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DM5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.38Å1.34ÅAromatic
C1C20sing1.39Å1.41ÅAromatic
C1H1sing1.08Å1.10Å
C2C3sing1.38Å1.31ÅAromatic
C2H2sing1.08Å1.10Å
C3C4doub1.38Å1.34ÅAromatic
C3H3sing1.08Å1.10Å
C4C5sing1.39Å1.41ÅAromatic
C4H4sing1.08Å1.10Å
C5C6sing1.48Å1.54Å
C5C20doub1.41Å1.40ÅAromatic
C6O6doub1.22Å1.20Å
C6C7sing1.47Å1.50Å
C7C8doub1.39Å1.40ÅAromatic
C7C18sing1.41Å1.35ÅAromatic
C8O8sing1.36Å1.37Å
C8C9sing1.40Å1.42ÅAromatic
O8HO8sing0.97Å0.95Å
C9C10sing1.51Å1.50Å
C9C16doub1.37Å1.39ÅAromatic
C10O10sing1.43Å1.40Å
C10C11sing1.53Å1.51Å
C10H10sing1.09Å1.12Å
O10C1'sing1.43Å1.48Å
C11C12sing1.53Å1.56Å
C11H111sing1.09Å1.12Å
C11H112sing1.09Å1.12Å
C12O12sing1.43Å1.42Å
C12C13sing1.51Å1.52Å
C12C15sing1.53Å1.52Å
O12HO12sing0.97Å0.95Å
C13O13doub1.21Å1.28Å
C13C14sing1.51Å1.44Å
C14H141sing1.09Å1.11Å
C14H142sing1.09Å1.12Å
C14H143sing1.09Å1.11Å
C15C16sing1.51Å1.49Å
C15H151sing1.09Å1.12Å
C15H152sing1.09Å1.11Å
C16C17sing1.40Å1.45ÅAromatic
C17O17sing1.36Å1.41Å
C17C18doub1.39Å1.39ÅAromatic
O17HO17sing0.97Å0.95Å
C18C19sing1.47Å1.43Å
C19O19doub1.22Å1.27Å
C19C20sing1.48Å1.43Å
C1'C2'sing1.53Å1.55Å
C1'O5'sing1.43Å1.44Å
C1'H1'sing1.09Å1.12Å
C2'C3'sing1.53Å1.56Å
C2'H2'1sing1.09Å1.12Å
C2'H2'2sing1.09Å1.11Å
C3'N3'sing1.47Å1.48Å
C3'C4'sing1.53Å1.53Å
C3'H3'sing1.09Å1.11Å
N3'HN'1sing1.01Å1.02Å
N3'HN'2sing1.01Å1.02Å
C4'O4'sing1.43Å1.52Å
C4'C5'sing1.53Å1.44Å
C4'H4'sing1.09Å1.11Å
O4'HO4'sing0.97Å0.95Å
C5'O5'sing1.43Å1.42Å
C5'C6'sing1.53Å1.42Å
C5'H5'sing1.09Å1.11Å
C6'H6'1sing1.09Å1.12Å
C6'H6'2sing1.09Å1.12Å
C6'H6'3sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C20119.0°119.8°
C2C1H1118.1°120.1°
C1C2C3120.7°120.5°
C1C2H2121.1°119.8°
C20C1H1123.0°120.1°
C1C20C5118.2°119.7°
C1C20C19120.4°120.6°
C3C2H2118.2°119.8°
C2C3C4126.0°120.5°
C2C3H3115.7°119.8°
C4C3H3118.3°119.7°
C3C4C5115.8°119.8°
C3C4H4119.7°120.1°
C5C4H4124.5°120.1°
C4C5C6120.8°120.6°
C4C5C20120.2°119.7°
C6C5C20119.0°119.7°
C5C6O6122.5°120.4°
C5C6C7115.3°119.2°
C5C20C19121.4°119.6°
O6C6C7122.2°120.4°
C6C7C8115.9°120.9°
C6C7C18122.2°119.7°
C8C7C18121.9°119.4°
C7C8O8123.7°119.7°
C7C8C9119.7°120.5°
C7C18C17119.9°119.4°
C7C18C19121.6°119.7°
O8C8C9116.5°119.8°
C8O8HO8123.8°106.8°
C8C9C10119.0°117.3°
C8C9C16119.1°120.2°
C10C9C16121.5°122.6°
C9C10O10104.5°109.3°
C9C10C11111.0°110.6°
C9C10H10115.1°109.2°
C9C16C15122.3°122.6°
C9C16C17118.8°120.1°
O10C10C11117.7°109.3°
O10C10H10107.9°109.2°
C10O10C1'126.2°106.8°
C11C10H10101.0°109.2°
C10C11C12113.0°108.3°
C10C11H111110.9°109.8°
C10C11H112110.9°109.7°
O10C1'C2'113.1°109.3°
O10C1'O5'106.1°109.5°
O10C1'H1'111.0°109.4°
C12C11H111110.9°109.7°
C12C11H112110.9°109.7°
C11C12O12115.7°109.7°
C11C12C13106.0°109.7°
C11C12C15104.9°108.3°
H111C11H11299.4°109.7°
O12C12C13113.2°109.7°
O12C12C15111.6°109.7°
C12O12HO12115.6°106.8°
C13C12C15104.6°109.7°
C12C13O13127.0°120.0°
C12C13C14118.5°120.0°
C12C15C16113.7°110.7°
C12C15H151110.6°109.2°
C12C15H152110.7°109.2°
O13C13C14113.7°120.0°
C13C14H141118.5°109.4°
C13C14H142108.9°109.5°
C13C14H143109.0°109.5°
H141C14H142108.9°109.5°
H141C14H143109.0°109.5°
H142C14H143101.1°109.5°
C16C15H151110.6°109.3°
C16C15H152110.7°109.3°
C15C16C17118.7°117.3°
H151C15H15299.7°109.2°
C16C17O17119.2°119.8°
C16C17C18120.6°120.4°
O17C17C18119.7°119.8°
C17O17HO17119.1°106.8°
C17C18C19118.5°120.9°
C18C19O19123.9°120.4°
C18C19C20120.5°119.2°
O19C19C20115.5°120.4°
C2'C1'O5'113.9°109.8°
C2'C1'H1'102.6°109.4°
C1'C2'C3'108.6°109.0°
C1'C2'H2'1112.5°109.5°
C1'C2'H2'2112.5°109.5°
O5'C1'H1'110.1°109.5°
C1'O5'C5'115.2°107.6°
C3'C2'H2'1112.5°109.6°
C3'C2'H2'2112.6°109.6°
C2'C3'N3'106.4°109.6°
C2'C3'C4'113.1°108.6°
C2'C3'H3'123.6°109.6°
H2'1C2'H2'297.9°109.6°
N3'C3'C4'130.7°109.7°
N3'C3'H3'96.3°109.6°
C3'N3'HN'1106.4°106.7°
C3'N3'HN'2113.3°106.7°
C4'C3'H3'85.6°109.7°
C3'C4'O4'97.6°109.6°
C3'C4'C5'107.6°109.0°
C3'C4'H4'119.6°109.5°
HN'1N3'HN'2113.4°106.7°
O4'C4'C5'114.1°109.8°
O4'C4'H4'113.6°109.5°
C4'O4'HO4'97.6°106.9°
C5'C4'H4'104.6°109.5°
C4'C5'O5'112.8°109.8°
C4'C5'C6'105.2°109.4°
C4'C5'H5'111.8°109.4°
O5'C5'C6'113.9°109.4°
O5'C5'H5'102.6°109.4°
C6'C5'H5'110.7°109.4°
C5'C6'H6'1105.2°109.5°
C5'C6'H6'2113.8°109.6°
C5'C6'H6'3113.8°109.5°
H6'1C6'H6'2113.8°109.4°
H6'1C6'H6'3113.8°109.4°
H6'2C6'H6'396.6°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C20H1180.0°180.0°
C1C2C3H2180.0°180.0°
C1C2C3C40.3°0.0°
C1C2C3H3179.7°179.9°
C2C1C20C51.1°0.0°
C2C1C20C19178.9°179.9°
C20C1C2C32.1°0.0°
C20C1C2H2177.9°180.0°
C1C20C5C41.5°0.0°
C1C20C5C6180.0°179.9°
C1C20C5C19180.0°180.0°
C1C20C19C18179.9°166.1°
C1C20C19O191.9°13.9°
H1C1C2C3177.9°180.0°
H1C1C2H22.1°0.0°
H1C1C20C5178.9°180.0°
H1C1C20C191.1°0.0°
C2C3C4H3180.0°179.9°
C2C3C4C52.3°0.0°
C2C3C4H4177.6°179.9°
H2C2C3C4179.7°180.0°
H2C2C3H30.3°0.1°
C3C4C5H4180.0°179.9°
C3C4C5C6178.4°179.9°
C3C4C5C203.1°0.1°
H3C3C4C5177.7°179.9°
H3C3C4H42.4°0.0°
C4C5C6C20178.5°179.9°
C4C5C6O60.9°13.8°
C4C5C6C7178.9°166.2°
C4C5C20C19178.4°180.0°
H4C4C5C61.7°0.2°
H4C4C5C20176.8°179.9°
C5C6O6C7177.8°180.0°
C5C6C7C8179.7°166.3°
C5C6C7C180.9°13.7°
C6C5C20C190.1°0.1°
C20C5C6O6177.6°166.2°
C20C5C6C70.4°13.7°
C5C20C19C180.1°13.9°
C5C20C19O19178.0°166.1°
O6C6C7C81.8°13.7°
O6C6C7C18177.0°166.2°
C6C7C8C18178.8°179.9°
C6C7C8O83.4°0.1°
C6C7C8C9178.8°179.9°
C6C7C18C17179.6°179.9°
C6C7C18C190.9°0.0°
C7C8O8C9177.9°180.0°
C7C8O8HO8180.0°84.7°
C7C8C9C10172.4°179.7°
C7C8C9C160.3°0.0°
C8C7C18C170.9°0.2°
C8C7C18C19179.7°179.9°
C18C7C8O8177.8°179.8°
C18C7C8C90.0°0.2°
C7C18C17C161.6°0.0°
C7C18C17O17173.0°179.9°
C7C18C17C19179.5°179.9°
C7C18C19O19178.4°166.1°
C7C18C19C200.4°13.8°
O8C8C9C105.5°0.3°
O8C8C9C16177.7°180.0°
C9C8O8HO82.1°95.4°
C8C9C10C16172.0°179.7°
C8C9C10O1060.6°42.1°
C8C9C10C11171.5°162.5°
C8C9C10H1057.6°77.3°
C8C9C16C15176.1°179.7°
C8C9C16C170.4°0.2°
C9C10O10C11123.6°121.2°
C9C10O10H10122.9°119.4°
C9C10C11H10122.5°120.2°
C9C10O10C1'147.9°130.7°
C9C10C11C1248.5°51.1°
C9C10C11H11176.8°170.8°
C9C10C11H112173.8°68.5°
C10C9C16C154.1°0.6°
C10C9C16C17171.6°179.5°
C16C9C10O10111.4°138.2°
C16C9C10C1116.5°17.8°
C16C9C10H10130.4°102.4°
C9C16C15C1223.3°17.7°
C9C16C15C17175.7°179.8°
C9C16C15H151101.9°138.0°
C9C16C15H152148.5°102.6°
C9C16C17O17172.8°179.9°
C9C16C17C181.3°0.2°
O10C10C11H10117.2°119.4°
O10C10C11C1271.8°171.5°
O10C10C11H111162.9°68.8°
O10C10C11H11253.4°51.8°
C10O10C1'C2'141.8°166.1°
C10O10C1'O5'92.6°73.6°
C10O10C1'H1'27.0°46.4°
C11C10O10C1'88.5°108.2°
C10C11C12H111125.2°119.8°
C10C11C12H112125.2°119.7°
C10C11H111H112116.7°120.6°
C10C11C12O1257.5°170.6°
C10C11C12C13176.2°50.0°
C10C11C12C1566.0°69.7°
H10C10O10C1'24.9°11.2°
H10C10C11C12171.0°69.1°
H10C10C11H11145.7°50.6°
H10C10C11H11263.7°171.2°
O10C1'C2'O5'121.2°120.1°
O10C1'C2'H1'119.7°119.8°
O10C1'O5'H1'120.2°119.9°
O10C1'C2'C3'78.4°58.9°
O10C1'C2'H2'1156.4°178.7°
O10C1'C2'H2'247.0°61.0°
O10C1'O5'C5'75.5°52.5°
C12C11H111H112116.8°120.5°
C11C12O12C13122.6°120.6°
C11C12O12C15119.8°118.9°
C11C12C13C15110.5°118.8°
C11C12O12HO12180.0°180.0°
C11C12C13O1381.2°95.5°
C11C12C13C1488.3°84.6°
C11C12C15C1650.6°51.0°
C11C12C15H15174.6°171.3°
C11C12C15H152175.9°69.3°
H111C11C12O12177.3°50.8°
H111C11C12C1351.0°69.8°
H111C11C12C1559.3°170.5°
H112C11C12O1267.8°69.7°
H112C11C12C1358.5°169.6°
H112C11C12C15168.8°50.0°
O12C12C13C15121.7°120.6°
O12C12C13O13151.1°143.9°
O12C12C13C1439.4°36.0°
O12C12C15C1675.3°170.7°
O12C12C15H151159.4°68.9°
O12C12C15H15249.9°50.4°
C13C12O12HO1257.4°59.4°
C12C13O13C14169.9°179.9°
C12C13C14H141179.9°180.0°
C12C13C14H14254.8°60.0°
C12C13C14H14354.7°60.0°
C13C12C15C16162.0°68.7°
C13C12C15H15136.7°51.7°
C13C12C15H15272.8°171.0°
C15C12O12HO1260.2°61.2°
C15C12C13O1329.4°23.3°
C15C12C13C14161.1°156.6°
C12C15C16H151125.2°120.3°
C12C15C16H152125.3°120.2°
C12C15H151H152116.5°119.3°
C12C15C16C17152.4°162.5°
O13C13C14H1419.1°0.1°
O13C13C14H142116.1°120.0°
O13C13C14H143134.5°119.9°
C13C14H141H142125.2°120.0°
C13C14H141H143125.4°120.0°
C13C14H142H143114.7°120.0°
H141C14H142H143114.7°120.0°
C16C15H151H152116.6°119.5°
C15C16C17O1711.4°0.3°
C15C16C17C18177.1°179.7°
H151C15C16C1782.4°42.2°
H152C15C16C1727.1°77.3°
C16C17O17C18171.6°179.9°
C16C17O17HO17179.9°90.0°
C16C17C18C19179.0°179.9°
O17C17C18C197.5°0.0°
C18C17O17HO178.4°90.0°
C17C18C19O192.2°13.9°
C17C18C19C20179.9°166.1°
C18C19O19C20178.1°180.0°
C2'C1'O5'H1'114.7°120.1°
C1'C2'C3'H2'1125.3°119.8°
C1'C2'C3'H2'2125.3°119.8°
C1'C2'H2'1H2'2118.4°120.2°
C1'C2'C3'N3'162.2°173.6°
C1'C2'C3'C4'47.9°53.8°
C1'C2'C3'H3'52.7°66.1°
C2'C1'O5'C5'49.5°67.6°
O5'C1'C2'C3'42.9°61.3°
O5'C1'C2'H2'182.4°58.6°
O5'C1'C2'H2'2168.2°178.9°
C1'O5'C5'C4'59.7°67.6°
C1'O5'C5'C6'179.5°172.3°
C1'O5'C5'H5'60.8°52.4°
H1'C1'C2'C3'161.9°178.6°
H1'C1'C2'H2'136.6°61.5°
H1'C1'C2'H2'272.8°58.7°
H1'C1'O5'C5'164.2°172.3°
C3'C2'H2'1H2'2118.5°120.3°
C2'C3'N3'C4'142.6°119.2°
C2'C3'N3'H3'127.8°120.3°
C2'C3'C4'H3'124.8°119.7°
C2'C3'N3'HN'1180.0°60.0°
C2'C3'N3'HN'254.7°173.8°
C2'C3'C4'O4'61.4°66.3°
C2'C3'C4'C5'56.9°53.9°
C2'C3'C4'H4'175.9°173.6°
H2'1C2'C3'N3'72.5°53.8°
H2'1C2'C3'C4'77.4°66.1°
H2'1C2'C3'H3'178.0°174.1°
H2'2C2'C3'N3'36.9°66.5°
H2'2C2'C3'C4'173.1°173.6°
H2'2C2'C3'H3'72.6°53.8°
N3'C3'C4'H3'94.6°120.5°
C3'N3'HN'1HN'2125.3°113.7°
N3'C3'C4'O4'79.3°53.5°
N3'C3'C4'C5'162.4°173.6°
N3'C3'C4'H4'43.4°66.7°
C4'C3'N3'HN'137.4°179.2°
C4'C3'N3'HN'2162.7°67.1°
C3'C4'O4'C5'113.2°119.6°
C3'C4'O4'H4'127.0°120.1°
C3'C4'C5'H4'128.2°119.7°
C3'C4'O4'HO4'180.0°179.9°
C3'C4'C5'O5'61.0°61.4°
C3'C4'C5'C6'174.2°178.6°
C3'C4'C5'H5'54.0°58.7°
H3'C3'N3'HN'152.2°60.3°
H3'C3'N3'HN'273.1°53.5°
H3'C3'C4'O4'173.9°174.0°
H3'C3'C4'C5'67.8°65.9°
H3'C3'C4'H4'51.1°53.8°
O4'C4'C5'H4'124.8°120.3°
O4'C4'C5'O5'46.0°58.6°
O4'C4'C5'C6'78.7°61.4°
O4'C4'C5'H5'161.1°178.7°
C5'C4'O4'HO4'66.8°60.3°
C4'C5'O5'C6'119.8°120.0°
C4'C5'O5'H5'120.5°120.1°
C4'C5'C6'H5'120.9°119.9°
C4'C5'C6'H6'1180.0°179.9°
C4'C5'C6'H6'254.7°60.1°
C4'C5'C6'H6'354.7°59.9°
H4'C4'O4'HO4'53.0°59.9°
H4'C4'C5'O5'170.8°178.9°
H4'C4'C5'C6'46.1°58.8°
H4'C4'C5'H5'74.1°61.1°
O5'C5'C6'H5'115.0°119.8°
O5'C5'C6'H6'155.9°59.8°
O5'C5'C6'H6'269.3°60.1°
O5'C5'C6'H6'3178.8°179.9°
C5'C6'H6'1H6'2125.3°120.1°
C5'C6'H6'1H6'3125.3°120.0°
C5'C6'H6'2H6'3119.8°120.1°
H5'C5'C6'H6'159.1°60.0°
H5'C5'C6'H6'2175.7°180.0°
H5'C5'C6'H6'366.2°60.0°
H6'1C6'H6'2H6'3119.7°119.9°

222624

PDB entries from 2024-07-17

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