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DM3

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.39Å1.43ÅAromatic
C1C20sing1.39Å1.39ÅAromatic
C1H1sing1.08Å1.10Å
C2C3sing1.38Å1.38ÅAromatic
C2H2sing1.08Å1.10Å
C3C4doub1.39Å1.38ÅAromatic
C3H3sing1.08Å1.10Å
C4O4sing1.36Å1.40Å
C4C5sing1.40Å1.42ÅAromatic
O4C21sing1.43Å1.44Å
C5C6sing1.48Å1.38Å
C5C20doub1.41Å1.35ÅAromatic
C6O6doub1.22Å1.38Å
C6C7sing1.48Å1.41Å
C7C8doub1.39Å1.38ÅAromatic
C7C18sing1.41Å1.35ÅAromatic
C8O8sing1.36Å1.39Å
C8C9sing1.40Å1.42ÅAromatic
O8HO8sing0.97Å0.95Å
C9C10sing1.51Å1.51Å
C9C16doub1.38Å1.37ÅAromatic
C10O10sing1.43Å1.50Å
C10C11sing1.53Å1.52Å
C10H10sing1.09Å1.12Å
O10C1'sing1.43Å1.43Å
C11C12sing1.53Å1.48Å
C11H111sing1.09Å1.11Å
C11H112sing1.09Å1.12Å
C12O12sing1.43Å1.52Å
C12C13sing1.51Å1.54Å
C12C15sing1.53Å1.50Å
O12HO12sing0.97Å0.95Å
C13O13doub1.21Å1.36Å
C13C14sing1.51Å1.50Å
C14H141sing1.09Å1.11Å
C14H142sing1.09Å1.12Å
C14H143sing1.09Å1.11Å
C15C16sing1.51Å1.50Å
C15H151sing1.09Å1.11Å
C15H152sing1.09Å1.12Å
C16C17sing1.39Å1.40ÅAromatic
C17C18doub1.39Å1.41ÅAromatic
C17H17sing1.08Å1.10Å
C18C19sing1.48Å1.41Å
C19O19doub1.22Å1.32Å
C19C20sing1.48Å1.40Å
C21H211sing1.09Å1.12Å
C21H212sing1.09Å1.11Å
C21H213sing1.09Å1.12Å
C1'C2'sing1.53Å1.53Å
C1'O5'sing1.43Å1.45Å
C1'H1'sing1.09Å1.12Å
C2'C3'sing1.53Å1.51Å
C2'H2'1sing1.09Å1.12Å
C2'H2'2sing1.09Å1.12Å
C3'N3'sing1.47Å1.52Å
C3'C4'sing1.53Å1.57Å
C3'H3'sing1.09Å1.11Å
N3'HN'1sing1.01Å1.02Å
N3'HN'2sing1.01Å1.02Å
C4'O4'sing1.43Å1.44Å
C4'C5'sing1.53Å1.52Å
C4'H4'sing1.09Å1.11Å
O4'HO4'sing0.97Å0.95Å
C5'O5'sing1.42Å1.52Å
C5'C6'sing1.53Å1.51Å
C5'H5'sing1.09Å1.11Å
C6'H6'1sing1.09Å1.11Å
C6'H6'2sing1.09Å1.12Å
C6'H6'3sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C20117.3°119.9°
C2C1H1122.5°120.1°
C1C2C3121.6°120.6°
C1C2H2121.1°119.7°
C20C1H1120.1°120.0°
C1C20C5121.8°119.8°
C1C20C19115.5°120.6°
C3C2H2117.3°119.7°
C2C3C4118.5°120.4°
C2C3H3120.9°119.8°
C4C3H3120.6°119.8°
C3C4O4120.0°120.2°
C3C4C5121.1°119.6°
O4C4C5118.8°120.2°
C4O4C21114.9°106.8°
C4C5C6123.0°120.6°
C4C5C20119.6°119.6°
O4C21H211114.9°109.4°
O4C21H212110.3°109.5°
O4C21H213110.3°109.5°
C6C5C20117.3°119.8°
C5C6O6115.5°120.4°
C5C6C7121.6°119.2°
C5C20C19122.8°119.6°
O6C6C7122.9°120.4°
C6C7C8123.1°120.9°
C6C7C18120.6°119.7°
C8C7C18116.3°119.4°
C7C8O8125.6°119.8°
C7C8C9117.7°120.3°
C7C18C17128.0°119.5°
C7C18C19118.5°119.7°
O8C8C9116.7°119.9°
C8O8HO8125.7°106.8°
C8C9C10112.5°117.4°
C8C9C16124.8°120.1°
C10C9C16122.7°122.6°
C9C10O10102.0°109.3°
C9C10C11110.3°110.7°
C9C10H10114.8°109.2°
C9C16C15126.4°122.5°
C9C16C17118.1°120.1°
O10C10C11112.5°109.2°
O10C10H10112.6°109.2°
C10O10C1'124.3°106.9°
C11C10H10104.8°109.2°
C10C11C12117.5°108.3°
C10C11H111109.3°109.7°
C10C11H112109.3°109.7°
O10C1'C2'110.4°109.5°
O10C1'O5'114.3°109.4°
O10C1'H1'105.8°109.4°
C12C11H111109.3°109.7°
C12C11H112109.3°109.7°
C11C12O12103.4°109.7°
C11C12C13118.3°109.7°
C11C12C15115.5°108.3°
H111C11H112100.9°109.7°
O12C12C1398.7°109.7°
O12C12C15108.9°109.7°
C12O12HO12103.4°106.8°
C13C12C15110.0°109.7°
C12C13O13113.4°120.0°
C12C13C14120.7°120.0°
C12C15C16109.2°110.6°
C12C15H151112.3°109.2°
C12C15H152112.3°109.2°
O13C13C14125.4°120.0°
C13C14H141120.7°109.5°
C13C14H142108.2°109.5°
C13C14H143108.2°109.5°
H141C14H142108.2°109.5°
H141C14H143108.2°109.5°
H142C14H143101.7°109.5°
C16C15H151112.3°109.3°
C16C15H152112.2°109.3°
C15C16C17115.4°117.4°
H151C15H15298.2°109.2°
C16C17C18115.1°120.7°
C16C17H17121.9°119.7°
C18C17H17123.0°119.7°
C17C18C19113.5°120.9°
C18C19O19122.5°120.4°
C18C19C20119.1°119.1°
O19C19C20118.4°120.5°
H211C21H212110.2°109.4°
H211C21H213110.1°109.5°
H212C21H213100.0°109.5°
C2'C1'O5'110.4°109.8°
C2'C1'H1'110.0°109.4°
C1'C2'C3'108.7°109.0°
C1'C2'H2'1112.5°109.5°
C1'C2'H2'2112.5°109.5°
O5'C1'H1'105.7°109.4°
C1'O5'C5'116.6°107.7°
C3'C2'H2'1112.5°109.6°
C3'C2'H2'2112.5°109.6°
C2'C3'N3'102.0°109.6°
C2'C3'C4'116.6°108.7°
C2'C3'H3'109.2°109.6°
H2'1C2'H2'297.9°109.6°
N3'C3'C4'107.4°109.8°
N3'C3'H3'118.1°109.6°
C3'N3'HN'1102.1°106.7°
C3'N3'HN'2115.1°106.7°
C4'C3'H3'104.1°109.6°
C3'C4'O4'107.0°109.5°
C3'C4'C5'107.9°109.0°
C3'C4'H4'112.2°109.6°
HN'1N3'HN'2115.0°106.7°
O4'C4'C5'110.0°109.7°
O4'C4'H4'110.2°109.6°
C4'O4'HO4'107.1°106.8°
C5'C4'H4'109.4°109.5°
C4'C5'O5'106.3°109.7°
C4'C5'C6'114.7°109.5°
C4'C5'H5'108.9°109.4°
O5'C5'C6'111.6°109.4°
O5'C5'H5'112.2°109.4°
C6'C5'H5'103.2°109.4°
C5'C6'H6'1114.7°109.5°
C5'C6'H6'2110.3°109.5°
C5'C6'H6'3110.3°109.5°
H6'1C6'H6'2110.3°109.5°
H6'1C6'H6'3110.3°109.4°
H6'2C6'H6'3100.0°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C20H1180.0°180.0°
C1C2C3H2180.0°179.9°
C1C2C3C41.3°0.1°
C1C2C3H3178.7°180.0°
C2C1C20C50.4°0.3°
C2C1C20C19179.5°180.0°
C20C1C2C30.2°0.1°
C20C1C2H2179.8°179.9°
C1C20C5C41.6°0.6°
C1C20C5C6178.3°179.7°
C1C20C5C19179.9°179.7°
C1C20C19C18179.2°166.3°
C1C20C19O190.7°13.8°
H1C1C2C3179.8°180.0°
H1C1C2H20.2°0.1°
H1C1C20C5179.6°179.7°
H1C1C20C190.5°0.1°
C2C3C4H3180.0°179.9°
C2C3C4O4179.5°179.9°
C2C3C4C52.6°0.4°
H2C2C3C4178.7°180.0°
H2C2C3H31.4°0.1°
C3C4O4C5177.9°179.7°
C3C4O4C212.5°0.0°
C3C4C5C6179.2°179.8°
C3C4C5C202.8°0.6°
H3C3C4O40.5°0.0°
H3C3C4C5177.4°179.7°
O4C4C5C62.8°0.5°
O4C4C5C20179.3°179.7°
C4O4C21H211180.0°179.9°
C4O4C21H21254.7°60.0°
C4O4C21H21354.8°60.0°
C5C4O4C21179.6°179.7°
C4C5C6C20176.5°179.1°
C4C5C6O63.3°13.3°
C4C5C6C7178.8°166.5°
C4C5C20C19178.3°179.7°
O4C21H211H212125.4°120.0°
O4C21H211H213125.3°120.0°
O4C21H212H213116.1°120.0°
C5C6O6C7177.8°179.8°
C5C6C7C8179.9°165.9°
C5C6C7C182.1°14.0°
C6C5C20C191.6°0.6°
C20C5C6O6179.8°165.8°
C20C5C6C72.3°14.3°
C5C20C19C180.7°13.4°
C5C20C19O19179.2°166.6°
O6C6C7C82.2°13.9°
O6C6C7C18179.8°166.1°
C6C7C8C18178.1°180.0°
C6C7C8O80.1°0.1°
C6C7C8C9179.1°179.8°
C6C7C18C17179.1°179.9°
C6C7C18C191.0°0.0°
C7C8O8C9179.0°179.9°
C7C8O8HO8180.0°93.0°
C7C8C9C10179.8°179.6°
C7C8C9C161.7°0.3°
C8C7C18C172.7°0.1°
C8C7C18C19179.2°179.9°
C18C7C8O8178.2°180.0°
C18C7C8C92.8°0.1°
C7C18C17C161.1°0.2°
C7C18C17C19178.2°180.0°
C7C18C17H17178.9°179.9°
C7C18C19O19178.8°166.3°
C7C18C19C200.3°13.7°
O8C8C9C101.1°0.3°
O8C8C9C16179.2°179.8°
C9C8O8HO81.0°86.9°
C8C9C10C16178.1°179.9°
C8C9C10O1068.2°42.1°
C8C9C10C11172.0°162.5°
C8C9C10H1053.9°77.3°
C8C9C16C15179.4°179.5°
C8C9C16C170.1°0.2°
C9C10O10C11118.2°121.2°
C9C10O10H10123.6°119.4°
C9C10C11H10124.1°120.2°
C9C10O10C1'150.4°127.7°
C9C10C11C1234.7°51.0°
C9C10C11H11190.6°68.7°
C9C10C11H112159.9°170.7°
C10C9C16C151.5°0.6°
C10C9C16C17178.0°179.7°
C16C9C10O10109.9°137.9°
C16C9C10C119.8°17.6°
C16C9C10H10128.0°102.7°
C9C16C15C1215.6°17.8°
C9C16C15C17179.5°179.7°
C9C16C15H151109.6°102.5°
C9C16C15H152140.9°138.1°
C9C16C17C180.3°0.0°
C9C16C17H17179.7°180.0°
O10C10C11H10122.7°119.4°
O10C10C11C1278.5°171.4°
O10C10C11H111156.2°51.7°
O10C10C11H11246.7°68.9°
C10O10C1'C2'166.8°167.6°
C10O10C1'O5'68.0°72.1°
C10O10C1'H1'47.9°47.7°
C11C10O10C1'91.4°111.0°
C10C11C12H111125.2°119.7°
C10C11C12H112125.2°119.8°
C10C11H111H112115.1°120.6°
C10C11C12O1266.3°170.5°
C10C11C12C13174.0°49.8°
C10C11C12C1552.6°69.8°
H10C10O10C1'26.8°8.3°
H10C10C11C12158.8°69.3°
H10C10C11H11133.5°171.1°
H10C10C11H11276.0°50.5°
O10C1'C2'O5'127.4°120.1°
O10C1'C2'H1'116.3°119.8°
O10C1'O5'H1'115.9°119.8°
O10C1'C2'C3'77.1°58.9°
O10C1'C2'H2'1157.6°178.7°
O10C1'C2'H2'248.2°61.0°
O10C1'O5'C5'65.0°52.5°
C12C11H111H112115.1°120.5°
C11C12O12C13122.0°120.6°
C11C12O12C15123.3°118.8°
C11C12C13C15135.8°118.8°
C11C12O12HO12180.0°178.9°
C11C12C13O13110.7°94.6°
C11C12C13C1477.2°85.4°
C11C12C15C1639.3°51.2°
C11C12C15H15185.9°69.1°
C11C12C15H152164.5°171.5°
H111C11C12O12168.5°69.9°
H111C11C12C1360.7°169.5°
H111C11C12C1572.6°49.8°
H112C11C12O1259.0°50.7°
H112C11C12C1348.8°69.9°
H112C11C12C15177.8°170.4°
O12C12C13C15113.9°120.6°
O12C12C13O13138.9°144.8°
O12C12C13C1433.2°35.2°
O12C12C15C1676.4°170.9°
O12C12C15H151158.4°50.6°
O12C12C15H15248.8°68.8°
C13C12O12HO1258.0°60.5°
C12C13O13C14171.7°180.0°
C12C13C14H141180.0°180.0°
C12C13C14H14254.7°60.0°
C12C13C14H14354.7°60.0°
C13C12C15C16176.4°68.5°
C13C12C15H15151.2°171.1°
C13C12C15H15258.4°51.8°
C15C12O12HO1256.6°60.0°
C15C12C13O1325.0°24.3°
C15C12C13C14147.1°155.7°
C12C15C16H151125.3°120.3°
C12C15C16H152125.2°120.3°
C12C15H151H152118.3°119.4°
C12C15C16C17163.9°162.5°
O13C13C14H1418.9°0.0°
O13C13C14H142134.2°120.0°
O13C13C14H143116.4°120.0°
C13C14H141H142125.3°120.0°
C13C14H141H143125.3°120.0°
C13C14H142H143113.8°120.0°
H141C14H142H143113.8°120.0°
C16C15H151H152118.2°119.5°
C15C16C17C18179.8°179.7°
C15C16C17H170.2°0.3°
H151C15C16C1770.9°77.2°
H152C15C16C1738.6°42.2°
C16C17C18H17180.0°180.0°
C16C17C18C19179.3°179.8°
C17C18C19O192.8°13.7°
C17C18C19C20178.7°166.3°
H17C17C18C190.7°0.1°
C18C19O19C20178.5°179.9°
H211C21H212H213115.9°120.0°
C2'C1'O5'H1'118.9°120.0°
C1'C2'C3'H2'1125.3°119.8°
C1'C2'C3'H2'2125.3°119.9°
C1'C2'H2'1H2'2118.4°120.2°
C1'C2'C3'N3'168.0°173.7°
C1'C2'C3'C4'51.3°53.7°
C1'C2'C3'H3'66.2°66.1°
C2'C1'O5'C5'60.1°67.6°
O5'C1'C2'C3'50.3°61.2°
O5'C1'C2'H2'175.0°58.6°
O5'C1'C2'H2'2175.6°178.9°
C1'O5'C5'C4'62.7°67.6°
C1'O5'C5'C6'171.6°172.3°
C1'O5'C5'H5'56.2°52.4°
H1'C1'C2'C3'166.6°178.8°
H1'C1'C2'H2'141.3°61.4°
H1'C1'C2'H2'268.2°58.9°
H1'C1'O5'C5'179.1°172.3°
C3'C2'H2'1H2'2118.4°120.3°
C2'C3'N3'C4'123.1°119.3°
C2'C3'N3'H3'119.7°120.3°
C2'C3'C4'H3'120.3°119.7°
C2'C3'N3'HN'1180.0°60.0°
C2'C3'N3'HN'254.7°173.8°
C2'C3'C4'O4'62.8°66.3°
C2'C3'C4'C5'55.5°53.7°
C2'C3'C4'H4'176.2°173.5°
H2'1C2'C3'N3'42.7°53.9°
H2'1C2'C3'C4'74.0°66.1°
H2'1C2'C3'H3'168.4°174.1°
H2'2C2'C3'N3'66.7°66.5°
H2'2C2'C3'C4'176.6°173.6°
H2'2C2'C3'H3'59.0°53.8°
N3'C3'C4'H3'126.0°120.4°
C3'N3'HN'1HN'2125.3°113.8°
N3'C3'C4'O4'50.9°53.6°
N3'C3'C4'C5'169.2°173.6°
N3'C3'C4'H4'70.2°66.6°
C4'C3'N3'HN'156.9°179.3°
C4'C3'N3'HN'2177.8°66.9°
C3'C4'O4'C5'117.0°119.6°
C3'C4'O4'H4'122.2°120.2°
C3'C4'C5'H4'122.3°119.8°
C3'C4'O4'HO4'180.0°180.0°
C3'C4'C5'O5'54.6°61.2°
C3'C4'C5'C6'178.5°178.7°
C3'C4'C5'H5'66.5°58.8°
H3'C3'N3'HN'160.3°60.3°
H3'C3'N3'HN'265.0°53.5°
H3'C3'C4'O4'176.9°174.0°
H3'C3'C4'C5'64.8°66.0°
H3'C3'C4'H4'55.9°53.8°
O4'C4'C5'H4'121.2°120.2°
O4'C4'C5'O5'61.9°58.7°
O4'C4'C5'C6'62.0°61.3°
O4'C4'C5'H5'177.1°178.7°
C5'C4'O4'HO4'63.0°60.3°
C4'C5'O5'C6'125.8°120.1°
C4'C5'O5'H5'118.9°120.1°
C4'C5'C6'H5'118.3°119.9°
C4'C5'C6'H6'1180.0°180.0°
C4'C5'C6'H6'254.7°59.9°
C4'C5'C6'H6'354.7°60.0°
H4'C4'O4'HO4'57.7°59.8°
H4'C4'C5'O5'176.9°178.9°
H4'C4'C5'C6'59.2°58.9°
H4'C4'C5'H5'55.9°61.0°
O5'C5'C6'H5'120.7°119.8°
O5'C5'C6'H6'159.0°59.8°
O5'C5'C6'H6'266.2°60.3°
O5'C5'C6'H6'3175.7°179.8°
C5'C6'H6'1H6'2125.2°120.1°
C5'C6'H6'1H6'3125.2°120.0°
C5'C6'H6'2H6'3116.1°120.0°
H5'C5'C6'H6'161.7°60.1°
H5'C5'C6'H6'2173.0°179.8°
H5'C5'C6'H6'363.6°59.9°
H6'1C6'H6'2H6'3116.2°120.0°

222415

PDB entries from 2024-07-10

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