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DJB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C11C10sing1.51Å1.54Å
O10C10doub1.21Å1.23Å
C10N2sing1.35Å1.34Å
N2C2sing1.46Å1.48Å
C2C1sing1.53Å1.56Å
C2C3sing1.53Å1.52Å
O12C12doub1.21Å1.24Å
O3C12sing1.34Å1.42Å
O3C3sing1.45Å1.45Å
C1O1sing1.43Å1.42Å
C1O5sing1.43Å1.45Å
C12C13sing1.51Å1.53Å
C3C4sing1.53Å1.52Å
O4C4sing1.43Å1.47Å
O5C5sing1.43Å1.46Å
C4C5sing1.53Å1.56Å
C5C6sing1.51Å1.55Å
C6O6Adoub1.21Å1.26Å
C6O6Bsing1.34Å1.25Å
C11H1Asing1.09Å1.10Å
C11H2Asing1.09Å1.10Å
C11H3Asing1.09Å1.10Å
N2H4Asing0.97Å1.00Å
C2H2sing1.09Å1.10Å
C13H6sing1.09Å1.10Å
C13H7sing1.09Å1.10Å
C13H8sing1.09Å1.10Å
C3H3sing1.09Å1.10Å
C4H4sing1.09Å1.10Å
O4HO4sing0.97Å0.95Å
C5H5sing1.09Å1.10Å
O6BHO6Bsing0.97Å0.95Å
C1H1sing1.09Å1.10Å
O1HO1sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C11C10O10120.3°120.0°
C11C10N2116.9°120.0°
C10C11H1A109.5°109.5°
C10C11H2A109.5°109.5°
C10C11H3A109.5°109.4°
O10C10N2122.9°120.0°
C10N2C2119.4°120.0°
C10N2H4A120.3°120.0°
N2C2C1111.3°109.5°
N2C2C3110.0°109.5°
C2N2H4A120.3°120.0°
N2C2H2108.3°109.6°
C1C2C3112.0°109.1°
C2C1O1110.8°109.5°
C2C1O5110.4°109.4°
C1C2H2107.4°109.5°
C2C1H1107.4°109.4°
C2C3O3106.7°109.5°
C2C3C4108.9°109.1°
C3C2H2107.8°109.6°
C2C3H3110.1°109.6°
O12C12O3117.8°120.0°
O12C12C13118.4°120.0°
C12O3C3119.7°117.0°
O3C12C13123.8°120.0°
O3C3C4109.6°109.5°
O3C3H3111.2°109.6°
O1C1O5110.2°109.5°
O1C1H1109.2°109.5°
C1O1HO1109.5°114.0°
C1O5C5113.3°114.1°
O5C1H1108.7°109.5°
C12C13H6109.5°109.5°
C12C13H7109.5°109.5°
C12C13H8109.5°109.4°
C3C4O4109.9°109.5°
C3C4C5108.1°109.2°
C4C3H3110.1°109.5°
C3C4H4108.4°109.5°
O4C4C5113.2°109.5°
O4C4H4109.1°109.6°
C4O4HO4109.5°114.0°
O5C5C4109.7°109.4°
O5C5C6109.5°109.5°
O5C5H5109.6°109.5°
C4C5C6111.2°109.5°
C5C4H4108.1°109.5°
C4C5H5108.3°109.4°
C5C6O6A120.1°120.0°
C5C6O6B120.1°120.0°
C6C5H5108.5°109.5°
O6AC6O6B119.8°120.0°
C6O6BHO6B109.5°117.0°
H1AC11H2A109.5°109.5°
H1AC11H3A109.5°109.5°
H2AC11H3A109.4°109.5°
H6C13H7109.4°109.5°
H6C13H8109.5°109.5°
H7C13H8109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C11C10O10N2179.6°180.0°
C11C10N2C2178.7°180.0°
C10C11H1AH2A120.0°120.0°
C10C11H1AH3A120.0°120.0°
C10C11H2AH3A120.0°119.9°
C11C10N2H4A1.3°0.0°
O10C10N2C21.0°0.1°
O10C10C11H1A0.0°90.0°
O10C10C11H2A120.0°30.0°
O10C10C11H3A120.0°150.0°
O10C10N2H4A179.0°180.0°
C10N2C2H4A180.0°180.0°
C10N2C2C190.5°85.0°
C10N2C2C3144.8°155.4°
N2C10C11H1A179.7°90.0°
N2C10C11H2A59.6°150.0°
N2C10C11H3A60.3°30.0°
C10N2C2H227.3°35.1°
N2C2C1C3123.6°119.9°
N2C2C1H2118.3°120.1°
N2C2C3H2117.8°120.2°
N2C2C3O362.1°63.2°
N2C2C1O153.7°57.5°
N2C2C1O5176.1°177.6°
N2C2C3C4179.6°176.9°
N2C2C3H358.8°57.0°
N2C2C1H165.5°62.5°
C1C2C3H2117.9°119.9°
C1C2C3O3173.7°176.8°
C2C1O1O5122.4°120.0°
C2C1O1H1118.2°120.0°
C2C1O5H1117.6°119.9°
C1C2C3C455.4°57.0°
C2C1O5C555.5°61.2°
C1C2N2H4A89.5°95.0°
C1C2C3H365.5°62.9°
C2C1O1HO1180.0°180.0°
C2C3O3C12153.2°150.0°
C2C3O3C4117.8°119.6°
C2C3O3H3120.1°120.2°
C3C2C1O169.8°62.4°
C3C2C1O552.5°57.6°
C2C3C4H3120.9°119.9°
C2C3C4O465.1°62.9°
C2C3C4C558.9°57.0°
C3C2N2H4A35.2°24.7°
C2C3C4H4175.8°176.9°
C3C2C1H1170.9°177.6°
O12C12O3C13179.9°180.0°
O12C12O3C3173.2°0.0°
O12C12C13H60.0°0.0°
O12C12C13H7120.0°120.0°
O12C12C13H8120.0°120.0°
C12O3C3C489.0°90.4°
O3C12C13H6179.9°180.0°
O3C12C13H759.9°60.0°
O3C12C13H860.1°60.0°
C12O3C3H333.0°29.8°
C3O3C12C136.9°180.0°
O3C3C4H3122.7°120.3°
O3C3C4O451.3°56.9°
O3C3C4C5175.3°176.8°
O3C3C2H255.8°57.0°
O3C3C4H467.8°63.3°
O1C1O5H1119.7°120.1°
O1C1O5C567.2°58.8°
O1C1C2H2172.0°177.7°
C1O5C5C461.0°61.1°
C1O5C5C6176.6°178.9°
O5C1C2H265.6°62.3°
C1O5C5H557.8°58.8°
O5C1O1HO157.6°60.0°
C12C13H6H7120.0°120.0°
C12C13H6H8120.0°120.0°
C12C13H7H8120.0°120.0°
C3C4O4C5120.9°119.7°
C3C4O4H4118.7°120.2°
C3C4C5O561.6°57.6°
C3C4C5H4117.1°119.9°
C3C4C5C6177.1°177.6°
C4C3C2H262.5°62.9°
C3C4O4HO4180.0°180.0°
C3C4C5H558.0°62.4°
O4C4C5O560.3°62.3°
O4C4C5H4120.9°120.1°
O4C4C5C661.0°57.7°
O4C4C3H3174.0°177.2°
O4C4C5H5179.9°177.7°
O5C5C4C6121.3°120.0°
O5C5C4H5119.6°120.0°
O5C5C6H5119.5°120.1°
O5C5C6O6A6.4°4.9°
O5C5C6O6B175.2°175.0°
O5C5C4H4178.7°177.5°
C5O5C1H1173.1°178.9°
C4C5C6H5119.0°120.0°
C4C5C6O6A127.8°115.0°
C4C5C6O6B53.7°65.0°
C5C4C3H362.0°62.9°
C5C4O4HO459.0°60.3°
C5C6O6AO6B178.5°180.0°
C6C5C4H460.0°62.5°
C5C6O6BHO6B178.4°179.9°
O6AC6C5H5113.1°125.0°
O6AC6O6BHO6B0.0°0.0°
O6BC6C5H565.3°55.0°
H1AC11H2AH3A120.0°120.0°
H4AN2C2H2152.7°144.9°
H2C2C3H3176.6°177.2°
H2C2C1H152.8°57.7°
H6C13H7H8120.0°120.0°
H3C3C4H454.9°57.0°
H4C4O4HO461.3°59.9°
H4C4C5H559.1°57.5°
H1C1O1HO161.8°60.0°

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PDB entries from 2024-10-09

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