15sing1.39Å1.40ÅAromatic
C1H1sing1.08Å1.10Å
C2C3sing1.38Å1.33ÅAromatic
C2H2sing1.08Å1.10Å
C3C4doub1.39Å1.40ÅAromatic
C3H3sing1.08Å1.10Å
C4C16sing1.40Å1.44ÅAromatic
C4O4sing1.36Å1.33Å
C5C16sing1.48Å1.49Å
C5C17sing1.48Å1.46Å
C5O5doub1.22Å1.25Å
C6C17doub1.39Å1.39ÅAromatic
C6C20sing1.40Å1.45ÅAromatic
C6O6sing1.36Å1.35Å
C7C8sing1.53Å1.50Å
C7C20sing1.51Å1.50Å
C7O7sing1.43Å1.45Å
C7H7sing1.09Å1.12Å
C8C9sing1.53Å1.55Å
C8H81sing1.09Å1.12Å
C8H82sing1.09Å1.11Å
C9C10sing1.53Å1.55Å
C9C13sing1.51Å1.56Å
C9O9sing1.43Å1.43Å
C10C19sing1.51Å1.54Å
C10H101sing1.09Å1.11Å
C10H102sing1.09Å1.11Å
C11C18doub1.39Å1.41ÅAromatic
C11C19sing1.40Å1.43ÅAromatic
C11O11sing1.36Å1.35Å
C12C15sing1.48Å1.48Å
C12C18sing1.47Å1.46Å
C12O12doub1.22Å1.24Å
C13C14sing1.51Å1.54Å
C13O13doub1.21Å1.24Å
C14O14sing1.43Å1.43Å
C14H141sing1.09Å1.11Å
C14H142sing1.09Å1.11Å
C15C16doub1.41Å1.37ÅAromatic
C17C18sing1.41Å1.38ÅAromatic
C19C20doub1.37Å1.36ÅAromatic
C21O4sing1.43Å1.47Å
C21H211sing1.09Å1.12Å
C21H212sing1.09Å1.12Å
C21H213sing1.09Å1.11Å
O6HO6sing0.97Å0.95Å
O7C1'sing1.43Å1.42Å
O9HO9sing0.97Å0.95Å
O11HO11sing0.97Å0.95Å
O14HO14sing0.97Å0.95Å
C1'C2'sing1.53Å1.49Å
C1'O5'sing1.43Å1.44Å
C1'H1'sing1.09Å1.12Å
C2'C3'sing1.53Å1.54Å
C2'H2'1sing1.09Å1.12Å
C2'H2'2sing1.09Å1.11Å
C3'C4'sing1.53Å1.50Å
C3'N3'sing1.47Å1.49Å
C3'H3'sing1.09Å1.11Å
C4'C5'sing1.53Å1.50Å
C4'O4'sing1.43Å1.41Å
C4'H4'sing1.09Å1.12Å
C5'C6'sing1.53Å1.55Å
C5'O5'sing1.43Å1.44Å
C5'H5'sing1.09Å1.11Å
C6'H6'1sing1.09Å1.11Å
C6'H6'2sing1.09Å1.12Å
C6'H6'3sing1.09Å1.11Å
O4'HO'4sing0.97Å0.95Å
N3'HN'1sing1.01Å1.02Å
N3'HN'2sing1.01Å1.02Å
N3'HN'3sing1.01Å1.02Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C15117.2°119.9°
C2C1H1121.6°120.1°
C1C2C3123.0°120.6°
C1C2H2121.5°119.7°
C15C1H1121.2°120.0°
C1C15C12115.5°120.6°
C1C15C16122.1°119.8°
C3C2H2115.5°119.7°
C2C3C4120.5°120.4°
C2C3H3117.0°119.8°
C4C3H3122.5°119.8°
C3C4C16118.7°119.7°
C3C4O4124.5°120.2°
C16C4O4116.7°120.1°
C4C16C5121.4°120.6°
C4C16C15118.5°119.6°
C4O4C21119.1°106.8°
C16C5C17116.8°119.1°
C16C5O5122.6°120.4°
C5C16C15120.0°119.7°
C17C5O5120.6°120.4°
C5C17C6117.1°120.8°
C5C17C18123.4°119.7°
C17C6C20120.3°120.5°
C17C6O6123.5°119.8°
C6C17C18119.5°119.4°
C20C6O6115.9°119.7°
C6C20C7117.0°117.3°
C6C20C19120.1°120.1°
C6O6HO6123.5°106.8°
C8C7C20111.0°110.7°
C8C7O7112.0°109.3°
C8C7H7106.3°109.2°
C7C8C9113.2°108.4°
C7C8H81110.8°109.6°
C7C8H82110.9°109.7°
C20C7O7108.5°109.2°
C20C7H7110.0°109.2°
C7C20C19122.8°122.5°
O7C7H7108.9°109.2°
C7O7C1'112.6°106.8°
C9C8H81110.9°109.7°
C9C8H82110.9°109.7°
C8C9C10107.6°108.3°
C8C9C13110.0°109.7°
C8C9O9116.6°109.7°
H81C8H8299.4°109.7°
C10C9C13107.7°109.7°
C10C9O9107.2°109.7°
C9C10C19113.1°110.6°
C9C10H101110.9°109.2°
C9C10H102110.9°109.2°
C13C9O9107.5°109.7°
C9C13C14109.8°120.0°
C9C13O13111.5°120.0°
C9O9HO9116.5°106.8°
C19C10H101110.9°109.2°
C19C10H102110.9°109.3°
C10C19C11117.7°117.3°
C10C19C20122.8°122.6°
H101C10H10299.5°109.2°
C18C11C19119.9°120.5°
C18C11O11122.6°119.8°
C11C18C12119.3°120.9°
C11C18C17120.8°119.4°
C19C11O11117.4°119.8°
C11C19C20119.3°120.1°
C11O11HO11122.6°106.8°
C15C12C18117.5°119.2°
C15C12O12120.8°120.4°
C12C15C16122.4°119.6°
C18C12O12121.4°120.4°
C12C18C17119.9°119.7°
C14C13O13133.4°120.0°
C13C14O14105.0°109.4°
C13C14H141113.9°109.5°
C13C14H142113.9°109.5°
O14C14H141113.9°109.4°
O14C14H142113.9°109.5°
C14O14HO14105.0°106.8°
H141C14H14296.6°109.5°
O4C21H211119.0°109.4°
O4C21H212108.8°109.5°
O4C21H213108.8°109.5°
H211C21H212108.7°109.5°
H211C21H213108.8°109.5°
H212C21H213101.3°109.5°
O7C1'C2'105.2°109.4°
O7C1'O5'110.9°109.4°
O7C1'H1'112.1°109.4°
C2'C1'O5'111.5°109.8°
C2'C1'H1'111.5°109.4°
C1'C2'C3'111.2°109.0°
C1'C2'H2'1111.5°109.5°
C1'C2'H2'2111.6°109.5°
O5'C1'H1'105.9°109.4°
C1'O5'C5'113.5°107.7°
C3'C2'H2'1111.6°109.6°
C3'C2'H2'2111.6°109.6°
C2'C3'C4'110.2°108.7°
C2'C3'N3'106.6°109.6°
C2'C3'H3'110.7°109.6°
H2'1C2'H2'298.8°109.7°
C4'C3'N3'109.2°109.8°
C4'C3'H3'108.3°109.6°
C3'C4'C5'110.7°109.0°
C3'C4'O4'111.6°109.5°
C3'C4'H4'109.3°109.6°
N3'C3'H3'111.8°109.6°
C3'N3'HN'1106.6°109.5°
C3'N3'HN'2113.2°109.4°
C3'N3'HN'3113.3°109.4°
C5'C4'O4'115.0°109.6°
C5'C4'H4'105.4°109.5°
C4'C5'C6'114.4°109.4°
C4'C5'O5'110.4°109.7°
C4'C5'H5'104.6°109.4°
O4'C4'H4'104.4°109.6°
C4'O4'HO'4111.6°106.8°
C6'C5'O5'106.8°109.4°
C6'C5'H5'108.3°109.4°
C5'C6'H6'1114.4°109.5°
C5'C6'H6'2110.4°109.5°
C5'C6'H6'3110.4°109.5°
O5'C5'H5'112.5°109.4°
H6'1C6'H6'2110.3°109.4°
H6'1C6'H6'3110.4°109.4°
H6'2C6'H6'399.8°109.5°
HN'1N3'HN'2113.2°109.5°
HN'1N3'HN'3113.4°109.5°
HN'2N3'HN'397.2°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C15H1180.0°179.9°
C1C2C3H2180.0°179.9°
C1C2C3C42.0°0.0°
C1C2C3H3178.0°180.0°
C2C1C15C12178.8°180.0°
C2C1C15C160.7°0.3°
C15C1C2C31.4°0.0°
C15C1C2H2178.5°180.0°
C1C15C16C40.5°0.5°
C1C15C16C5177.7°179.8°
C1C15C12C16178.1°179.7°
C1C15C12C18177.7°166.2°
C1C15C12O128.9°13.8°
H1C1C2C3178.6°180.0°
H1C1C2H21.5°0.1°
H1C1C15C121.2°0.1°
H1C1C15C16179.3°179.8°
C2C3C4H3180.0°179.9°
C2C3C4C161.7°0.3°
C2C3C4O4177.3°180.0°
H2C2C3C4178.0°180.0°
H2C2C3H32.0°0.1°
C3C4C16O4176.0°179.7°
C3C4C16C5177.2°179.8°
C3C4C16C150.9°0.5°
C3C4O4C218.8°0.1°
H3C3C4C16178.3°179.8°
H3C3C4O42.7°0.1°
C4C16C5C15178.1°179.3°
C4C16C5C17177.8°166.5°
C4C16C5O52.3°13.3°
C4C16C15C12178.5°179.8°
C16C4O4C21166.9°179.7°
O4C4C16C51.2°0.5°
O4C4C16C15176.9°179.8°
C4O4C21H211180.0°180.0°
C4O4C21H21254.8°60.0°
C4O4C21H21354.7°60.0°
C16C5C17O5179.9°179.8°
C16C5C17C6179.1°165.9°
C5C16C15C120.3°0.5°
C16C5C17C180.9°14.0°
C5C17C6C18178.3°179.9°
C5C17C6C20179.6°179.8°
C5C17C6O66.8°0.2°
C5C17C18C11176.8°180.0°
C5C17C18C120.9°0.0°
C17C5C16C150.3°14.3°
O5C5C17C60.7°13.9°
O5C5C16C15179.5°166.0°
O5C5C17C18178.9°166.2°
C17C6C20O6173.3°180.0°
C17C6C20C7172.3°179.7°
C6C17C18C111.3°0.2°
C6C17C18C12179.0°179.9°
C17C6C20C194.2°0.3°
C17C6O6HO6180.0°94.9°
C6C20C7C8165.3°162.5°
C6C20C7C19176.4°179.9°
C6C20C7O771.2°42.1°
C6C20C7H747.8°77.3°
C6C20C19C10176.9°179.5°
C6C20C19C112.6°0.3°
C20C6C17C182.2°0.0°
C20C6O6HO67.0°85.1°
O6C6C20C71.0°0.3°
O6C6C17C18175.0°180.0°
O6C6C20C19177.5°179.8°
C8C7C20O7123.5°120.4°
C8C7C20H7117.4°120.2°
C8C7O7H7117.3°119.4°
C7C8C9H81125.3°119.7°
C7C8C9H82125.3°119.7°
C7C8H81H82116.7°120.5°
C7C8C9C1063.0°69.8°
C7C8C9C13180.0°49.9°
C7C8C9O957.4°170.5°
C8C7C20C1918.3°17.6°
C8C7O7C1'95.5°97.2°
C20C7O7H7119.8°119.4°
C20C7C8C950.2°51.0°
C20C7C8H8175.1°68.8°
C20C7C8H82175.5°170.8°
C7C20C19C100.6°0.6°
C7C20C19C11173.8°179.6°
C20C7O7C1'141.6°141.7°
O7C7C8C971.3°171.3°
O7C7C8H81163.4°51.6°
O7C7C8H8254.0°68.9°
O7C7C20C19105.2°137.9°
C7O7C1'C2'158.5°165.3°
C7O7C1'O5'80.9°74.4°
C7O7C1'H1'37.2°45.4°
H7C7C8C9169.8°69.2°
H7C7C8H8144.5°171.0°
H7C7C8H8264.9°50.5°
H7C7C20C19135.7°102.6°
H7C7O7C1'21.9°22.2°
C9C8H81H82116.7°120.6°
C8C9C10C13118.5°119.7°
C8C9C10O9126.1°119.8°
C8C9C13O9127.8°120.6°
C8C9C10C1942.4°51.1°
C8C9C10H10182.8°69.2°
C8C9C10H102167.6°171.4°
C8C9C13C14125.6°85.3°
C8C9C13O1376.6°94.6°
C8C9O9HO9180.0°178.8°
H81C8C9C1062.2°49.9°
H81C8C9C1354.8°169.6°
H81C8C9O9177.4°69.8°
H82C8C9C10171.7°170.5°
H82C8C9C1354.7°69.8°
H82C8C9O967.9°50.7°
C10C9C13O9115.2°120.5°
C9C10C19H101125.2°120.3°
C9C10C19H102125.3°120.3°
C9C10H101H102116.8°119.4°
C9C10C19C11160.4°162.4°
C10C9C13C14117.4°155.8°
C10C9C13O1340.4°24.2°
C9C10C19C2014.0°17.8°
C10C9O9HO959.4°60.0°
C13C9C10C19160.9°68.6°
C13C9C10H10135.6°171.1°
C13C9C10H10273.9°51.7°
C9C13C14O13151.1°179.9°
C9C13C14O14155.6°179.9°
C9C13C14H14130.4°60.0°
C9C13C14H14279.1°60.0°
C13C9O9HO956.1°60.6°
O9C9C10C1983.7°170.9°
O9C9C10H101151.0°50.6°
O9C9C10H10241.5°68.8°
O9C9C13C142.2°35.3°
O9C9C13O13155.6°144.8°
C19C10H101H102116.7°119.5°
C10C19C11C18173.7°179.7°
C10C19C11C20174.6°179.8°
C10C19C11O119.3°0.2°
H101C10C19C1174.3°77.3°
H101C10C19C20111.2°102.5°
H102C10C19C1135.2°42.1°
H102C10C19C20139.3°138.1°
C18C11C19O11177.0°179.9°
C11C18C12C15177.5°166.3°
C11C18C12C17177.7°179.9°
C11C18C12O124.2°13.7°
C18C11C19C200.9°0.1°
C18C11O11HO11179.9°90.0°
C19C11C18C12179.4°179.9°
C19C11C18C173.0°0.1°
C19C11O11HO113.1°90.0°
O11C11C18C123.8°0.1°
O11C11C18C17173.8°179.8°
O11C11C19C20176.0°180.0°
C15C12C18O12173.4°179.9°
C15C12C18C170.2°13.8°
C18C12C15C160.4°13.5°
O12C12C15C16173.0°166.5°
O12C12C18C17173.5°166.3°
C13C14O14H141125.2°120.0°
C13C14O14H142125.2°120.0°
C13C14H141H142119.8°120.1°
C13C14O14HO14180.0°180.0°
O13C13C14O1453.3°0.0°
O13C13C14H141178.5°119.9°
O13C13C14H14271.9°120.0°
O14C14H141H142119.8°120.0°
H141C14O14HO1454.7°60.1°
H142C14O14HO1454.8°59.9°
O4C21H211H212125.2°120.0°
O4C21H211H213125.3°120.0°
O4C21H212H213114.5°120.0°
H211C21H212H213114.5°120.0°
O7C1'C2'O5'120.2°120.1°
O7C1'C2'H1'121.7°119.8°
O7C1'O5'H1'121.8°119.8°
O7C1'C2'C3'67.5°58.9°
O7C1'C2'H2'1167.3°178.7°
O7C1'C2'H2'257.9°61.0°
O7C1'O5'C5'59.5°52.5°
C2'C1'O5'H1'121.4°120.1°
C1'C2'C3'H2'1125.2°119.8°
C1'C2'C3'H2'2125.3°119.8°
C1'C2'H2'1H2'2117.5°120.2°
C1'C2'C3'C4'51.9°53.7°
C1'C2'C3'N3'170.3°173.6°
C1'C2'C3'H3'67.8°66.0°
C2'C1'O5'C5'57.3°67.6°
O5'C1'C2'C3'52.8°61.2°
O5'C1'C2'H2'172.5°58.6°
O5'C1'C2'H2'2178.1°178.9°
C1'O5'C5'C4'58.9°67.6°
C1'O5'C5'C6'176.2°172.3°
C1'O5'C5'H5'57.5°52.4°
H1'C1'C2'C3'170.9°178.7°
H1'C1'C2'H2'145.6°61.4°
H1'C1'C2'H2'263.8°58.8°
H1'C1'O5'C5'178.7°172.3°
C3'C2'H2'1H2'2117.5°120.3°
C2'C3'C4'N3'116.8°119.8°
C2'C3'C4'H3'121.2°119.7°
C2'C3'N3'H3'121.1°120.3°
C2'C3'C4'C5'53.8°53.8°
C2'C3'C4'O4'176.8°173.7°
C2'C3'C4'H4'61.9°66.1°
C2'C3'N3'HN'1179.9°60.0°
C2'C3'N3'HN'254.7°180.0°
C2'C3'N3'HN'354.7°60.0°
H2'1C2'C3'C4'73.3°66.1°
H2'1C2'C3'N3'45.1°53.8°
H2'1C2'C3'H3'167.0°174.2°
H2'2C2'C3'C4'177.3°173.5°
H2'2C2'C3'N3'64.4°66.5°
H2'2C2'C3'H3'57.5°53.8°
C4'C3'N3'H3'119.8°120.4°
C3'C4'C5'O4'127.6°119.9°
C3'C4'C5'H4'118.0°119.9°
C3'C4'O4'H4'117.9°120.2°
C3'C4'C5'C6'177.4°178.7°
C3'C4'C5'O5'57.0°61.3°
C3'C4'C5'H5'64.2°58.8°
C3'C4'O4'HO'4180.0°180.0°
C4'C3'N3'HN'160.9°179.2°
C4'C3'N3'HN'264.3°60.7°
C4'C3'N3'HN'3173.8°59.2°
N3'C3'C4'C5'170.6°173.6°
N3'C3'C4'O4'60.0°66.5°
N3'C3'C4'H4'54.9°53.7°
C3'N3'HN'1HN'2125.2°120.0°
C3'N3'HN'1HN'3125.3°120.0°
C3'N3'HN'2HN'3119.2°119.9°
H3'C3'C4'C5'67.5°66.0°
H3'C3'C4'O4'61.9°53.9°
H3'C3'C4'H4'176.9°174.2°
H3'C3'N3'HN'158.9°60.4°
H3'C3'N3'HN'2175.9°59.7°
H3'C3'N3'HN'366.5°179.6°
C5'C4'O4'H4'114.9°120.2°
C4'C5'C6'O5'122.5°120.2°
C4'C5'C6'H5'116.2°119.9°
C4'C5'O5'H5'116.4°120.1°
C4'C5'C6'H6'1179.9°60.0°
C4'C5'C6'H6'254.8°180.0°
C4'C5'C6'H6'354.7°59.9°
C5'C4'O4'HO'452.9°60.4°
O4'C4'C5'C6'55.0°58.8°
O4'C4'C5'O5'175.5°178.9°
O4'C4'C5'H5'63.3°61.1°
H4'C4'C5'C6'59.4°61.4°
H4'C4'C5'O5'61.1°58.6°
H4'C4'C5'H5'177.7°178.7°
H4'C4'O4'HO'462.0°59.8°
C6'C5'O5'H5'118.7°119.9°
C5'C6'H6'1H6'2125.2°120.0°
C5'C6'H6'1H6'3125.4°120.0°
C5'C6'H6'2H6'3116.3°120.1°
O5'C5'C6'H6'157.5°179.7°
O5'C5'C6'H6'267.7°59.7°
O5'C5'C6'H6'3177.2°60.3°
H5'C5'C6'H6'163.9°59.9°
H5'C5'C6'H6'2170.9°60.1°
H5'C5'C6'H6'361.5°179.9°
H6'1C6'H6'2H6'3116.3°119.9°
HN'1N3'HN'2HN'3119.3°120.1°

222926

PDB entries from 2024-07-24

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