DJB
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C11 | C10 | sing | 1.51Å | 1.54Å | |
O10 | C10 | doub | 1.21Å | 1.23Å | |
C10 | N2 | sing | 1.35Å | 1.34Å | |
N2 | C2 | sing | 1.46Å | 1.48Å | |
C2 | C1 | sing | 1.53Å | 1.56Å | |
C2 | C3 | sing | 1.53Å | 1.52Å | |
O12 | C12 | doub | 1.21Å | 1.24Å | |
O3 | C12 | sing | 1.34Å | 1.42Å | |
O3 | C3 | sing | 1.45Å | 1.45Å | |
C1 | O1 | sing | 1.43Å | 1.42Å | |
C1 | O5 | sing | 1.43Å | 1.45Å | |
C12 | C13 | sing | 1.51Å | 1.53Å | |
C3 | C4 | sing | 1.53Å | 1.52Å | |
O4 | C4 | sing | 1.43Å | 1.47Å | |
O5 | C5 | sing | 1.43Å | 1.46Å | |
C4 | C5 | sing | 1.53Å | 1.56Å | |
C5 | C6 | sing | 1.51Å | 1.55Å | |
C6 | O6A | doub | 1.21Å | 1.26Å | |
C6 | O6B | sing | 1.34Å | 1.25Å | |
C11 | H1A | sing | 1.09Å | 1.10Å | |
C11 | H2A | sing | 1.09Å | 1.10Å | |
C11 | H3A | sing | 1.09Å | 1.10Å | |
N2 | H4A | sing | 0.97Å | 1.00Å | |
C2 | H2 | sing | 1.09Å | 1.10Å | |
C13 | H6 | sing | 1.09Å | 1.10Å | |
C13 | H7 | sing | 1.09Å | 1.10Å | |
C13 | H8 | sing | 1.09Å | 1.10Å | |
C3 | H3 | sing | 1.09Å | 1.10Å | |
C4 | H4 | sing | 1.09Å | 1.10Å | |
O4 | HO4 | sing | 0.97Å | 0.95Å | |
C5 | H5 | sing | 1.09Å | 1.10Å | |
O6B | HO6B | sing | 0.97Å | 0.95Å | |
C1 | H1 | sing | 1.09Å | 1.10Å | |
O1 | HO1 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C11 | C10 | O10 | 120.3° | 120.0° |
C11 | C10 | N2 | 116.9° | 120.0° |
C10 | C11 | H1A | 109.5° | 109.5° |
C10 | C11 | H2A | 109.5° | 109.5° |
C10 | C11 | H3A | 109.5° | 109.4° |
O10 | C10 | N2 | 122.9° | 120.0° |
C10 | N2 | C2 | 119.4° | 120.0° |
C10 | N2 | H4A | 120.3° | 120.0° |
N2 | C2 | C1 | 111.3° | 109.5° |
N2 | C2 | C3 | 110.0° | 109.5° |
C2 | N2 | H4A | 120.3° | 120.0° |
N2 | C2 | H2 | 108.3° | 109.6° |
C1 | C2 | C3 | 112.0° | 109.1° |
C2 | C1 | O1 | 110.8° | 109.5° |
C2 | C1 | O5 | 110.4° | 109.4° |
C1 | C2 | H2 | 107.4° | 109.5° |
C2 | C1 | H1 | 107.4° | 109.4° |
C2 | C3 | O3 | 106.7° | 109.5° |
C2 | C3 | C4 | 108.9° | 109.1° |
C3 | C2 | H2 | 107.8° | 109.6° |
C2 | C3 | H3 | 110.1° | 109.6° |
O12 | C12 | O3 | 117.8° | 120.0° |
O12 | C12 | C13 | 118.4° | 120.0° |
C12 | O3 | C3 | 119.7° | 117.0° |
O3 | C12 | C13 | 123.8° | 120.0° |
O3 | C3 | C4 | 109.6° | 109.5° |
O3 | C3 | H3 | 111.2° | 109.6° |
O1 | C1 | O5 | 110.2° | 109.5° |
O1 | C1 | H1 | 109.2° | 109.5° |
C1 | O1 | HO1 | 109.5° | 114.0° |
C1 | O5 | C5 | 113.3° | 114.1° |
O5 | C1 | H1 | 108.7° | 109.5° |
C12 | C13 | H6 | 109.5° | 109.5° |
C12 | C13 | H7 | 109.5° | 109.5° |
C12 | C13 | H8 | 109.5° | 109.4° |
C3 | C4 | O4 | 109.9° | 109.5° |
C3 | C4 | C5 | 108.1° | 109.2° |
C4 | C3 | H3 | 110.1° | 109.5° |
C3 | C4 | H4 | 108.4° | 109.5° |
O4 | C4 | C5 | 113.2° | 109.5° |
O4 | C4 | H4 | 109.1° | 109.6° |
C4 | O4 | HO4 | 109.5° | 114.0° |
O5 | C5 | C4 | 109.7° | 109.4° |
O5 | C5 | C6 | 109.5° | 109.5° |
O5 | C5 | H5 | 109.6° | 109.5° |
C4 | C5 | C6 | 111.2° | 109.5° |
C5 | C4 | H4 | 108.1° | 109.5° |
C4 | C5 | H5 | 108.3° | 109.4° |
C5 | C6 | O6A | 120.1° | 120.0° |
C5 | C6 | O6B | 120.1° | 120.0° |
C6 | C5 | H5 | 108.5° | 109.5° |
O6A | C6 | O6B | 119.8° | 120.0° |
C6 | O6B | HO6B | 109.5° | 117.0° |
H1A | C11 | H2A | 109.5° | 109.5° |
H1A | C11 | H3A | 109.5° | 109.5° |
H2A | C11 | H3A | 109.4° | 109.5° |
H6 | C13 | H7 | 109.4° | 109.5° |
H6 | C13 | H8 | 109.5° | 109.5° |
H7 | C13 | H8 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C11 | C10 | O10 | N2 | 179.6° | 180.0° |
C11 | C10 | N2 | C2 | 178.7° | 180.0° |
C10 | C11 | H1A | H2A | 120.0° | 120.0° |
C10 | C11 | H1A | H3A | 120.0° | 120.0° |
C10 | C11 | H2A | H3A | 120.0° | 119.9° |
C11 | C10 | N2 | H4A | 1.3° | 0.0° |
O10 | C10 | N2 | C2 | 1.0° | 0.1° |
O10 | C10 | C11 | H1A | 0.0° | 90.0° |
O10 | C10 | C11 | H2A | 120.0° | 30.0° |
O10 | C10 | C11 | H3A | 120.0° | 150.0° |
O10 | C10 | N2 | H4A | 179.0° | 180.0° |
C10 | N2 | C2 | H4A | 180.0° | 180.0° |
C10 | N2 | C2 | C1 | 90.5° | 85.0° |
C10 | N2 | C2 | C3 | 144.8° | 155.4° |
N2 | C10 | C11 | H1A | 179.7° | 90.0° |
N2 | C10 | C11 | H2A | 59.6° | 150.0° |
N2 | C10 | C11 | H3A | 60.3° | 30.0° |
C10 | N2 | C2 | H2 | 27.3° | 35.1° |
N2 | C2 | C1 | C3 | 123.6° | 119.9° |
N2 | C2 | C1 | H2 | 118.3° | 120.1° |
N2 | C2 | C3 | H2 | 117.8° | 120.2° |
N2 | C2 | C3 | O3 | 62.1° | 63.2° |
N2 | C2 | C1 | O1 | 53.7° | 57.5° |
N2 | C2 | C1 | O5 | 176.1° | 177.6° |
N2 | C2 | C3 | C4 | 179.6° | 176.9° |
N2 | C2 | C3 | H3 | 58.8° | 57.0° |
N2 | C2 | C1 | H1 | 65.5° | 62.5° |
C1 | C2 | C3 | H2 | 117.9° | 119.9° |
C1 | C2 | C3 | O3 | 173.7° | 176.8° |
C2 | C1 | O1 | O5 | 122.4° | 120.0° |
C2 | C1 | O1 | H1 | 118.2° | 120.0° |
C2 | C1 | O5 | H1 | 117.6° | 119.9° |
C1 | C2 | C3 | C4 | 55.4° | 57.0° |
C2 | C1 | O5 | C5 | 55.5° | 61.2° |
C1 | C2 | N2 | H4A | 89.5° | 95.0° |
C1 | C2 | C3 | H3 | 65.5° | 62.9° |
C2 | C1 | O1 | HO1 | 180.0° | 180.0° |
C2 | C3 | O3 | C12 | 153.2° | 150.0° |
C2 | C3 | O3 | C4 | 117.8° | 119.6° |
C2 | C3 | O3 | H3 | 120.1° | 120.2° |
C3 | C2 | C1 | O1 | 69.8° | 62.4° |
C3 | C2 | C1 | O5 | 52.5° | 57.6° |
C2 | C3 | C4 | H3 | 120.9° | 119.9° |
C2 | C3 | C4 | O4 | 65.1° | 62.9° |
C2 | C3 | C4 | C5 | 58.9° | 57.0° |
C3 | C2 | N2 | H4A | 35.2° | 24.7° |
C2 | C3 | C4 | H4 | 175.8° | 176.9° |
C3 | C2 | C1 | H1 | 170.9° | 177.6° |
O12 | C12 | O3 | C13 | 179.9° | 180.0° |
O12 | C12 | O3 | C3 | 173.2° | 0.0° |
O12 | C12 | C13 | H6 | 0.0° | 0.0° |
O12 | C12 | C13 | H7 | 120.0° | 120.0° |
O12 | C12 | C13 | H8 | 120.0° | 120.0° |
C12 | O3 | C3 | C4 | 89.0° | 90.4° |
O3 | C12 | C13 | H6 | 179.9° | 180.0° |
O3 | C12 | C13 | H7 | 59.9° | 60.0° |
O3 | C12 | C13 | H8 | 60.1° | 60.0° |
C12 | O3 | C3 | H3 | 33.0° | 29.8° |
C3 | O3 | C12 | C13 | 6.9° | 180.0° |
O3 | C3 | C4 | H3 | 122.7° | 120.3° |
O3 | C3 | C4 | O4 | 51.3° | 56.9° |
O3 | C3 | C4 | C5 | 175.3° | 176.8° |
O3 | C3 | C2 | H2 | 55.8° | 57.0° |
O3 | C3 | C4 | H4 | 67.8° | 63.3° |
O1 | C1 | O5 | H1 | 119.7° | 120.1° |
O1 | C1 | O5 | C5 | 67.2° | 58.8° |
O1 | C1 | C2 | H2 | 172.0° | 177.7° |
C1 | O5 | C5 | C4 | 61.0° | 61.1° |
C1 | O5 | C5 | C6 | 176.6° | 178.9° |
O5 | C1 | C2 | H2 | 65.6° | 62.3° |
C1 | O5 | C5 | H5 | 57.8° | 58.8° |
O5 | C1 | O1 | HO1 | 57.6° | 60.0° |
C12 | C13 | H6 | H7 | 120.0° | 120.0° |
C12 | C13 | H6 | H8 | 120.0° | 120.0° |
C12 | C13 | H7 | H8 | 120.0° | 120.0° |
C3 | C4 | O4 | C5 | 120.9° | 119.7° |
C3 | C4 | O4 | H4 | 118.7° | 120.2° |
C3 | C4 | C5 | O5 | 61.6° | 57.6° |
C3 | C4 | C5 | H4 | 117.1° | 119.9° |
C3 | C4 | C5 | C6 | 177.1° | 177.6° |
C4 | C3 | C2 | H2 | 62.5° | 62.9° |
C3 | C4 | O4 | HO4 | 180.0° | 180.0° |
C3 | C4 | C5 | H5 | 58.0° | 62.4° |
O4 | C4 | C5 | O5 | 60.3° | 62.3° |
O4 | C4 | C5 | H4 | 120.9° | 120.1° |
O4 | C4 | C5 | C6 | 61.0° | 57.7° |
O4 | C4 | C3 | H3 | 174.0° | 177.2° |
O4 | C4 | C5 | H5 | 179.9° | 177.7° |
O5 | C5 | C4 | C6 | 121.3° | 120.0° |
O5 | C5 | C4 | H5 | 119.6° | 120.0° |
O5 | C5 | C6 | H5 | 119.5° | 120.1° |
O5 | C5 | C6 | O6A | 6.4° | 4.9° |
O5 | C5 | C6 | O6B | 175.2° | 175.0° |
O5 | C5 | C4 | H4 | 178.7° | 177.5° |
C5 | O5 | C1 | H1 | 173.1° | 178.9° |
C4 | C5 | C6 | H5 | 119.0° | 120.0° |
C4 | C5 | C6 | O6A | 127.8° | 115.0° |
C4 | C5 | C6 | O6B | 53.7° | 65.0° |
C5 | C4 | C3 | H3 | 62.0° | 62.9° |
C5 | C4 | O4 | HO4 | 59.0° | 60.3° |
C5 | C6 | O6A | O6B | 178.5° | 180.0° |
C6 | C5 | C4 | H4 | 60.0° | 62.5° |
C5 | C6 | O6B | HO6B | 178.4° | 179.9° |
O6A | C6 | C5 | H5 | 113.1° | 125.0° |
O6A | C6 | O6B | HO6B | 0.0° | 0.0° |
O6B | C6 | C5 | H5 | 65.3° | 55.0° |
H1A | C11 | H2A | H3A | 120.0° | 120.0° |
H4A | N2 | C2 | H2 | 152.7° | 144.9° |
H2 | C2 | C3 | H3 | 176.6° | 177.2° |
H2 | C2 | C1 | H1 | 52.8° | 57.7° |
H6 | C13 | H7 | H8 | 120.0° | 120.0° |
H3 | C3 | C4 | H4 | 54.9° | 57.0° |
H4 | C4 | O4 | HO4 | 61.3° | 59.9° |
H4 | C4 | C5 | H5 | 59.1° | 57.5° |
H1 | C1 | O1 | HO1 | 61.8° | 60.0° |