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DM2

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.38Å1.40ÅAromatic
C1C20sing1.39Å1.41ÅAromatic
C1H1sing1.08Å1.10Å
C2C3sing1.38Å1.41ÅAromatic
C2H2sing1.08Å1.10Å
C3C4doub1.39Å1.41ÅAromatic
C3H3sing1.08Å1.10Å
C4O4sing1.36Å1.40Å
C4C5sing1.40Å1.41ÅAromatic
O4C21sing1.43Å1.47Å
C5C6sing1.48Å1.41Å
C5C20doub1.41Å1.39ÅAromatic
C6O6doub1.22Å1.37Å
C6C7sing1.48Å1.42Å
C7C8doub1.39Å1.40ÅAromatic
C7C18sing1.41Å1.41ÅAromatic
C8O8sing1.36Å1.37Å
C8C9sing1.40Å1.41ÅAromatic
O8HO8sing0.97Å0.95Å
C9C10sing1.51Å1.49Å
C9C16doub1.37Å1.38ÅAromatic
C10O10sing1.43Å1.48Å
C10C11sing1.53Å1.52Å
C10H10sing1.09Å1.12Å
O10C1'sing1.43Å1.42Å
C11C12sing1.53Å1.59Å
C11H111sing1.09Å1.12Å
C11H112sing1.09Å1.11Å
C12O12sing1.43Å1.48Å
C12C13sing1.51Å1.52Å
C12C15sing1.53Å1.59Å
O12HO12sing0.97Å0.95Å
C13O13doub1.21Å1.37Å
C13C14sing1.51Å1.50Å
C14O14sing1.43Å1.40Å
C14H141sing1.09Å1.12Å
C14H142sing1.09Å1.11Å
O14HO14sing0.97Å0.95Å
C15C16sing1.51Å1.49Å
C15H151sing1.09Å1.12Å
C15H152sing1.09Å1.12Å
C16C17sing1.40Å1.42ÅAromatic
C17O17sing1.36Å1.36Å
C17C18doub1.39Å1.41ÅAromatic
O17HO17sing0.97Å0.95Å
C18C19sing1.47Å1.43Å
C19O19doub1.22Å1.32Å
C19C20sing1.48Å1.42Å
C21H211sing1.09Å1.11Å
C21H212sing1.09Å1.11Å
C21H213sing1.09Å1.11Å
C1'C2'sing1.53Å1.57Å
C1'O5'sing1.43Å1.45Å
C1'H1'sing1.09Å1.12Å
C2'C3'sing1.53Å1.55Å
C2'H2'1sing1.09Å1.12Å
C2'H2'2sing1.09Å1.11Å
C3'N3'sing1.47Å1.51Å
C3'C4'sing1.53Å1.55Å
C3'H3'sing1.09Å1.11Å
N3'HN'1sing1.01Å1.02Å
N3'HN'2sing1.01Å1.02Å
C4'O4'sing1.43Å1.49Å
C4'C5'sing1.53Å1.55Å
C4'H4'sing1.09Å1.11Å
O4'HO4'sing0.97Å0.95Å
C5'O5'sing1.42Å1.50Å
C5'C6'sing1.53Å1.54Å
C5'H5'sing1.09Å1.12Å
C6'H6'1sing1.09Å1.12Å
C6'H6'2sing1.09Å1.12Å
C6'H6'3sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C20119.9°120.0°
C2C1H1119.6°120.0°
C1C2C3119.9°120.6°
C1C2H2119.7°119.8°
C20C1H1120.5°120.0°
C1C20C5120.3°119.7°
C1C20C19118.5°120.7°
C3C2H2120.4°119.6°
C2C3C4120.4°120.4°
C2C3H3119.8°119.8°
C4C3H3119.8°119.8°
C3C4O4119.9°120.2°
C3C4C5119.2°119.6°
O4C4C5120.9°120.2°
C4O4C21120.5°106.8°
C4C5C6122.1°120.6°
C4C5C20120.2°119.7°
O4C21H211120.5°109.5°
O4C21H212108.2°109.5°
O4C21H213108.2°109.5°
C6C5C20117.6°119.7°
C5C6O6120.6°120.5°
C5C6C7123.2°119.1°
C5C20C19121.2°119.6°
O6C6C7116.2°120.4°
C6C7C8122.6°120.9°
C6C7C18118.2°119.7°
C8C7C18119.2°119.4°
C7C8O8123.1°119.8°
C7C8C9120.1°120.4°
C7C18C17119.7°119.4°
C7C18C19119.7°119.7°
O8C8C9116.8°119.8°
C8O8HO8123.1°106.8°
C8C9C10116.2°117.3°
C8C9C16121.8°120.2°
C10C9C16121.9°122.5°
C9C10O10101.4°109.2°
C9C10C11117.8°110.7°
C9C10H10111.5°109.2°
C9C16C15120.8°122.6°
C9C16C17118.1°120.1°
O10C10C11114.4°109.2°
O10C10H10115.0°109.2°
C10O10C1'120.6°106.8°
C11C10H1097.5°109.3°
C10C11C12106.4°108.3°
C10C11H111113.4°109.7°
C10C11H112113.4°109.6°
O10C1'C2'111.1°109.4°
O10C1'O5'111.6°109.4°
O10C1'H1'108.0°109.4°
C12C11H111113.4°109.7°
C12C11H112113.4°109.7°
C11C12O12123.3°109.7°
C11C12C13106.9°109.8°
C11C12C15106.9°108.3°
H111C11H11297.0°109.8°
O12C12C13105.2°109.7°
O12C12C15106.2°109.7°
C12O12HO12123.3°106.8°
C13C12C15107.6°109.7°
C12C13O13119.5°120.0°
C12C13C14118.3°120.0°
C12C15C16112.0°110.6°
C12C15H151111.3°109.2°
C12C15H152111.2°109.3°
O13C13C14122.2°120.0°
C13C14O14113.5°109.5°
C13C14H141110.7°109.4°
C13C14H142110.7°109.5°
O14C14H141110.7°109.5°
O14C14H142110.7°109.5°
C14O14HO14113.5°106.8°
H141C14H14299.6°109.4°
C16C15H151111.3°109.2°
C16C15H152111.3°109.3°
C15C16C17121.1°117.3°
H151C15H15299.1°109.2°
C16C17O17117.8°119.8°
C16C17C18121.0°120.4°
O17C17C18121.0°119.8°
C17O17HO17117.9°106.8°
C17C18C19120.6°120.9°
C18C19O19118.1°120.4°
C18C19C20120.1°119.2°
O19C19C20121.8°120.4°
H211C21H212108.3°109.4°
H211C21H213108.3°109.4°
H212C21H213101.7°109.5°
C2'C1'O5'112.4°109.7°
C2'C1'H1'107.0°109.4°
C1'C2'C3'105.5°109.0°
C1'C2'H2'1113.7°109.5°
C1'C2'H2'2113.7°109.5°
O5'C1'H1'106.5°109.4°
C1'O5'C5'113.3°107.7°
C3'C2'H2'1113.7°109.6°
C3'C2'H2'2113.7°109.6°
C2'C3'N3'107.6°109.6°
C2'C3'C4'112.3°108.7°
C2'C3'H3'108.9°109.6°
H2'1C2'H2'296.8°109.6°
N3'C3'C4'109.8°109.7°
N3'C3'H3'111.5°109.6°
C3'N3'HN'1107.6°106.7°
C3'N3'HN'2112.9°106.7°
C4'C3'H3'106.7°109.6°
C3'C4'O4'103.0°109.5°
C3'C4'C5'110.0°109.0°
C3'C4'H4'114.5°109.6°
HN'1N3'HN'2113.0°106.7°
O4'C4'C5'112.6°109.6°
O4'C4'H4'111.9°109.5°
C4'O4'HO4'102.9°106.8°
C5'C4'H4'105.1°109.6°
C4'C5'O5'107.8°109.7°
C4'C5'C6'114.3°109.4°
C4'C5'H5'106.0°109.4°
O5'C5'C6'104.7°109.4°
O5'C5'H5'115.3°109.4°
C6'C5'H5'109.0°109.4°
C5'C6'H6'1114.3°109.5°
C5'C6'H6'2110.5°109.5°
C5'C6'H6'3110.5°109.5°
H6'1C6'H6'2110.4°109.5°
H6'1C6'H6'3110.4°109.5°
H6'2C6'H6'399.8°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C20H1180.0°180.0°
C1C2C3H2180.0°180.0°
C1C2C3C40.4°0.0°
C1C2C3H3179.6°180.0°
C2C1C20C51.5°0.2°
C2C1C20C19180.0°180.0°
C20C1C2C30.5°0.0°
C20C1C2H2179.5°180.0°
C1C20C5C41.5°0.5°
C1C20C5C6179.3°179.8°
C1C20C5C19178.5°179.7°
C1C20C19C18180.0°166.2°
C1C20C19O190.4°13.8°
H1C1C2C3179.5°180.0°
H1C1C2H20.5°0.0°
H1C1C20C5178.5°179.8°
H1C1C20C190.0°0.1°
C2C3C4H3180.0°180.0°
C2C3C4O4179.7°180.0°
C2C3C4C50.4°0.2°
H2C2C3C4179.6°180.0°
H2C2C3H30.4°0.0°
C3C4O4C5179.2°179.7°
C3C4O4C212.5°0.0°
C3C4C5C6178.2°179.7°
C3C4C5C200.6°0.5°
H3C3C4O40.4°0.0°
H3C3C4C5179.6°179.8°
O4C4C5C61.0°0.5°
O4C4C5C20178.7°179.7°
C4O4C21H211180.0°180.0°
C4O4C21H21254.7°60.0°
C4O4C21H21354.8°60.0°
C5C4O4C21176.7°179.7°
C4C5C6C20177.7°179.2°
C4C5C6O61.5°13.3°
C4C5C6C7178.7°166.4°
C4C5C20C19180.0°179.8°
O4C21H211H212125.2°120.0°
O4C21H211H213125.2°120.0°
O4C21H212H213113.9°120.0°
C5C6O6C7179.8°179.7°
C5C6C7C8179.0°165.9°
C5C6C7C181.1°14.1°
C6C5C20C192.2°0.5°
C20C5C6O6179.2°166.0°
C20C5C6C71.0°14.3°
C5C20C19C181.5°13.5°
C5C20C19O19178.9°166.5°
O6C6C7C80.7°13.8°
O6C6C7C18178.7°166.2°
C6C7C8C18177.9°180.0°
C6C7C8O82.6°0.1°
C6C7C8C9178.0°179.9°
C6C7C18C17179.6°179.9°
C6C7C18C191.9°0.1°
C7C8O8C9179.4°180.0°
C7C8O8HO8180.0°93.0°
C7C8C9C10177.3°179.6°
C7C8C9C161.7°0.3°
C8C7C18C171.5°0.1°
C8C7C18C19179.9°179.9°
C18C7C8O8179.4°179.9°
C18C7C8C90.1°0.1°
C7C18C17C161.3°0.0°
C7C18C17O17178.3°179.9°
C7C18C17C19178.6°179.9°
C7C18C19O19179.0°166.3°
C7C18C19C200.6°13.7°
O8C8C9C102.1°0.3°
O8C8C9C16177.7°179.7°
C9C8O8HO80.7°87.0°
C8C9C10C16175.6°180.0°
C8C9C10O1064.6°42.2°
C8C9C10C11169.9°162.4°
C8C9C10H1058.3°77.2°
C8C9C16C15179.8°179.5°
C8C9C16C171.9°0.4°
C9C10O10C11127.8°121.1°
C9C10O10H10120.4°119.4°
C9C10C11H10119.2°120.3°
C9C10O10C1'144.0°127.9°
C9C10C11C1243.9°51.1°
C9C10C11H11181.4°68.7°
C9C10C11H112169.2°170.7°
C10C9C16C154.8°0.5°
C10C9C16C17177.3°179.6°
C16C9C10O10111.1°137.9°
C16C9C10C1114.5°17.6°
C16C9C10H10126.0°102.7°
C9C16C15C1227.1°17.7°
C9C16C15C17177.8°179.9°
C9C16C15H15198.2°102.6°
C9C16C15H152152.4°138.0°
C9C16C17O17176.6°179.9°
C9C16C17C180.4°0.2°
O10C10C11H10121.9°119.5°
O10C10C11C1275.0°171.3°
O10C10C11H111159.7°51.6°
O10C10C11H11250.3°69.0°
C10O10C1'C2'141.9°167.6°
C10O10C1'O5'91.8°72.1°
C10O10C1'H1'24.8°47.8°
C11C10O10C1'88.2°111.0°
C10C11C12H111125.3°119.7°
C10C11C12H112125.3°119.6°
C10C11H111H112119.3°120.5°
C10C11C12O1259.9°170.5°
C10C11C12C13178.3°49.9°
C10C11C12C1563.3°69.8°
H10C10O10C1'23.5°8.5°
H10C10C11C12163.1°69.2°
H10C10C11H11137.8°171.0°
H10C10C11H11271.7°50.4°
O10C1'C2'O5'125.8°120.1°
O10C1'C2'H1'117.6°119.9°
O10C1'O5'H1'117.5°119.9°
O10C1'C2'C3'69.0°58.9°
O10C1'C2'H2'1165.7°178.7°
O10C1'C2'H2'256.3°61.0°
O10C1'O5'C5'63.6°52.4°
C12C11H111H112119.2°120.6°
C11C12O12C13122.6°120.6°
C11C12O12C15123.5°118.8°
C11C12C13C15114.5°118.8°
C11C12O12HO12180.0°178.8°
C11C12C13O1384.3°94.5°
C11C12C13C1495.9°85.4°
C11C12C15C1656.4°51.1°
C11C12C15H15168.9°69.2°
C11C12C15H152178.3°171.5°
H111C11C12O12174.8°69.8°
H111C11C12C1353.0°169.6°
H111C11C12C1562.0°49.9°
H112C11C12O1265.4°50.8°
H112C11C12C1356.4°69.8°
H112C11C12C15171.4°170.5°
O12C12C13C15112.9°120.6°
O12C12C13O13143.1°144.9°
O12C12C13C1436.7°35.1°
O12C12C15C1676.9°170.8°
O12C12C15H151157.9°50.5°
O12C12C15H15248.5°68.9°
C13C12O12HO1257.4°60.5°
C12C13O13C14179.8°180.0°
C12C13C14O14179.9°180.0°
C12C13C14H14154.7°60.0°
C12C13C14H14254.8°59.9°
C13C12C15C16170.9°68.6°
C13C12C15H15145.6°171.1°
C13C12C15H15263.8°51.7°
C15C12O12HO1256.5°60.0°
C15C12C13O1330.2°24.3°
C15C12C13C14149.6°155.7°
C12C15C16H151125.3°120.3°
C12C15C16H152125.3°120.3°
C12C15H151H152117.1°119.4°
C12C15C16C17155.1°162.4°
O13C13C14O140.2°0.0°
O13C13C14H141125.4°120.0°
O13C13C14H142125.0°120.1°
C13C14O14H141125.2°120.0°
C13C14O14H142125.2°120.0°
C13C14H141H142116.6°120.0°
C13C14O14HO14180.0°180.0°
O14C14H141H142116.6°120.1°
H141C14O14HO1454.8°60.0°
H142C14O14HO1454.8°60.0°
C16C15H151H152117.2°119.5°
C15C16C17O171.2°0.2°
C15C16C17C18178.3°179.7°
H151C15C16C1779.7°77.3°
H152C15C16C1729.8°42.1°
C16C17O17C18177.1°179.9°
C16C17O17HO17179.9°90.0°
C16C17C18C19179.9°179.9°
O17C17C18C193.2°0.2°
C18C17O17HO172.9°90.1°
C17C18C19O190.4°13.7°
C17C18C19C20179.2°166.2°
C18C19O19C20179.6°180.0°
H211C21H212H213114.0°119.9°
C2'C1'O5'H1'116.9°120.0°
C1'C2'C3'H2'1125.3°119.8°
C1'C2'C3'H2'2125.2°119.9°
C1'C2'H2'1H2'2119.6°120.2°
C1'C2'C3'N3'176.7°173.6°
C1'C2'C3'C4'55.6°53.7°
C1'C2'C3'H3'62.3°66.0°
C2'C1'O5'C5'62.0°67.6°
O5'C1'C2'C3'56.8°61.2°
O5'C1'C2'H2'168.4°58.7°
O5'C1'C2'H2'2177.9°178.9°
C1'O5'C5'C4'59.6°67.6°
C1'O5'C5'C6'178.4°172.3°
C1'O5'C5'H5'58.6°52.4°
H1'C1'C2'C3'173.4°178.8°
H1'C1'C2'H2'148.1°61.4°
H1'C1'C2'H2'261.3°58.8°
H1'C1'O5'C5'178.9°172.3°
C3'C2'H2'1H2'2119.7°120.3°
C2'C3'N3'C4'122.5°119.3°
C2'C3'N3'H3'119.4°120.4°
C2'C3'C4'H3'119.3°119.8°
C2'C3'N3'HN'1180.0°60.0°
C2'C3'N3'HN'254.7°173.8°
C2'C3'C4'O4'61.7°66.3°
C2'C3'C4'C5'58.5°53.7°
C2'C3'C4'H4'176.6°173.6°
H2'1C2'C3'N3'51.4°53.8°
H2'1C2'C3'C4'69.6°66.1°
H2'1C2'C3'H3'172.4°174.1°
H2'2C2'C3'N3'58.1°66.5°
H2'2C2'C3'C4'179.1°173.6°
H2'2C2'C3'H3'62.9°53.8°
N3'C3'C4'H3'121.0°120.4°
C3'N3'HN'1HN'2125.3°113.8°
N3'C3'C4'O4'58.1°53.6°
N3'C3'C4'C5'178.3°173.5°
N3'C3'C4'H4'63.7°66.5°
C4'C3'N3'HN'157.4°179.3°
C4'C3'N3'HN'2177.3°66.9°
C3'C4'O4'C5'118.4°119.6°
C3'C4'O4'H4'123.4°120.2°
C3'C4'C5'H4'123.7°119.9°
C3'C4'O4'HO4'180.0°180.0°
C3'C4'C5'O5'56.4°61.2°
C3'C4'C5'C6'172.3°178.8°
C3'C4'C5'H5'67.6°58.9°
H3'C3'N3'HN'160.6°60.4°
H3'C3'N3'HN'264.7°53.4°
H3'C3'C4'O4'179.0°173.9°
H3'C3'C4'C5'60.8°66.1°
H3'C3'C4'H4'57.3°53.8°
O4'C4'C5'H4'122.1°120.2°
O4'C4'C5'O5'57.8°58.7°
O4'C4'C5'C6'58.1°61.4°
O4'C4'C5'H5'178.2°178.8°
C5'C4'O4'HO4'61.6°60.4°
C4'C5'O5'C6'122.0°120.1°
C4'C5'O5'H5'118.2°120.1°
C4'C5'C6'H5'118.4°119.9°
C4'C5'C6'H6'1180.0°180.0°
C4'C5'C6'H6'254.8°60.0°
C4'C5'C6'H6'354.7°60.0°
H4'C4'O4'HO4'56.6°59.9°
H4'C4'C5'O5'179.9°178.9°
H4'C4'C5'C6'64.0°58.8°
H4'C4'C5'H5'56.1°61.0°
O5'C5'C6'H5'123.9°119.9°
O5'C5'C6'H6'162.4°59.7°
O5'C5'C6'H6'262.9°60.3°
O5'C5'C6'H6'3172.4°179.8°
C5'C6'H6'1H6'2125.3°120.0°
C5'C6'H6'1H6'3125.3°120.0°
C5'C6'H6'2H6'3116.4°120.0°
H5'C5'C6'H6'161.6°60.2°
H5'C5'C6'H6'2173.2°179.8°
H5'C5'C6'H6'363.7°59.9°
H6'1C6'H6'2H6'3116.2°120.0°

222415

PDB entries from 2024-07-10

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