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DM4

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.39Å1.44ÅAromatic
C1C20sing1.39Å1.36ÅAromatic
C1H1sing1.08Å1.08Å
C2C3sing1.38Å1.45ÅAromatic
C2H2sing1.08Å1.08Å
C3C4doub1.39Å1.45ÅAromatic
C3H3sing1.08Å1.08Å
C4O4sing1.36Å1.33Å
C4C5sing1.40Å1.41ÅAromatic
O4HO4sing0.97Å0.95Å
C5C6sing1.47Å1.48Å
C5C20doub1.41Å1.40ÅAromatic
C6O6doub1.22Å1.25Å
C6C7sing1.48Å1.47Å
C7C8doub1.39Å1.37ÅAromatic
C7C18sing1.41Å1.47ÅAromatic
C8O8sing1.36Å1.31Å
C8C9sing1.40Å1.40ÅAromatic
O8HO8sing0.97Å0.95Å
C9C10sing1.51Å1.58Å
C9C16doub1.37Å1.38ÅAromatic
C10O10sing1.43Å1.44Å
C10C11sing1.53Å1.44Å
C10H10sing1.09Å1.10Å
O10C1'sing1.43Å1.39Å
C11C12sing1.53Å1.51Å
C11H111sing1.09Å1.10Å
C11H112sing1.09Å1.10Å
C12O12sing1.43Å1.48Å
C12C13sing1.51Å1.52Å
C12C15sing1.53Å1.62Å
O12HO12sing0.97Å0.95Å
C13O13doub1.21Å1.28Å
C13C14sing1.51Å1.57Å
C14O14sing1.43Å1.55Å
C14H141sing1.09Å1.10Å
C14H142sing1.09Å1.10Å
O14HO14sing0.97Å0.95Å
C15C16sing1.51Å1.44Å
C15H151sing1.09Å1.10Å
C15H152sing1.09Å1.10Å
C16C17sing1.39Å1.36ÅAromatic
C17C18doub1.39Å1.38ÅAromatic
C17H17sing1.08Å1.08Å
C18C19sing1.48Å1.43Å
C19O19doub1.22Å1.24Å
C19C20sing1.48Å1.42Å
C1'C2'sing1.53Å1.51Å
C1'O5'sing1.43Å1.49Å
C1'H1'sing1.09Å1.10Å
C2'C3'sing1.53Å1.55Å
C2'H2'1sing1.09Å1.10Å
C2'H2'2sing1.09Å1.10Å
C3'N3'sing1.47Å1.53Å
C3'C4'sing1.53Å1.56Å
C3'H3'sing1.09Å1.10Å
N3'HN'1sing1.01Å1.00Å
N3'HN'2sing1.01Å1.00Å
C4'O4'sing1.43Å1.45Å
C4'C5'sing1.53Å1.53Å
C4'H4'sing1.09Å1.10Å
O4'HO4'sing0.97Å0.95Å
C5'O5'sing1.43Å1.54Å
C5'C6'sing1.53Å1.58Å
C5'H5'sing1.09Å1.10Å
C6'H6'1sing1.09Å1.10Å
C6'H6'2sing1.09Å1.10Å
C6'H6'3sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C20117.4°120.0°
C2C1H1121.3°120.0°
C1C2C3121.1°120.6°
C1C2H2119.4°119.7°
C20C1H1121.3°120.0°
C1C20C5122.9°119.8°
C1C20C19113.2°120.6°
C3C2H2119.4°119.7°
C2C3C4119.4°120.4°
C2C3H3120.3°119.8°
C4C3H3120.3°119.8°
C3C4O4124.2°120.2°
C3C4C5116.2°119.7°
O4C4C5119.5°120.2°
C4O4HO4109.5°106.8°
C4C5C6118.4°120.7°
C4C5C20123.0°119.6°
C6C5C20118.6°119.8°
C5C6O6126.9°120.4°
C5C6C7119.1°119.3°
C5C20C19123.9°119.6°
O6C6C7114.0°120.3°
C6C7C8119.7°120.9°
C6C7C18119.1°119.7°
C8C7C18121.1°119.4°
C7C8O8121.9°119.9°
C7C8C9117.3°120.2°
C7C18C17115.1°119.5°
C7C18C19119.8°119.6°
O8C8C9120.9°119.9°
C8O8HO8109.5°106.8°
C8C9C10117.7°117.3°
C8C9C16124.6°120.0°
C10C9C16117.5°122.6°
C9C10O1097.0°109.3°
C9C10C11117.5°110.6°
C9C10H10114.5°109.2°
C9C16C15127.7°122.5°
C9C16C17116.0°120.2°
O10C10C11114.3°109.3°
O10C10H10117.7°109.3°
C10O10C1'126.9°106.8°
C11C10H1097.2°109.2°
C10C11C12118.4°108.4°
C10C11H111104.5°109.7°
C10C11H112106.6°109.7°
O10C1'C2'112.5°109.4°
O10C1'O5'105.9°109.4°
O10C1'H1'110.8°109.5°
C12C11H111104.5°109.7°
C12C11H112106.6°109.7°
C11C12O12109.2°109.7°
C11C12C13111.9°109.7°
C11C12C15113.4°108.3°
H111C11H112116.8°109.7°
O12C12C13107.8°109.7°
O12C12C15103.4°109.7°
C12O12HO12109.5°106.8°
C13C12C15110.7°109.7°
C12C13O13115.9°120.1°
C12C13C14128.9°120.0°
C12C15C16112.7°110.7°
C12C15H151107.7°109.3°
C12C15H152108.4°109.2°
O13C13C14110.1°120.0°
C13C14O14139.0°109.5°
C13C14H14194.0°109.5°
C13C14H142100.6°109.5°
O14C14H14194.0°109.4°
O14C14H142100.6°109.5°
C14O14HO14109.5°106.8°
H141C14H142136.8°109.4°
C16C15H151107.7°109.3°
C16C15H152108.4°109.3°
C15C16C17116.2°117.4°
H151C15H152112.0°109.1°
C16C17C18125.8°120.7°
C16C17H17117.1°119.6°
C18C17H17117.1°119.7°
C17C18C19125.1°120.9°
C18C19O19125.3°120.4°
C18C19C20119.4°119.1°
O19C19C20115.1°120.5°
C2'C1'O5'112.1°109.8°
C2'C1'H1'104.4°109.4°
C1'C2'C3'109.3°109.0°
C1'C2'H2'1109.6°109.6°
C1'C2'H2'2109.5°109.5°
O5'C1'H1'111.2°109.4°
C1'O5'C5'109.3°107.5°
C3'C2'H2'1109.5°109.5°
C3'C2'H2'2109.5°109.5°
C2'C3'N3'107.9°109.6°
C2'C3'C4'109.6°108.6°
C2'C3'H3'110.5°109.6°
H2'1C2'H2'2109.3°109.7°
N3'C3'C4'109.8°109.7°
N3'C3'H3'110.4°109.6°
C3'N3'HN'1109.5°106.7°
C3'N3'HN'2109.5°106.7°
C4'C3'H3'108.6°109.7°
C3'C4'O4'102.1°109.6°
C3'C4'C5'110.5°109.0°
C3'C4'H4'115.0°109.6°
HN'1N3'HN'2109.5°106.7°
O4'C4'C5'113.5°109.7°
O4'C4'H4'112.1°109.6°
C4'O4'HO4'109.5°106.8°
C5'C4'H4'104.0°109.4°
C4'C5'O5'106.9°109.8°
C4'C5'C6'116.2°109.4°
C4'C5'H5'104.8°109.5°
O5'C5'C6'102.4°109.4°
O5'C5'H5'118.0°109.4°
C6'C5'H5'109.1°109.4°
C5'C6'H6'1109.4°109.5°
C5'C6'H6'2109.5°109.4°
C5'C6'H6'3109.5°109.5°
H6'1C6'H6'2109.5°109.5°
H6'1C6'H6'3109.5°109.5°
H6'2C6'H6'3109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C20H1180.0°179.9°
C1C2C3H2180.0°180.0°
C1C2C3C40.2°0.0°
C1C2C3H3179.8°180.0°
C2C1C20C51.4°0.0°
C2C1C20C19179.9°180.0°
C20C1C2C30.5°0.0°
C20C1C2H2179.5°180.0°
C1C20C5C41.6°0.1°
C1C20C5C6180.0°179.9°
C1C20C5C19178.4°179.9°
C1C20C19C18178.1°166.1°
C1C20C19O191.8°13.9°
H1C1C2C3179.5°179.9°
H1C1C2H20.6°0.1°
H1C1C20C5178.6°180.0°
H1C1C20C190.1°0.1°
C2C3C4H3180.0°180.0°
C2C3C4O4175.6°180.0°
C2C3C4C50.1°0.0°
H2C2C3C4179.8°180.0°
H2C2C3H30.2°0.0°
C3C4O4C5175.3°180.0°
C3C4O4HO491.1°90.0°
C3C4C5C6179.2°179.9°
C3C4C5C200.7°0.1°
H3C3C4O44.4°0.0°
H3C3C4C5179.9°180.0°
O4C4C5C63.5°0.1°
O4C4C5C20175.0°179.9°
C5C4O4HO493.5°90.0°
C4C5C6C20178.5°180.0°
C4C5C6O61.8°13.8°
C4C5C6C7179.9°166.2°
C4C5C20C19179.9°180.0°
C5C6O6C7178.5°180.0°
C5C6C7C8178.7°166.3°
C5C6C7C180.9°13.8°
C6C5C20C191.6°0.0°
C20C5C6O6179.7°166.2°
C20C5C6C71.3°13.8°
C5C20C19C180.4°13.8°
C5C20C19O19176.7°166.2°
O6C6C7C80.1°13.7°
O6C6C7C18177.7°166.2°
C6C7C8C18177.7°179.8°
C6C7C8O80.4°0.0°
C6C7C8C9178.8°179.8°
C6C7C18C17176.7°179.9°
C6C7C18C192.9°0.0°
C7C8O8C9179.2°179.8°
C7C8O8HO891.1°84.7°
C7C8C9C10178.8°179.8°
C7C8C9C162.9°0.1°
C8C7C18C171.0°0.2°
C8C7C18C19179.3°179.9°
C18C7C8O8178.2°179.8°
C18C7C8C91.1°0.3°
C7C18C17C161.6°0.0°
C7C18C17C19179.6°179.9°
C7C18C17H17178.4°180.0°
C7C18C19O19178.6°166.2°
C7C18C19C202.7°13.8°
O8C8C9C100.4°0.3°
O8C8C9C16176.3°180.0°
C9C8O8HO888.1°95.1°
C8C9C10C16176.2°179.7°
C8C9C10O1061.5°42.3°
C8C9C10C11176.4°162.6°
C8C9C10H1063.2°77.2°
C8C9C16C15178.9°179.8°
C8C9C16C172.4°0.2°
C9C10O10C11124.5°121.1°
C9C10O10H10122.4°119.5°
C9C10C11H10122.5°120.2°
C9C10O10C1'151.7°142.6°
C9C10C11C1224.4°51.1°
C9C10C11H111140.2°170.9°
C9C10C11H11295.6°68.6°
C10C9C16C155.2°0.6°
C10C9C16C17178.3°179.5°
C16C9C10O10122.2°138.0°
C16C9C10C110.1°17.7°
C16C9C10H10113.0°102.5°
C9C16C15C1212.7°17.6°
C9C16C15C17176.5°179.9°
C9C16C15H151131.3°138.0°
C9C16C15H152107.3°102.7°
C9C16C17C180.0°0.2°
C9C16C17H17180.0°179.8°
O10C10C11H10124.8°119.5°
O10C10C11C1288.3°171.5°
O10C10C11H11127.5°68.8°
O10C10C11H112151.7°51.8°
C10O10C1'C2'151.4°165.6°
C10O10C1'O5'85.7°74.0°
C10O10C1'H1'34.9°45.8°
C11C10O10C1'83.7°96.3°
C10C11C12H111115.7°119.8°
C10C11C12H112120.0°119.7°
C10C11H111H112117.4°120.5°
C10C11C12O1272.8°170.4°
C10C11C12C13167.9°49.9°
C10C11C12C1541.9°69.9°
H10C10O10C1'29.4°23.1°
H10C10C11C12146.9°69.1°
H10C10C11H11197.4°50.7°
H10C10C11H11226.9°171.2°
O10C1'C2'O5'119.3°120.1°
O10C1'C2'H1'120.2°119.9°
O10C1'O5'H1'120.4°119.9°
O10C1'C2'C3'61.3°58.8°
O10C1'C2'H2'158.8°178.7°
O10C1'C2'H2'2178.7°61.0°
O10C1'O5'C5'60.5°52.5°
C12C11H111H112117.5°120.5°
C11C12O12C13121.8°120.6°
C11C12O12C15121.0°118.9°
C11C12C13C15127.5°118.9°
C11C12O12HO1228.0°180.0°
C11C12C13O13112.0°93.1°
C11C12C13C1496.1°86.9°
C11C12C15C1635.0°51.1°
C11C12C15H151153.7°171.4°
C11C12C15H15284.9°69.3°
H111C11C12O1242.9°50.7°
H111C11C12C1376.4°69.9°
H111C11C12C15157.6°170.4°
H112C11C12O12167.2°69.9°
H112C11C12C1347.9°169.6°
H112C11C12C1578.2°49.8°
O12C12C13C15112.4°120.5°
O12C12C13O13127.9°146.4°
O12C12C13C1424.0°33.7°
O12C12C15C1683.0°170.8°
O12C12C15H15135.6°68.9°
O12C12C15H152157.0°50.5°
C13C12O12HO12149.8°59.5°
C12C13O13C14157.1°180.0°
C12C13C14O14152.0°180.0°
C12C13C14H141107.1°60.0°
C12C13C14H14232.0°60.0°
C13C12C15C16161.7°68.7°
C13C12C15H15179.7°51.7°
C13C12C15H15241.8°171.0°
C15C12O12HO1292.9°61.1°
C15C12C13O1315.5°25.8°
C15C12C13C14136.4°154.2°
C12C15C16H151118.6°120.3°
C12C15C16H152120.0°120.3°
C12C15H151H152119.1°119.4°
C12C15C16C17163.8°162.4°
O13C13C14O1454.8°0.0°
O13C13C14H14146.1°120.0°
O13C13C14H142174.8°120.1°
C13C14O14H141100.9°120.0°
C13C14O14H142120.0°120.0°
C13C14H141H142110.1°120.0°
C13C14O14HO147.0°180.0°
O14C14H141H142110.1°120.0°
H141C14O14HO1493.9°59.9°
H142C14O14HO14127.0°60.0°
C16C15H151H152119.1°119.4°
C15C16C17C18176.9°179.7°
C15C16C17H173.1°0.2°
H151C15C16C1745.2°42.1°
H152C15C16C1776.2°77.3°
C16C17C18H17180.0°179.9°
C16C17C18C19178.8°179.9°
C17C18C19O191.0°13.9°
C17C18C19C20176.9°166.1°
H17C17C18C191.2°0.1°
C18C19O19C20176.1°180.0°
C2'C1'O5'H1'116.5°120.0°
C1'C2'C3'H2'1120.1°119.9°
C1'C2'C3'H2'2120.0°119.8°
C1'C2'H2'1H2'2120.0°120.3°
C1'C2'C3'N3'174.0°173.7°
C1'C2'C3'C4'54.5°53.8°
C1'C2'C3'H3'65.2°66.0°
C2'C1'O5'C5'62.6°67.6°
O5'C1'C2'C3'58.0°61.3°
O5'C1'C2'H2'1178.1°58.5°
O5'C1'C2'H2'262.0°178.9°
C1'O5'C5'C4'62.5°67.7°
C1'O5'C5'C6'174.9°172.3°
C1'O5'C5'H5'55.1°52.5°
H1'C1'C2'C3'178.5°178.7°
H1'C1'C2'H2'161.4°61.5°
H1'C1'C2'H2'258.5°58.9°
H1'C1'O5'C5'179.1°172.3°
C3'C2'H2'1H2'2120.0°120.2°
C2'C3'N3'C4'119.4°119.2°
C2'C3'N3'H3'120.8°120.3°
C2'C3'C4'H3'120.8°119.7°
C2'C3'N3'HN'1135.2°60.0°
C2'C3'N3'HN'215.2°173.8°
C2'C3'C4'O4'62.7°66.2°
C2'C3'C4'C5'58.3°53.8°
C2'C3'C4'H4'175.6°173.5°
H2'1C2'C3'N3'65.9°53.8°
H2'1C2'C3'C4'174.6°66.1°
H2'1C2'C3'H3'54.9°174.1°
H2'2C2'C3'N3'54.0°66.5°
H2'2C2'C3'C4'65.5°173.6°
H2'2C2'C3'H3'174.8°53.8°
N3'C3'C4'H3'120.8°120.5°
C3'N3'HN'1HN'2120.0°113.8°
N3'C3'C4'O4'55.6°53.6°
N3'C3'C4'C5'176.6°173.6°
N3'C3'C4'H4'66.0°66.6°
C4'C3'N3'HN'1105.4°179.2°
C4'C3'N3'HN'2134.6°67.0°
C3'C4'O4'C5'118.9°119.6°
C3'C4'O4'H4'123.7°120.2°
C3'C4'C5'H4'123.9°119.8°
C3'C4'O4'HO4'78.5°180.0°
C3'C4'C5'O5'61.1°61.4°
C3'C4'C5'C6'174.6°178.6°
C3'C4'C5'H5'64.9°58.7°
H3'C3'N3'HN'114.4°60.3°
H3'C3'N3'HN'2105.7°53.5°
H3'C3'C4'O4'176.4°174.1°
H3'C3'C4'C5'62.6°65.9°
H3'C3'C4'H4'54.7°53.8°
O4'C4'C5'H4'122.1°120.2°
O4'C4'C5'O5'52.9°58.6°
O4'C4'C5'C6'60.6°61.5°
O4'C4'C5'H5'178.9°178.7°
C5'C4'O4'HO4'40.4°60.4°
C4'C5'O5'C6'122.6°120.1°
C4'C5'O5'H5'117.6°120.1°
C4'C5'C6'H5'118.1°119.9°
C4'C5'C6'H6'198.6°60.1°
C4'C5'C6'H6'221.5°59.9°
C4'C5'C6'H6'3141.5°179.9°
H4'C4'O4'HO4'157.8°59.7°
H4'C4'C5'O5'175.0°178.8°
H4'C4'C5'C6'61.4°58.8°
H4'C4'C5'H5'59.0°61.1°
O5'C5'C6'H5'125.8°119.8°
O5'C5'C6'H6'1145.3°60.1°
O5'C5'C6'H6'294.6°179.9°
O5'C5'C6'H6'325.4°59.8°
C5'C6'H6'1H6'2120.0°120.0°
C5'C6'H6'1H6'3120.0°120.0°
C5'C6'H6'2H6'3120.0°120.0°
H5'C5'C6'H6'119.5°180.0°
H5'C5'C6'H6'2139.6°60.0°
H5'C5'C6'H6'3100.4°60.0°
H6'1C6'H6'2H6'3120.0°120.0°

222415

PDB entries from 2024-07-10

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