DLZ
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C7 | C7A | sing | 1.51Å | 1.40Å | |
C7A | C5A | doub | 1.38Å | 1.40Å | |
C7A | N8 | sing | 1.35Å | 1.43Å | |
C5A | C6 | sing | 1.51Å | 1.41Å | |
C5A | N5 | sing | 1.32Å | 1.41Å | |
N5 | C4A | doub | 1.32Å | 1.43Å | |
C4A | C4 | sing | 1.48Å | 1.41Å | |
C4A | C8 | sing | 1.42Å | 1.39Å | |
C4 | O4 | doub | 1.22Å | 1.23Å | |
C4 | N3 | sing | 1.35Å | 1.38Å | |
N3 | C2 | sing | 1.34Å | 1.37Å | |
C2 | O2 | doub | 1.22Å | 1.22Å | |
C2 | N1 | sing | 1.33Å | 1.37Å | |
N1 | C8 | doub | 1.33Å | 1.38Å | |
C8 | N8 | sing | 1.36Å | 1.38Å | |
N8 | C1' | sing | 1.47Å | 1.49Å | |
C1' | C2' | sing | 1.53Å | 1.55Å | |
C2' | O2' | sing | 1.43Å | 1.45Å | |
C2' | C3' | sing | 1.53Å | 1.53Å | |
C3' | O3' | sing | 1.43Å | 1.41Å | |
C3' | C4' | sing | 1.53Å | 1.52Å | |
C4' | O4' | sing | 1.43Å | 1.44Å | |
C4' | C5' | sing | 1.53Å | 1.53Å | |
C5' | O5' | sing | 1.43Å | 1.43Å | |
C7 | H7 | sing | 1.09Å | 1.10Å | |
C7 | H7A | sing | 1.09Å | 1.10Å | |
C7 | H7B | sing | 1.09Å | 1.10Å | |
C6 | H6 | sing | 1.09Å | 1.10Å | |
C6 | H6A | sing | 1.09Å | 1.10Å | |
C6 | H6B | sing | 1.09Å | 1.10Å | |
N3 | HN3 | sing | 0.97Å | 1.00Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C1' | H1'A | sing | 1.09Å | 1.10Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O4' | HO4' | sing | 0.97Å | 0.95Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'A | sing | 1.09Å | 1.10Å | |
O5' | HO5' | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C7 | C7A | C5A | 118.7° | 119.8° |
C7 | C7A | N8 | 121.9° | 119.8° |
C7A | C7 | H7 | 109.5° | 109.5° |
C7A | C7 | H7A | 109.5° | 109.5° |
C7A | C7 | H7B | 109.5° | 109.5° |
C5A | C7A | N8 | 119.3° | 120.5° |
C7A | C5A | C6 | 119.9° | 119.4° |
C7A | C5A | N5 | 118.9° | 121.2° |
C7A | N8 | C8 | 120.4° | 118.8° |
C7A | N8 | C1' | 122.4° | 120.6° |
C6 | C5A | N5 | 121.2° | 119.4° |
C5A | C6 | H6 | 109.5° | 109.5° |
C5A | C6 | H6A | 109.5° | 109.5° |
C5A | C6 | H6B | 109.4° | 109.4° |
C5A | N5 | C4A | 121.8° | 120.3° |
N5 | C4A | C4 | 124.5° | 121.9° |
N5 | C4A | C8 | 117.7° | 120.2° |
C4 | C4A | C8 | 117.8° | 117.8° |
C4A | C4 | O4 | 124.6° | 121.3° |
C4A | C4 | N3 | 120.1° | 117.4° |
C4A | C8 | N1 | 120.5° | 119.2° |
C4A | C8 | N8 | 121.8° | 119.0° |
O4 | C4 | N3 | 115.3° | 121.3° |
C4 | N3 | C2 | 120.6° | 120.6° |
C4 | N3 | HN3 | 119.7° | 119.8° |
N3 | C2 | O2 | 121.2° | 118.4° |
N3 | C2 | N1 | 119.7° | 123.2° |
C2 | N3 | HN3 | 119.7° | 119.6° |
O2 | C2 | N1 | 119.2° | 118.4° |
C2 | N1 | C8 | 121.2° | 121.7° |
N1 | C8 | N8 | 117.7° | 121.8° |
C8 | N8 | C1' | 117.2° | 120.6° |
N8 | C1' | C2' | 113.4° | 109.5° |
N8 | C1' | H1' | 108.2° | 109.4° |
N8 | C1' | H1'A | 107.3° | 109.5° |
C1' | C2' | O2' | 111.5° | 109.5° |
C1' | C2' | C3' | 107.4° | 109.5° |
C2' | C1' | H1' | 108.2° | 109.5° |
C2' | C1' | H1'A | 107.3° | 109.5° |
C1' | C2' | H2' | 108.9° | 109.4° |
O2' | C2' | C3' | 107.6° | 109.5° |
O2' | C2' | H2' | 108.8° | 109.4° |
C2' | O2' | HO2' | 109.5° | 113.9° |
C2' | C3' | O3' | 104.7° | 109.5° |
C2' | C3' | C4' | 113.9° | 109.5° |
C3' | C2' | H2' | 112.7° | 109.5° |
C2' | C3' | H3' | 109.3° | 109.4° |
O3' | C3' | C4' | 107.9° | 109.5° |
O3' | C3' | H3' | 115.1° | 109.5° |
C3' | O3' | HO3' | 109.5° | 114.1° |
C3' | C4' | O4' | 112.8° | 109.5° |
C3' | C4' | C5' | 109.7° | 109.5° |
C4' | C3' | H3' | 106.2° | 109.5° |
C3' | C4' | H4' | 106.5° | 109.5° |
O4' | C4' | C5' | 107.8° | 109.5° |
O4' | C4' | H4' | 108.4° | 109.5° |
C4' | O4' | HO4' | 109.5° | 114.0° |
C4' | C5' | O5' | 105.6° | 109.5° |
C5' | C4' | H4' | 111.6° | 109.4° |
C4' | C5' | H5' | 110.8° | 109.5° |
C4' | C5' | H5'A | 111.6° | 109.4° |
O5' | C5' | H5' | 110.8° | 109.5° |
O5' | C5' | H5'A | 111.6° | 109.4° |
C5' | O5' | HO5' | 109.5° | 114.0° |
H7 | C7 | H7A | 109.5° | 109.5° |
H7 | C7 | H7B | 109.4° | 109.4° |
H7A | C7 | H7B | 109.5° | 109.5° |
H6 | C6 | H6A | 109.5° | 109.5° |
H6 | C6 | H6B | 109.5° | 109.5° |
H6A | C6 | H6B | 109.5° | 109.5° |
H1' | C1' | H1'A | 112.6° | 109.5° |
H5' | C5' | H5'A | 106.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C7 | C7A | C5A | N8 | 175.9° | 179.8° |
C7 | C7A | C5A | C6 | 2.8° | 0.1° |
C7 | C7A | C5A | N5 | 177.1° | 180.0° |
C7 | C7A | N8 | C8 | 179.6° | 179.8° |
C7 | C7A | N8 | C1' | 2.7° | 0.0° |
C7A | C7 | H7 | H7A | 120.0° | 120.0° |
C7A | C7 | H7 | H7B | 120.0° | 120.0° |
C7A | C7 | H7A | H7B | 120.0° | 120.0° |
C7A | C5A | C6 | N5 | 179.9° | 179.9° |
C7A | C5A | N5 | C4A | 2.1° | 0.1° |
C5A | C7A | N8 | C8 | 3.8° | 0.5° |
C5A | C7A | N8 | C1' | 178.5° | 179.8° |
C5A | C7A | C7 | H7 | 57.6° | 84.8° |
C5A | C7A | C7 | H7A | 62.4° | 155.2° |
C5A | C7A | C7 | H7B | 177.6° | 35.2° |
C7A | C5A | C6 | H6 | 130.3° | 92.9° |
C7A | C5A | C6 | H6A | 109.7° | 147.1° |
C7A | C5A | C6 | H6B | 10.3° | 27.1° |
N8 | C7A | C5A | C6 | 178.7° | 179.7° |
N8 | C7A | C5A | N5 | 1.2° | 0.2° |
C7A | N8 | C8 | C4A | 3.2° | 0.5° |
C7A | N8 | C8 | N1 | 179.1° | 179.7° |
C7A | N8 | C8 | C1' | 177.8° | 179.7° |
C7A | N8 | C1' | C2' | 100.2° | 85.7° |
N8 | C7A | C7 | H7 | 118.1° | 95.4° |
N8 | C7A | C7 | H7A | 121.8° | 24.6° |
N8 | C7A | C7 | H7B | 1.8° | 144.6° |
C7A | N8 | C1' | H1' | 139.8° | 34.2° |
C7A | N8 | C1' | H1'A | 18.1° | 154.3° |
C6 | C5A | N5 | C4A | 178.0° | 180.0° |
C5A | C6 | H6 | H6A | 120.0° | 120.0° |
C5A | C6 | H6 | H6B | 120.0° | 119.9° |
C5A | C6 | H6A | H6B | 120.0° | 119.9° |
C5A | N5 | C4A | C4 | 176.3° | 180.0° |
C5A | N5 | C4A | C8 | 2.8° | 0.0° |
N5 | C5A | C6 | H6 | 49.6° | 87.0° |
N5 | C5A | C6 | H6A | 70.4° | 33.0° |
N5 | C5A | C6 | H6B | 169.6° | 153.0° |
N5 | C4A | C4 | C8 | 179.1° | 180.0° |
N5 | C4A | C4 | O4 | 0.5° | 0.0° |
N5 | C4A | C4 | N3 | 177.5° | 180.0° |
N5 | C4A | C8 | N1 | 177.5° | 180.0° |
N5 | C4A | C8 | N8 | 0.1° | 0.3° |
C4A | C4 | O4 | N3 | 178.1° | 180.0° |
C4A | C4 | N3 | C2 | 1.9° | 0.1° |
C4 | C4A | C8 | N1 | 3.3° | 0.0° |
C4 | C4A | C8 | N8 | 179.0° | 179.7° |
C4A | C4 | N3 | HN3 | 178.1° | 180.0° |
C8 | C4A | C4 | O4 | 178.6° | 180.0° |
C8 | C4A | C4 | N3 | 3.4° | 0.0° |
C4A | C8 | N1 | C2 | 1.7° | 0.0° |
C4A | C8 | N1 | N8 | 177.8° | 179.8° |
C4A | C8 | N8 | C1' | 179.0° | 179.8° |
O4 | C4 | N3 | C2 | 179.9° | 180.0° |
O4 | C4 | N3 | HN3 | 0.1° | 0.0° |
C4 | N3 | C2 | HN3 | 180.0° | 179.9° |
C4 | N3 | C2 | O2 | 179.5° | 179.9° |
C4 | N3 | C2 | N1 | 0.2° | 0.0° |
N3 | C2 | O2 | N1 | 179.6° | 180.0° |
N3 | C2 | N1 | C8 | 0.0° | 0.0° |
O2 | C2 | N1 | C8 | 179.6° | 180.0° |
O2 | C2 | N3 | HN3 | 0.5° | 0.0° |
C2 | N1 | C8 | N8 | 179.4° | 179.8° |
N1 | C2 | N3 | HN3 | 179.8° | 180.0° |
N1 | C8 | N8 | C1' | 1.3° | 0.0° |
C8 | N8 | C1' | C2' | 77.6° | 94.6° |
C8 | N8 | C1' | H1' | 42.4° | 145.5° |
C8 | N8 | C1' | H1'A | 164.1° | 25.5° |
N8 | C1' | C2' | H1' | 120.0° | 119.9° |
N8 | C1' | C2' | H1'A | 118.3° | 120.0° |
N8 | C1' | C2' | O2' | 57.6° | 65.9° |
N8 | C1' | C2' | C3' | 175.3° | 174.1° |
N8 | C1' | H1' | H1'A | 118.4° | 120.0° |
N8 | C1' | C2' | H2' | 62.4° | 54.1° |
C1' | C2' | O2' | C3' | 117.5° | 120.1° |
C1' | C2' | O2' | H2' | 120.1° | 120.0° |
C1' | C2' | C3' | H2' | 120.0° | 120.0° |
C1' | C2' | C3' | O3' | 58.0° | 60.0° |
C1' | C2' | C3' | C4' | 175.7° | 180.0° |
C2' | C1' | H1' | H1'A | 118.4° | 120.0° |
C1' | C2' | O2' | HO2' | 47.3° | 55.3° |
C1' | C2' | C3' | H3' | 65.8° | 60.0° |
O2' | C2' | C3' | H2' | 119.9° | 120.0° |
O2' | C2' | C3' | O3' | 178.2° | 180.0° |
O2' | C2' | C3' | C4' | 64.2° | 60.0° |
O2' | C2' | C1' | H1' | 177.6° | 174.2° |
O2' | C2' | C1' | H1'A | 60.7° | 54.2° |
O2' | C2' | C3' | H3' | 54.3° | 60.1° |
C2' | C3' | O3' | C4' | 121.7° | 120.0° |
C2' | C3' | O3' | H3' | 120.0° | 119.9° |
C2' | C3' | C4' | H3' | 120.3° | 120.0° |
C2' | C3' | C4' | O4' | 68.5° | 60.0° |
C2' | C3' | C4' | C5' | 171.2° | 180.0° |
C3' | C2' | C1' | H1' | 64.7° | 54.1° |
C3' | C2' | C1' | H1'A | 57.0° | 65.9° |
C3' | C2' | O2' | HO2' | 164.8° | 64.8° |
C2' | C3' | O3' | HO3' | 166.6° | 60.0° |
C2' | C3' | C4' | H4' | 50.3° | 60.1° |
O3' | C3' | C4' | H3' | 123.9° | 120.1° |
O3' | C3' | C4' | O4' | 175.6° | 180.0° |
O3' | C3' | C4' | C5' | 55.4° | 60.0° |
O3' | C3' | C2' | H2' | 61.9° | 60.0° |
O3' | C3' | C4' | H4' | 65.5° | 59.9° |
C3' | C4' | O4' | C5' | 121.3° | 120.0° |
C3' | C4' | O4' | H4' | 117.7° | 120.1° |
C3' | C4' | C5' | H4' | 117.8° | 120.0° |
C3' | C4' | C5' | O5' | 165.6° | 175.0° |
C4' | C3' | C2' | H2' | 55.7° | 60.0° |
C4' | C3' | O3' | HO3' | 44.9° | 60.0° |
C3' | C4' | O4' | HO4' | 48.9° | 60.0° |
C3' | C4' | C5' | H5' | 45.6° | 55.0° |
C3' | C4' | C5' | H5'A | 73.0° | 65.0° |
O4' | C4' | C5' | H4' | 119.0° | 120.0° |
O4' | C4' | C5' | O5' | 71.2° | 64.9° |
O4' | C4' | C3' | H3' | 51.7° | 60.0° |
O4' | C4' | C5' | H5' | 168.8° | 175.0° |
O4' | C4' | C5' | H5'A | 50.2° | 55.0° |
C4' | C5' | O5' | H5' | 120.0° | 120.0° |
C4' | C5' | O5' | H5'A | 121.5° | 119.9° |
C5' | C4' | C3' | H3' | 68.5° | 60.0° |
C5' | C4' | O4' | HO4' | 170.3° | 60.0° |
C4' | C5' | H5' | H5'A | 121.6° | 120.0° |
C4' | C5' | O5' | HO5' | 107.0° | 180.0° |
O5' | C5' | C4' | H4' | 47.7° | 55.0° |
O5' | C5' | H5' | H5'A | 121.5° | 120.0° |
H7 | C7 | H7A | H7B | 120.0° | 120.0° |
H6 | C6 | H6A | H6B | 120.0° | 120.1° |
H1' | C1' | C2' | H2' | 57.6° | 65.9° |
H1'A | C1' | C2' | H2' | 179.3° | 174.1° |
H2' | C2' | O2' | HO2' | 72.9° | 175.2° |
H2' | C2' | C3' | H3' | 174.2° | 180.0° |
H3' | C3' | O3' | HO3' | 73.4° | 180.0° |
H3' | C3' | C4' | H4' | 170.6° | 180.0° |
H4' | C4' | O4' | HO4' | 68.8° | 180.0° |
H4' | C4' | C5' | H5' | 72.2° | 65.0° |
H4' | C4' | C5' | H5'A | 169.2° | 175.0° |
H5' | C5' | O5' | HO5' | 133.0° | 60.0° |
H5'A | C5' | O5' | HO5' | 14.5° | 60.1° |