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Summary Geometry Related PDB entries

Obsolete: DLA

DLA was replaced with LAC on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C1	doub	1.21Å	1.24Å
O2	C1	sing	1.34Å	1.24Å
O2	HO2	sing	0.97Å	0.95Å
O3	C2	sing	1.43Å	1.43Å
O3	HO3	sing	0.97Å	0.95Å
C1	C2	sing	1.51Å	1.52Å
C2	C3	sing	1.53Å	1.53Å
C2	H2	sing	1.09Å	1.11Å
C3	H31	sing	1.09Å	1.11Å
C3	H32	sing	1.09Å	1.12Å
C3	H33	sing	1.09Å	1.11Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	O2	123.4°	120.0°
O1	C1	C2	118.8°	120.0°
C1	O2	HO2	123.5°	120.0°
O2	C1	C2	117.8°	120.1°
C2	O3	HO3	106.4°	106.8°
O3	C2	C1	106.4°	109.5°
O3	C2	C3	110.9°	109.5°
O3	C2	H2	111.3°	109.5°
C1	C2	C3	111.6°	109.5°
C1	C2	H2	110.6°	109.4°
C3	C2	H2	106.1°	109.5°
C2	C3	H31	110.9°	109.5°
C2	C3	H32	111.7°	109.5°
C2	C3	H33	111.7°	109.4°
H31	C3	H32	111.7°	109.5°
H31	C3	H33	111.7°	109.5°
H32	C3	H33	98.7°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	O2	C2	179.4°	179.9°
O1	C1	O2	HO2	180.0°	0.0°
O1	C1	C2	O3	143.9°	0.1°
O1	C1	C2	C3	22.7°	120.1°
O1	C1	C2	H2	95.1°	120.0°
O2	C1	C2	O3	36.7°	180.0°
O2	C1	C2	C3	157.8°	60.0°
O2	C1	C2	H2	84.3°	60.0°
HO2	O2	C1	C2	0.6°	179.9°
O3	C2	C1	C3	121.1°	120.0°
O3	C2	C1	H2	121.0°	120.1°
O3	C2	C3	H2	121.0°	120.0°
O3	C2	C3	H31	180.0°	60.0°
O3	C2	C3	H32	54.8°	179.9°
O3	C2	C3	H33	54.7°	60.0°
HO3	O3	C2	C1	180.0°	59.9°
HO3	O3	C2	C3	58.4°	60.1°
HO3	O3	C2	H2	59.4°	179.9°
C1	C2	C3	H2	120.5°	119.9°
C1	C2	C3	H31	61.5°	180.0°
C1	C2	C3	H32	63.7°	59.9°
C1	C2	C3	H33	173.1°	60.0°
C2	C3	H31	H32	125.2°	120.0°
C2	C3	H31	H33	125.3°	120.0°
C2	C3	H32	H33	117.6°	119.9°
H2	C2	C3	H31	59.0°	60.0°
H2	C2	C3	H32	175.8°	60.0°
H2	C2	C3	H33	66.3°	179.9°
H31	C3	H32	H33	117.6°	120.0°

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PDB entries from 2024-09-11

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