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DL5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2N1doub1.32Å1.38ÅAromatic
C6N1sing1.33Å1.43ÅAromatic
N3C2sing1.32Å1.38ÅAromatic
C2H2sing1.08Å1.08Å
C4N3doub1.33Å1.40ÅAromatic
N9C4sing1.37Å1.37ÅAromatic
C4C5sing1.41Å1.40ÅAromatic
N7C5sing1.35Å1.34ÅAromatic
C5C6doub1.41Å1.44ÅAromatic
C6N6sing1.38Å1.35Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
C8N7doub1.30Å1.30ÅAromatic
N9C8sing1.36Å1.36ÅAromatic
C8H8sing1.08Å1.08Å
C1'N9sing1.47Å1.51Å
O1APAdoub1.48Å1.58Å
O2APAsing1.61Å1.52Å
PAO3Asing1.61Å1.63Å
PAO5'sing1.61Å1.67Å
O3APBsing1.61Å1.72Å
O2BPBdoub1.48Å1.39Å
PBO1Bsing1.61Å1.42Å
PBC01sing1.82Å1.81Å
O1GPGdoub1.48Å1.60Å
O3GPGsing1.61Å1.45Å
PGC01sing1.82Å1.77Å
PGO2Gsing1.61Å1.60Å
C01H01sing1.09Å1.10Å
C01H01Asing1.09Å1.10Å
C2'C1'sing1.55Å1.56Å
C1'O4'sing1.44Å1.39Å
C1'H1'sing1.09Å1.10Å
O1BHO1Bsing0.97Å0.95Å
C2FC1Fsing1.50Å1.57Å
O3'C1Fsing1.47Å1.53Å
C1FO2'sing1.44Å1.54Å
C1FC6Fsing1.50Å1.57Å
C3'C2'sing1.56Å1.59Å
O2'C2'sing1.44Å1.46Å
C2'H2'sing1.09Å1.10Å
O2AHO2Asing0.97Å0.95Å
N2FC2Fsing1.48Å1.45Å
C3FC2Fdoub1.32Å1.42Å
O2FN2Fdoub1.22Å1.19Å
O3FN2Fsing1.22Å1.22Å
O2GHO2Gsing0.97Å0.95Å
O3'C3'sing1.45Å1.46Å
C3'C4'sing1.54Å1.45Å
C3'H3'sing1.09Å1.10Å
C3FC4Fsing1.48Å1.39Å
C3FH3Fsing1.08Å1.08Å
O3GHO3Gsing0.97Å0.95Å
C5'C4'sing1.53Å1.62Å
C4'O4'sing1.44Å1.48Å
C4'H4'sing1.09Å1.10Å
N4FC4Fdoub1.31Å1.34Å
C4FC5Fsing1.48Å1.42Å
O5FN4Fsing1.42Å1.22Å
N4FO4Fsing1.42Å1.23Å
O5'C5'sing1.43Å1.46Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
C5FC6Fdoub1.32Å1.51Å
C5FH5Fsing1.08Å1.08Å
C6FN6Fsing1.48Å1.47Å
N6FO7Fsing1.22Å1.18Å
N6FO6Fdoub1.22Å1.25Å
H4FO4Fsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6117.6°121.2°
N1C2N3121.2°122.5°
N1C2H2119.4°118.7°
N1C6C5120.0°118.5°
N1C6N6120.4°120.7°
N3C2H2119.4°118.8°
C2N3C4124.1°120.6°
N3C4N9137.6°135.0°
N3C4C5116.2°119.1°
N9C4C5106.2°106.0°
C4N9C8103.6°107.5°
C4N9C1'124.3°126.2°
C4C5N7110.5°107.2°
C4C5C6120.9°118.1°
N7C5C6128.6°134.7°
C5N7C8104.2°109.5°
C5C6N6119.6°120.8°
C6N6HN6109.5°120.0°
C6N6HN6A109.5°120.0°
HN6N6HN6A109.5°120.0°
N7C8N9115.5°110.0°
N7C8H8122.2°125.0°
N9C8H8122.3°125.0°
C8N9C1'132.1°126.3°
N9C1'C2'116.6°110.6°
N9C1'O4'107.8°110.5°
N9C1'H1'111.0°110.5°
O1APAO2A115.0°109.5°
O1APAO3A114.1°109.4°
O1APAO5'107.3°109.5°
O2APAO3A102.6°109.4°
O2APAO5'117.0°109.5°
PAO2AHO2A109.5°114.0°
O3APAO5'100.0°109.5°
PAO3APB132.6°134.0°
PAO5'C5'122.7°122.9°
O3APBO2B113.7°109.5°
O3APBO1B102.0°109.5°
O3APBC01117.6°109.5°
O2BPBO1B108.7°109.5°
O2BPBC01105.8°109.5°
O1BPBC01108.7°109.4°
PBO1BHO1B109.5°114.0°
PBC01PG116.6°109.5°
PBC01H01107.7°109.5°
PBC01H01A107.7°109.5°
O1GPGO3G106.5°109.5°
O1GPGC01113.9°109.5°
O1GPGO2G106.7°109.4°
O3GPGC01115.2°109.5°
O3GPGO2G109.4°109.4°
PGO3GHO3G109.5°114.0°
C01PGO2G104.7°109.5°
PGC01H01107.7°109.4°
PGC01H01A107.6°109.5°
PGO2GHO2G109.5°114.1°
H01C01H01A109.5°109.4°
C2'C1'O4'98.0°103.8°
C2'C1'H1'110.2°110.7°
C1'C2'C3'107.1°102.2°
C1'C2'O2'109.9°109.0°
C1'C2'H2'109.2°113.0°
O4'C1'H1'112.7°110.6°
C1'O4'C4'125.8°107.0°
C2FC1FO3'113.5°108.7°
C2FC1FO2'103.7°109.6°
C2FC1FC6F111.5°113.0°
C1FC2FN2F124.2°118.4°
C1FC2FC3F121.2°123.1°
O3'C1FO2'114.4°105.8°
O3'C1FC6F103.2°110.0°
C1FO3'C3'104.1°103.6°
O2'C1FC6F110.9°109.5°
C1FO2'C2'102.0°107.3°
C1FC6FC5F118.7°123.1°
C1FC6FN6F129.5°118.4°
C3'C2'O2'111.4°105.7°
C3'C2'H2'108.7°113.2°
C2'C3'O3'108.2°102.9°
C2'C3'C4'110.4°104.1°
C2'C3'H3'108.3°113.4°
O2'C2'H2'110.6°113.0°
N2FC2FC3F114.5°118.5°
C2FN2FO2F123.7°120.0°
C2FN2FO3F122.4°120.0°
C2FC3FC4F127.9°119.4°
C2FC3FH3F116.0°120.3°
O2FN2FO3F113.9°120.0°
O3'C3'C4'109.6°108.6°
O3'C3'H3'110.1°113.8°
C4'C3'H3'110.2°113.1°
C3'C4'C5'121.8°109.8°
C3'C4'O4'98.8°107.4°
C3'C4'H4'111.5°109.9°
C4FC3FH3F116.0°120.3°
C3FC4FN4F126.1°121.2°
C3FC4FC5F115.3°117.6°
C5'C4'O4'103.5°109.9°
C5'C4'H4'109.1°110.0°
C4'C5'O5'110.8°109.4°
C4'C5'H5'109.1°109.4°
C4'C5'H5'A109.1°109.5°
O4'C4'H4'111.0°109.9°
N4FC4FC5F118.6°121.2°
C4FN4FO5F121.8°120.0°
C4FN4FO4F123.9°120.0°
C4FC5FC6F125.4°119.3°
C4FC5FH5F117.3°120.3°
O5FN4FO4F114.3°120.0°
N4FO4FH4F109.5°114.0°
O5'C5'H5'109.1°109.5°
O5'C5'H5'A109.2°109.5°
H5'C5'H5'A109.5°109.5°
C6FC5FH5F117.3°120.3°
C5FC6FN6F111.8°118.4°
C6FN6FO7F126.7°120.0°
C6FN6FO6F120.0°120.0°
O7FN6FO6F113.4°120.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C2N3H2180.0°180.0°
N1C2N3C40.1°0.0°
C2N1C6C50.1°0.0°
C2N1C6N6179.8°180.0°
C6N1C2N30.0°0.0°
C6N1C2H2180.0°180.0°
N1C6C5C40.1°0.0°
N1C6C5N7179.9°180.0°
N1C6C5N6179.7°180.0°
N1C6N6HN60.0°179.9°
N1C6N6HN6A120.0°0.0°
C2N3C4N9179.9°180.0°
C2N3C4C50.1°0.0°
H2C2N3C4179.9°180.0°
N3C4N9C5179.8°180.0°
N3C4C5N7180.0°180.0°
N3C4C5C60.0°0.0°
N3C4N9C8180.0°180.0°
N3C4N9C1'0.2°0.1°
N9C4C5N70.1°0.0°
N9C4C5C6179.9°180.0°
C4N9C8N70.2°0.0°
C4N9C8C1'179.8°179.9°
C4N9C8H8179.8°180.0°
C4N9C1'C2'80.7°89.2°
C4N9C1'O4'170.5°156.4°
C4N9C1'H1'46.6°33.7°
C4C5N7C6180.0°180.0°
C4C5C6N6179.8°180.0°
C4C5N7C80.0°0.0°
C5C4N9C80.2°0.0°
C5C4N9C1'180.0°180.0°
N7C5C6N60.2°0.0°
C5N7C8N90.1°0.0°
C5N7C8H8179.9°180.0°
C5C6N6HN6179.7°0.1°
C5C6N6HN6A59.7°180.0°
C6C5N7C8180.0°180.0°
C6N6HN6HN6A120.0°179.9°
N7C8N9H8180.0°179.9°
N7C8N9C1'180.0°180.0°
C8N9C1'C2'99.6°90.9°
C8N9C1'O4'9.3°23.5°
C8N9C1'H1'133.2°146.2°
H8C8N9C1'0.0°0.1°
N9C1'C2'O4'114.5°118.6°
N9C1'C2'H1'127.6°122.8°
N9C1'O4'H1'122.8°122.7°
N9C1'C2'C3'115.1°154.3°
N9C1'C2'O2'123.8°94.1°
N9C1'C2'H2'2.4°32.4°
N9C1'O4'C4'121.6°158.6°
O1APAO2AO3A124.5°120.0°
O1APAO2AO5'127.3°120.1°
O1APAO3AO5'114.1°120.0°
O1APAO3APB160.7°40.0°
O1APAO2AHO2A0.0°180.0°
O1APAO5'C5'73.9°55.0°
O2APAO3AO5'120.8°120.0°
O2APAO3APB35.6°80.0°
O2APAO5'C5'57.0°65.0°
PAO3APBO2B90.1°60.0°
PAO3APBO1B26.7°60.0°
PAO3APBC01145.4°180.0°
O3APAO2AHO2A124.5°60.1°
O3APAO5'C5'166.8°175.0°
O5'PAO3APB85.2°160.0°
O5'PAO2AHO2A127.3°59.9°
PAO5'C5'C4'128.1°180.0°
PAO5'C5'H5'111.7°60.0°
PAO5'C5'H5'A7.9°60.1°
O3APBO2BO1B112.8°120.0°
O3APBO2BC01130.6°120.0°
O3APBO1BC01124.9°120.0°
O3APBC01PG80.3°180.0°
O3APBC01H0140.7°60.0°
O3APBC01H01A158.6°60.0°
O3APBO1BHO1B120.4°60.0°
O2BPBO1BC01114.7°120.0°
O2BPBC01PG48.0°60.0°
O2BPBC01H01169.0°60.0°
O2BPBC01H01A73.0°180.0°
O2BPBO1BHO1B0.0°180.0°
O1BPBC01PG164.5°60.0°
O1BPBC01H0174.5°180.0°
O1BPBC01H01A43.5°60.1°
PBC01PGO1G27.0°60.0°
PBC01PGO3G96.5°60.0°
PBC01PGH01121.0°120.0°
PBC01PGH01A121.0°120.0°
PBC01PGO2G143.2°180.0°
PBC01H01H01A116.8°120.0°
C01PBO1BHO1B114.7°60.1°
O1GPGO3GC01127.4°120.0°
O1GPGO3GO2G115.0°119.9°
O1GPGC01O2G116.2°120.0°
O1GPGC01H01148.1°60.0°
O1GPGC01H01A94.0°180.0°
O1GPGO2GHO2G0.0°60.0°
O1GPGO3GHO3G0.0°180.0°
O3GPGC01O2G120.3°120.0°
O3GPGC01H0124.5°180.0°
O3GPGC01H01A142.5°60.1°
O3GPGO2GHO2G114.9°60.0°
PGC01H01H01A116.7°119.9°
C01PGO2GHO2G121.0°180.0°
C01PGO3GHO3G127.4°60.0°
O2GPGC01H0195.7°60.0°
O2GPGC01H01A22.2°60.0°
O2GPGO3GHO3G115.0°60.1°
C2'C1'O4'H1'115.9°118.7°
C1'C2'O2'C1F117.8°112.9°
C1'C2'C3'O2'120.2°114.0°
C1'C2'C3'H2'117.8°121.8°
C1'C2'O2'H2'120.6°126.5°
C1'C2'C3'O3'119.2°94.2°
C1'C2'C3'C4'0.7°19.0°
C1'C2'C3'H3'121.5°142.4°
C2'C1'O4'C4'0.3°40.1°
O4'C1'C2'C3'0.6°35.8°
O4'C1'C2'O2'121.7°147.3°
O4'C1'C2'H2'116.9°86.2°
C1'O4'C4'C3'0.1°27.6°
C1'O4'C4'C5'125.7°147.0°
C1'O4'C4'H4'117.3°91.8°
H1'C1'C2'C3'117.3°82.9°
H1'C1'C2'O2'3.8°28.7°
H1'C1'C2'H2'125.2°155.2°
H1'C1'O4'C4'115.6°78.7°
C2FC1FO3'O2'118.6°117.6°
C2FC1FO3'C6F120.8°124.2°
C2FC1FO2'C6F119.7°124.5°
C2FC1FO2'C2'124.3°91.1°
C1FC2FN2FC3F179.3°179.9°
C1FC2FN2FO2F179.4°83.0°
C1FC2FN2FO3F0.5°97.1°
C2FC1FO3'C3'118.2°78.8°
C1FC2FC3FC4F0.6°0.8°
C1FC2FC3FH3F179.5°179.4°
C2FC1FC6FC5F1.3°16.8°
C2FC1FC6FN6F179.8°163.2°
O3'C1FO2'C6F116.2°118.5°
C1FO3'C3'C2'0.8°34.9°
O3'C1FO2'C2'0.2°25.9°
O3'C1FC2FN2F63.5°74.3°
O3'C1FC2FC3F117.2°105.6°
C1FO3'C3'C4'121.2°144.8°
C1FO3'C3'H3'117.4°88.2°
O3'C1FC6FC5F123.5°104.9°
O3'C1FC6FN6F58.0°75.1°
C1FO2'C2'C3'0.7°3.7°
C1FO2'C2'H2'121.6°120.6°
O2'C1FC2FN2F61.1°40.8°
O2'C1FC2FC3F118.2°139.3°
O2'C1FO3'C3'0.4°38.8°
O2'C1FC6FC5F113.6°139.2°
O2'C1FC6FN6F64.9°40.7°
C6FC1FO2'C2'116.0°144.4°
C6FC1FC2FN2F179.6°163.3°
C6FC1FC2FC3F1.1°16.8°
C6FC1FO3'C3'121.0°157.0°
C1FC6FC5FC4F1.0°0.6°
C1FC6FC5FN6F178.8°180.0°
C1FC6FC5FH5F179.0°179.3°
C1FC6FN6FO7F1.2°180.0°
C1FC6FN6FO6F179.1°0.0°
C3'C2'O2'H2'120.9°124.3°
C2'C3'O3'C4'120.4°109.9°
C2'C3'O3'H3'118.2°123.1°
C2'C3'C4'H3'119.6°123.5°
C2'C3'C4'C5'111.5°123.3°
C2'C3'C4'O4'0.5°3.9°
C2'C3'C4'H4'117.3°115.6°
O2'C2'C3'O3'1.0°19.8°
O2'C2'C3'C4'120.9°133.0°
O2'C2'C3'H3'118.3°103.6°
H2'C2'C3'O3'123.1°143.9°
H2'C2'C3'C4'117.0°102.8°
H2'C2'C3'H3'3.7°20.5°
C2FN2FO2FO3F180.0°179.9°
N2FC2FC3FC4F179.9°179.4°
N2FC2FC3FH3F0.1°0.5°
C3FC2FN2FO2F0.1°97.1°
C3FC2FN2FO3F179.9°82.8°
C2FC3FC4FH3F180.0°179.9°
C2FC3FC4FN4F179.9°163.4°
C2FC3FC4FC5F0.0°16.6°
O3'C3'C4'H3'121.3°127.4°
O3'C3'C4'C5'129.4°127.6°
O3'C3'C4'O4'118.6°113.0°
O3'C3'C4'H4'1.8°6.5°
C3'C4'C5'O4'109.5°117.9°
C3'C4'C5'H4'132.2°121.0°
C3'C4'O4'H4'117.2°119.4°
C3'C4'C5'O5'50.0°175.0°
C3'C4'C5'H5'170.2°55.0°
C3'C4'C5'H5'A70.2°65.0°
H3'C3'C4'C5'8.2°0.2°
H3'C3'C4'O4'120.2°119.6°
H3'C3'C4'H4'123.0°120.9°
C3FC4FN4FC5F180.0°179.9°
C3FC4FN4FO5F0.0°0.1°
C3FC4FN4FO4F180.0°180.0°
C3FC4FC5FC6F0.3°16.6°
C3FC4FC5FH5F179.7°163.4°
H3FC3FC4FN4F0.0°16.7°
H3FC3FC4FC5F180.0°163.3°
C5'C4'O4'H4'117.0°121.2°
C4'C5'O5'H5'120.2°120.0°
C4'C5'O5'H5'A120.2°120.0°
C4'C5'H5'H5'A119.4°120.0°
O4'C4'C5'O5'59.5°67.1°
O4'C4'C5'H5'60.7°172.9°
O4'C4'C5'H5'A179.7°52.9°
H4'C4'C5'O5'177.8°54.0°
H4'C4'C5'H5'57.6°66.0°
H4'C4'C5'H5'A62.0°174.0°
C4FN4FO5FO4F180.0°179.9°
N4FC4FC5FC6F179.7°163.3°
N4FC4FC5FH5F0.3°16.6°
C4FN4FO4FH4F179.9°179.9°
C5FC4FN4FO5F180.0°180.0°
C5FC4FN4FO4F0.0°0.1°
C4FC5FC6FH5F180.0°179.9°
C4FC5FC6FN6F179.8°179.4°
O5FN4FO4FH4F0.0°0.0°
O5'C5'H5'H5'A119.4°120.1°
C5FC6FN6FO7F179.8°0.0°
C5FC6FN6FO6F0.5°180.0°
H5FC5FC6FN6F0.2°0.7°
C6FN6FO7FO6F179.7°180.0°

223790

PDB entries from 2024-08-14

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