Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

DIY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.47Å1.46Å
N1C6sing1.47Å1.45Å
N1HN1sing1.01Å1.02Å
C2C3sing1.53Å1.52Å
C2H21sing1.09Å1.11Å
C2H22sing1.09Å1.11Å
C6C5sing1.53Å1.49Å
C6H61sing1.09Å1.12Å
C6H62sing1.09Å1.11Å
C3C4sing1.53Å1.52Å
C3H31sing1.09Å1.11Å
C3H32sing1.09Å1.11Å
C4C5sing1.53Å1.54Å
C4H41sing1.09Å1.11Å
C4H42sing1.09Å1.11Å
C5C1'sing1.53Å1.51Å
C5H5sing1.09Å1.11Å
C1'C2'sing1.53Å1.51Å
C1'H1'1sing1.09Å1.11Å
C1'H1'2sing1.09Å1.12Å
C2'C3'sing1.53Å1.50Å
C2'H2'1sing1.09Å1.12Å
C2'H2'2sing1.09Å1.11Å
C3'C4'sing1.53Å1.50Å
C3'H3'1sing1.09Å1.11Å
C3'H3'2sing1.09Å1.11Å
C4'H4'1sing1.09Å1.12Å
C4'H4'2sing1.09Å1.12Å
C4'H4'3sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6115.9°107.4°
C2N1HN1109.9°106.7°
N1C2C3104.8°109.8°
N1C2H21113.9°109.4°
N1C2H22113.9°109.5°
C6N1HN1109.8°106.7°
N1C6C5109.2°109.8°
N1C6H61112.2°109.4°
N1C6H62112.3°109.4°
C3C2H21114.0°109.4°
C3C2H22114.0°109.4°
C2C3C4109.3°109.2°
C2C3H31112.3°109.6°
C2C3H32112.2°109.4°
H21C2H2296.5°109.4°
C5C6H61112.3°109.5°
C5C6H62112.3°109.3°
C6C5C4107.3°109.2°
C6C5C1'112.4°109.6°
C6C5H5111.2°109.5°
H61C6H6298.1°109.3°
C4C3H31112.3°109.6°
C4C3H32112.3°109.5°
C3C4C5116.9°109.0°
C3C4H41109.5°109.5°
C3C4H42109.5°109.6°
H31C3H3298.1°109.5°
C5C4H41109.5°109.5°
C5C4H42109.5°109.6°
C4C5C1'115.1°109.5°
C4C5H5108.2°109.5°
H41C4H42100.7°109.6°
C1'C5H5102.6°109.5°
C5C1'C2'108.5°109.5°
C5C1'H1'1112.6°109.4°
C5C1'H1'2112.6°109.5°
C2'C1'H1'1112.6°109.5°
C2'C1'H1'2112.6°109.5°
C1'C2'C3'111.5°109.5°
C1'C2'H2'1111.4°109.5°
C1'C2'H2'2111.4°109.5°
H1'1C1'H1'297.8°109.5°
C3'C2'H2'1111.4°109.4°
C3'C2'H2'2111.5°109.5°
C2'C3'C4'106.5°109.6°
C2'C3'H3'1113.3°109.5°
C2'C3'H3'2113.3°109.5°
H2'1C2'H2'298.9°109.4°
C4'C3'H3'1113.3°109.5°
C4'C3'H3'2113.3°109.5°
C3'C4'H4'1106.6°109.6°
C3'C4'H4'2113.3°109.5°
C3'C4'H4'3113.4°109.5°
H3'1C3'H3'297.2°109.4°
H4'1C4'H4'2113.3°109.5°
H4'1C4'H4'3113.3°109.4°
H4'2C4'H4'397.1°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6HN1125.3°114.1°
N1C2C3H21125.2°120.0°
N1C2C3H22125.2°120.1°
N1C2H21H22119.8°119.9°
C2N1C6C566.8°65.5°
C2N1C6H61168.0°174.2°
C2N1C6H6258.5°54.5°
N1C2C3C454.5°61.3°
N1C2C3H31179.8°178.7°
N1C2C3H3270.8°58.6°
C6N1C2C366.3°65.6°
C6N1C2H2159.0°54.5°
C6N1C2H22168.4°174.3°
N1C6C5H61125.2°120.2°
N1C6C5H62125.3°120.1°
N1C6H61H62118.2°119.8°
N1C6C5C451.8°61.2°
N1C6C5C1'75.7°178.8°
N1C6C5H5169.9°58.6°
HN1N1C2C3168.4°179.7°
HN1N1C2H2166.3°59.7°
HN1N1C2H2243.2°60.2°
HN1N1C6C5167.9°179.6°
HN1N1C6H6142.7°60.1°
HN1N1C6H6266.7°59.6°
C3C2H21H22119.9°119.8°
C2C3C4H31125.3°120.0°
C2C3C4H32125.2°119.8°
C2C3H31H32118.2°120.1°
C2C3C4C552.3°55.5°
C2C3C4H4173.0°64.3°
C2C3C4H42177.5°175.4°
H21C2C3C470.7°58.7°
H21C2C3H3154.6°61.3°
H21C2C3H32164.0°178.6°
H22C2C3C4179.7°178.5°
H22C2C3H3155.0°58.5°
H22C2C3H3254.5°61.6°
C5C6H61H62118.3°119.7°
C6C5C4C349.4°55.5°
C6C5C4C1'125.9°120.1°
C6C5C4H5120.0°119.9°
C6C5C4H4175.8°64.3°
C6C5C4H42174.6°175.4°
C6C5C1'H5119.5°120.1°
C6C5C1'C2'176.5°60.1°
C6C5C1'H1'158.2°59.9°
C6C5C1'H1'251.2°179.9°
H61C6C5C4177.0°178.6°
H61C6C5C1'49.5°58.6°
H61C6C5H564.9°61.6°
H62C6C5C473.5°58.8°
H62C6C5C1'159.0°61.2°
H62C6C5H544.6°178.7°
C4C3H31H32118.2°120.1°
C3C4C5H41125.2°119.8°
C3C4C5H42125.2°119.9°
C3C4H41H42115.3°120.3°
C3C4C5C1'76.5°175.5°
C3C4C5H5169.4°64.4°
H31C3C4C5177.6°175.5°
H31C3C4H4152.3°55.7°
H31C3C4H4257.2°64.6°
H32C3C4C573.0°64.3°
H32C3C4H41161.8°175.9°
H32C3C4H4252.3°55.6°
C5C4H41H42115.3°120.3°
C4C5C1'H5117.3°120.0°
C4C5C1'C2'60.3°179.9°
C4C5C1'H1'165.0°60.0°
C4C5C1'H1'2174.4°60.1°
H41C4C5C1'158.3°55.7°
H41C4C5H544.2°175.8°
H42C4C5C1'48.7°64.6°
H42C4C5H565.3°55.4°
C5C1'C2'H1'1125.3°119.9°
C5C1'C2'H1'2125.3°120.0°
C5C1'H1'1H1'2118.5°120.0°
C5C1'C2'C3'161.9°180.0°
C5C1'C2'H2'172.9°60.1°
C5C1'C2'H2'236.6°59.9°
H5C5C1'C2'57.0°60.1°
H5C5C1'H1'1177.7°180.0°
H5C5C1'H1'268.3°60.0°
C2'C1'H1'1H1'2118.5°120.0°
C1'C2'C3'H2'1125.3°120.0°
C1'C2'C3'H2'2125.2°120.1°
C1'C2'H2'1H2'2117.3°120.0°
C1'C2'C3'C4'62.1°180.0°
C1'C2'C3'H3'1172.6°60.0°
C1'C2'C3'H3'263.1°59.9°
H1'1C1'C2'C3'36.6°60.0°
H1'1C1'C2'H2'1161.8°180.0°
H1'1C1'C2'H2'288.7°60.0°
H1'2C1'C2'C3'72.8°60.0°
H1'2C1'C2'H2'152.4°60.0°
H1'2C1'C2'H2'2161.9°180.0°
C3'C2'H2'1H2'2117.4°120.0°
C2'C3'C4'H3'1125.3°120.1°
C2'C3'C4'H3'2125.3°120.1°
C2'C3'H3'1H3'2119.3°120.0°
C2'C3'C4'H4'1180.0°180.0°
C2'C3'C4'H4'254.8°60.0°
C2'C3'C4'H4'354.7°60.0°
H2'1C2'C3'C4'63.1°60.0°
H2'1C2'C3'H3'162.1°180.0°
H2'1C2'C3'H3'2171.7°60.1°
H2'2C2'C3'C4'172.6°59.9°
H2'2C2'C3'H3'147.4°60.1°
H2'2C2'C3'H3'262.2°180.0°
C4'C3'H3'1H3'2119.2°119.9°
C3'C4'H4'1H4'2125.3°120.1°
C3'C4'H4'1H4'3125.3°120.0°
C3'C4'H4'2H4'3119.3°120.0°
H3'1C3'C4'H4'154.7°60.0°
H3'1C3'C4'H4'2180.0°60.1°
H3'1C3'C4'H4'370.5°180.0°
H3'2C3'C4'H4'154.7°59.9°
H3'2C3'C4'H4'270.5°179.9°
H3'2C3'C4'H4'3180.0°60.1°
H4'1C4'H4'2H4'3119.2°119.9°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon