Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

DKM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CNsing1.47Å1.47Å
C1Nsing1.47Å1.47Å
NC2sing1.47Å1.48Å
OC5sing1.43Å1.43Å
C2C5sing1.54Å1.53Å
C2C3sing1.54Å1.52Å
C5C4sing1.54Å1.52Å
C3N1sing1.49Å1.46Å
C4N1sing1.49Å1.47Å
N1C6sing1.40Å1.46Å
C16N2sing1.47Å1.45Å
N2C17sing1.40Å1.40Å
N2C15sing1.46Å1.45Å
C6C17doub1.39Å1.42ÅAromatic
C6C7sing1.40Å1.41ÅAromatic
FC7sing1.35Å1.35Å
C17C18sing1.39Å1.41ÅAromatic
C7C8doub1.38Å1.37ÅAromatic
C15C14sing1.52Å1.49Å
C18C9doub1.40Å1.40ÅAromatic
C18N3sing1.40Å1.41Å
C8C9sing1.40Å1.39ÅAromatic
C14N3sing1.38Å1.40Å
C14C13doub1.33Å1.34Å
C9C10sing1.47Å1.49Å
N3C12sing1.35Å1.39Å
C13Ssing1.78Å1.72Å
C12Ssing1.71Å1.71Å
C12C11doub1.40Å1.41Å
C10C11sing1.43Å1.49Å
C10O1doub1.22Å1.24Å
C11C19sing1.46Å1.49Å
C19O3sing1.35Å1.33Å
C19O2doub1.22Å1.23Å
C4H9sing1.09Å1.10Å
C4H10sing1.09Å1.10Å
C5H11sing1.09Å1.10Å
C8H13sing1.08Å1.08Å
C13H14sing1.08Å1.08Å
C15H15sing1.09Å1.10Å
C15H16sing1.09Å1.10Å
O3H20sing0.97Å0.95Å
C16H18sing1.09Å1.10Å
C16H17sing1.09Å1.10Å
C16H19sing1.09Å1.10Å
C3H7sing1.09Å1.10Å
C3H8sing1.09Å1.10Å
OH12sing0.97Å0.95Å
C2H6sing1.09Å1.10Å
C1H5sing1.09Å1.10Å
C1H4sing1.09Å1.10Å
C1H3sing1.09Å1.10Å
CH2sing1.09Å1.10Å
CHsing1.09Å1.10Å
CH1sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CNC1112.4°111.0°
CNC2113.2°111.0°
NCH2109.5°109.5°
NCH109.5°109.5°
NCH1109.5°109.4°
C1NC2115.3°111.0°
NC1H5109.5°109.5°
NC1H4109.5°109.5°
NC1H3109.5°109.5°
NC2C5108.3°110.3°
NC2C3116.5°110.3°
NC2H6110.3°110.3°
OC5C2105.6°110.4°
OC5C4111.6°110.3°
OC5H11111.9°110.3°
C5OH12109.5°114.0°
C5C2C3102.1°105.1°
C2C5C4106.8°105.0°
C2C5H11110.4°110.4°
C5C2H6109.6°110.3°
C2C3N199.2°104.6°
C2C3H7112.0°110.4°
C2C3H8112.0°110.5°
C3C2H6109.7°110.3°
C5C4N1101.7°104.6°
C5C4H9111.4°110.4°
C5C4H10111.4°110.6°
C4C5H11110.4°110.3°
C3N1C4111.5°104.2°
C3N1C6121.5°111.0°
N1C3H7112.0°110.4°
N1C3H8112.0°110.4°
C4N1C6120.4°111.0°
N1C4H9111.4°110.4°
N1C4H10111.4°110.4°
N1C6C17120.1°120.0°
N1C6C7123.6°120.0°
C16N2C17111.0°111.0°
C16N2C15115.6°111.1°
N2C16H18109.5°109.5°
N2C16H17109.5°109.4°
N2C16H19109.4°109.5°
C17N2C15112.4°115.5°
N2C17C6120.6°121.1°
N2C17C18119.4°120.9°
N2C15C14116.5°110.1°
N2C15H15107.7°109.4°
N2C15H16107.7°109.3°
C17C6C7116.3°120.0°
C6C17C18120.0°117.9°
C6C7F118.8°119.2°
C6C7C8123.8°121.6°
FC7C8117.4°119.2°
C17C18C9121.2°122.6°
C17C18N3120.7°118.7°
C7C8C9120.0°119.4°
C7C8H13120.0°120.4°
C15C14N3115.0°119.7°
C15C14C13133.2°125.3°
C14C15H15107.7°109.3°
C14C15H16107.7°109.3°
C9C18N3118.0°118.7°
C18C9C8118.7°118.4°
C18C9C10121.4°119.6°
C18N3C14120.4°120.9°
C18N3C12124.6°121.5°
C8C9C10119.9°122.0°
C9C8H13120.0°120.3°
N3C14C13111.5°115.0°
C14N3C12114.7°117.6°
C14C13S112.8°106.3°
C14C13H14123.6°126.8°
C9C10C11115.9°119.2°
C9C10O1121.4°120.4°
N3C12S108.6°106.0°
N3C12C11118.8°123.5°
C13SC1292.4°94.9°
SC13H14123.6°126.9°
SC12C11132.4°130.6°
C12C11C10121.0°117.0°
C12C11C19120.0°121.4°
C11C10O1122.7°120.4°
C10C11C19119.1°121.5°
C11C19O3116.7°120.0°
C11C19O2120.8°120.0°
O3C19O2122.5°120.0°
C19O3H20109.5°113.9°
H9C4H10109.4°110.3°
H15C15H16109.5°109.4°
H18C16H17109.4°109.4°
H18C16H19109.5°109.5°
H17C16H19109.4°109.5°
H7C3H8109.5°110.4°
H5C1H4109.4°109.5°
H5C1H3109.5°109.5°
H4C1H3109.5°109.4°
H2CH109.5°109.5°
H2CH1109.5°109.5°
HCH1109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CNC1C2131.7°124.0°
CNC2C579.5°56.0°
CNC2C3166.2°171.7°
CNC2H640.4°66.1°
CNC1H5180.0°64.0°
CNC1H460.0°56.0°
CNC1H360.0°176.0°
NCH2H120.0°120.1°
NCH2H1120.0°119.9°
NCHH1120.0°120.0°
C1NC2C5149.2°180.0°
C1NC2C334.9°64.4°
C1NC2H691.0°57.8°
NC1H5H4120.0°120.0°
NC1H5H3120.0°120.0°
NC1H4H3120.0°120.0°
C1NCH2180.0°176.1°
C1NCH60.0°56.0°
C1NCH160.0°64.0°
NC2C5O86.3°122.2°
NC2C5C3123.4°118.9°
NC2C5H6120.4°122.2°
NC2C3H6126.2°122.2°
NC2C5C4154.8°118.9°
NC2C3N1159.1°142.7°
NC2C5H1134.7°0.0°
NC2C3H782.6°24.0°
NC2C3H840.9°98.4°
C2NC1H548.3°60.0°
C2NC1H471.7°180.0°
C2NC1H3168.3°60.0°
C2NCH247.3°60.0°
C2NCH167.3°180.0°
C2NCH172.7°60.0°
OC5C2C4118.9°118.9°
OC5C2H11121.0°122.2°
OC5C2C3150.2°118.9°
OC5C4H11125.1°122.1°
OC5C4N1122.7°95.2°
OC5C4H9118.6°23.7°
OC5C4H103.9°146.0°
OC5C2H634.0°0.0°
C5C2C3H6116.1°118.9°
C2C5C4H11120.0°118.9°
C5C2C3N141.5°23.8°
C2C5C4N17.8°23.8°
C2C5C4H9126.5°142.7°
C2C5C4H10111.0°95.0°
C5C2C3H7159.7°94.9°
C5C2C3H876.8°142.7°
C2C5OH12180.0°177.1°
C3C2C5C431.3°0.0°
C2C3N1H7118.3°118.7°
C2C3N1H8118.3°118.9°
C2C3N1C440.0°39.4°
C2C3N1C6168.6°159.0°
C3C2C5H1188.7°118.9°
C2C3H7H8124.8°122.5°
C5C4N1C320.6°39.5°
C5C4N1H9118.8°118.8°
C5C4N1H10118.8°119.0°
C5C4N1C6172.3°159.0°
C5C4H9H10123.6°122.5°
C4C5OH1264.4°61.4°
C4C5C2H684.9°118.9°
C3N1C4C6151.8°119.6°
C3N1C6C17165.3°124.7°
C3N1C6C714.2°55.3°
C3N1C4H998.2°158.3°
C3N1C4H10139.3°79.5°
N1C3H7H8124.8°122.4°
N1C3C2H674.7°95.1°
C4N1C6C1745.8°119.9°
C4N1C6C7134.8°60.1°
N1C4H9H10123.6°122.3°
N1C4C5H11112.2°142.8°
C4N1C3H7158.3°79.3°
C4N1C3H878.3°158.4°
N1C6C17N22.9°5.1°
N1C6C17C7179.5°180.0°
N1C6C7F2.8°0.8°
N1C6C17C18179.7°178.1°
N1C6C7C8178.6°179.3°
C6N1C4H953.6°82.1°
C6N1C4H1068.9°40.1°
C6N1C3H750.3°40.3°
C6N1C3H873.1°82.0°
C16N2C17C15131.2°127.6°
C16N2C17C678.4°85.5°
C16N2C17C1898.4°91.3°
C16N2C15C1481.9°84.3°
C16N2C15H15157.0°35.9°
C16N2C15H1639.1°155.6°
N2C16H18H17120.0°120.0°
N2C16H18H19120.0°120.0°
N2C16H17H19120.0°120.0°
N2C17C6C18176.8°176.8°
N2C17C6C7176.6°174.9°
C17N2C15C1447.0°43.2°
N2C17C18C9174.8°172.4°
N2C17C18N35.0°9.3°
C17N2C15H1574.1°163.4°
C17N2C15H16168.0°76.9°
C17N2C16H18180.0°60.0°
C17N2C16H1760.0°180.0°
C17N2C16H1960.0°60.0°
C15N2C17C6150.4°146.9°
C15N2C17C1832.8°36.3°
N2C15C14H15121.0°120.2°
N2C15C14H16121.0°120.1°
N2C15C14N332.7°28.2°
N2C15C14C13155.0°151.2°
N2C15H15H16116.8°119.6°
C15N2C16H1850.5°70.0°
C15N2C16H17170.5°50.0°
C15N2C16H1969.6°170.0°
C17C6C7F177.7°179.2°
C17C6C7C80.9°0.7°
C6C17C18C92.0°4.5°
C6C17C18N3178.2°173.8°
C6C7FC8178.7°179.9°
C7C6C17C180.2°1.9°
C6C7C8C90.1°0.9°
C6C7C8H13179.9°179.0°
FC7C8C9178.5°179.0°
FC7C8H131.5°1.1°
C17C18C9N3179.8°178.3°
C17C18C9C82.8°4.3°
C17C18N3C1410.5°7.3°
C17C18C9C10176.3°174.8°
C17C18N3C12174.6°172.9°
C7C8C9C181.7°1.5°
C7C8C9H13180.0°179.9°
C7C8C9C10177.4°177.6°
C15C14N3C183.7°3.5°
C15C14N3C13173.9°179.4°
C15C14N3C12171.7°176.2°
C15C14C13S171.3°178.6°
C15C14C13H148.7°1.4°
C14C15H15H16116.8°119.7°
C18C9C8C10179.1°179.1°
C9C18N3C14169.7°171.0°
C9C18N3C125.2°8.7°
C18C9C10C110.4°1.2°
C18C9C10O1177.4°178.6°
C18C9C8H13178.3°178.5°
N3C18C9C8177.4°174.0°
C18N3C14C12175.4°179.8°
C18N3C14C13177.6°175.9°
N3C18C9C103.5°6.9°
C18N3C12S177.4°176.0°
C18N3C12C112.5°4.8°
C8C9C10C11178.7°179.6°
C8C9C10O13.6°0.5°
N3C14C13S1.2°2.0°
C14N3C12S2.2°4.2°
C14N3C12C11172.7°175.0°
N3C14C13H14178.8°178.0°
N3C14C15H1588.3°148.4°
N3C14C15H16153.8°91.9°
C13C14N3C122.2°4.3°
C14C13SH14180.0°180.0°
C14C13SC120.1°0.3°
C13C14C15H1584.0°31.0°
C13C14C15H1634.0°88.7°
C9C10C11C123.1°2.8°
C9C10C11O1177.8°179.8°
C9C10C11C19177.7°177.3°
C10C9C8H132.6°2.3°
N3C12SC131.3°2.5°
N3C12SC11173.9°179.2°
N3C12C11C101.8°1.1°
N3C12C11C19179.0°178.9°
C13SC12C11172.6°176.7°
SC12C11C10171.6°177.9°
SC12C11C197.6°2.0°
C12SC13H14179.9°179.7°
C12C11C10C19179.2°180.0°
C12C11C10O1174.6°177.4°
C12C11C19O3161.6°180.0°
C12C11C19O219.2°0.0°
C10C11C19O319.2°0.0°
C10C11C19O2160.0°180.0°
O1C10C11C194.6°2.5°
C11C19O3O2179.2°180.0°
C11C19O3H20179.2°180.0°
O2C19O3H200.0°0.0°
H9C4C5H116.5°98.4°
H10C4C5H11129.0°23.9°
H11C5OH1259.9°60.7°
H11C5C2H6155.1°122.2°
H18C16H17H19120.0°120.0°
H7C3C2H643.6°146.2°
H8C3C2H6167.0°23.8°
H5C1H4H3120.0°120.0°
H2CHH1120.0°120.0°

225399

PDB entries from 2024-09-25

PDB statisticsPDBj update infoContact PDBjnumon