DIX
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CM | sing | 1.47Å | 1.45Å | |
N | C3 | sing | 1.47Å | 1.46Å | |
N | HN | sing | 1.01Å | 1.02Å | |
CM | HM1 | sing | 1.09Å | 1.12Å | |
CM | HM2 | sing | 1.09Å | 1.11Å | |
CM | HM3 | sing | 1.09Å | 1.11Å | |
C3 | C2 | sing | 1.53Å | 1.55Å | |
C3 | H31 | sing | 1.09Å | 1.12Å | |
C3 | H32 | sing | 1.09Å | 1.11Å | |
C2 | C1 | sing | 1.53Å | 1.51Å | |
C2 | H21 | sing | 1.09Å | 1.12Å | |
C2 | H22 | sing | 1.09Å | 1.11Å | |
C1 | C1' | sing | 1.53Å | 1.49Å | |
C1 | H11 | sing | 1.09Å | 1.12Å | |
C1 | H12 | sing | 1.09Å | 1.12Å | |
C1' | C2' | sing | 1.54Å | 1.47Å | |
C1' | C5' | sing | 1.54Å | 1.50Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
C2' | C3' | sing | 1.54Å | 1.49Å | |
C2' | H2'1 | sing | 1.09Å | 1.12Å | |
C2' | H2'2 | sing | 1.09Å | 1.12Å | |
C5' | C4' | sing | 1.55Å | 1.52Å | |
C5' | H5'1 | sing | 1.09Å | 1.11Å | |
C5' | H5'2 | sing | 1.09Å | 1.11Å | |
C4' | C3' | sing | 1.55Å | 1.48Å | |
C4' | H4'1 | sing | 1.09Å | 1.11Å | |
C4' | H4'2 | sing | 1.09Å | 1.11Å | |
C3' | H3'1 | sing | 1.09Å | 1.12Å | |
C3' | H3'2 | sing | 1.09Å | 1.11Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CM | N | C3 | 113.7° | 106.7° |
CM | N | HN | 110.7° | 106.7° |
N | CM | HM1 | 113.6° | 109.6° |
N | CM | HM2 | 110.6° | 109.5° |
N | CM | HM3 | 110.7° | 109.4° |
C3 | N | HN | 110.7° | 106.7° |
N | C3 | C2 | 110.2° | 109.5° |
N | C3 | H31 | 111.9° | 109.5° |
N | C3 | H32 | 112.0° | 109.4° |
HM1 | CM | HM2 | 110.7° | 109.5° |
HM1 | CM | HM3 | 110.7° | 109.4° |
HM2 | CM | HM3 | 99.7° | 109.5° |
C2 | C3 | H31 | 111.9° | 109.5° |
C2 | C3 | H32 | 112.0° | 109.4° |
C3 | C2 | C1 | 119.1° | 109.5° |
C3 | C2 | H21 | 108.8° | 109.5° |
C3 | C2 | H22 | 108.7° | 109.5° |
H31 | C3 | H32 | 98.5° | 109.5° |
C1 | C2 | H21 | 108.7° | 109.5° |
C1 | C2 | H22 | 108.7° | 109.4° |
C2 | C1 | C1' | 110.6° | 109.5° |
C2 | C1 | H11 | 111.8° | 109.5° |
C2 | C1 | H12 | 111.8° | 109.4° |
H21 | C2 | H22 | 101.3° | 109.4° |
C1' | C1 | H11 | 111.8° | 109.5° |
C1' | C1 | H12 | 111.8° | 109.4° |
C1 | C1' | C2' | 117.0° | 110.1° |
C1 | C1' | C5' | 114.3° | 110.1° |
C1 | C1' | H1' | 99.3° | 110.0° |
H11 | C1 | H12 | 98.6° | 109.5° |
C2' | C1' | C5' | 106.7° | 106.6° |
C2' | C1' | H1' | 108.1° | 110.0° |
C1' | C2' | C3' | 99.2° | 106.6° |
C1' | C2' | H2'1 | 116.2° | 110.1° |
C1' | C2' | H2'2 | 116.2° | 110.0° |
C5' | C1' | H1' | 111.1° | 110.0° |
C1' | C5' | C4' | 102.5° | 104.2° |
C1' | C5' | H5'1 | 114.8° | 110.5° |
C1' | C5' | H5'2 | 114.8° | 110.5° |
C3' | C2' | H2'1 | 116.2° | 110.0° |
C3' | C2' | H2'2 | 116.2° | 110.1° |
C2' | C3' | C4' | 103.3° | 104.2° |
C2' | C3' | H3'1 | 114.5° | 110.5° |
C2' | C3' | H3'2 | 114.6° | 110.4° |
H2'1 | C2' | H2'2 | 94.2° | 110.0° |
C4' | C5' | H5'1 | 114.9° | 110.6° |
C4' | C5' | H5'2 | 114.9° | 110.4° |
C5' | C4' | C3' | 106.1° | 102.7° |
C5' | C4' | H4'1 | 113.5° | 110.9° |
C5' | C4' | H4'2 | 113.5° | 110.7° |
H5'1 | C5' | H5'2 | 95.6° | 110.6° |
C3' | C4' | H4'1 | 113.5° | 110.7° |
C3' | C4' | H4'2 | 113.4° | 110.7° |
C4' | C3' | H3'1 | 114.6° | 110.5° |
C4' | C3' | H3'2 | 114.6° | 110.5° |
H4'1 | C4' | H4'2 | 97.0° | 110.8° |
H3'1 | C3' | H3'2 | 95.9° | 110.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CM | N | C3 | HN | 125.3° | 113.8° |
N | CM | HM1 | HM2 | 125.2° | 120.1° |
N | CM | HM1 | HM3 | 125.2° | 120.0° |
N | CM | HM2 | HM3 | 116.5° | 120.0° |
CM | N | C3 | C2 | 76.0° | 180.0° |
CM | N | C3 | H31 | 158.8° | 59.9° |
CM | N | C3 | H32 | 49.3° | 60.1° |
C3 | N | CM | HM1 | 180.0° | 179.9° |
C3 | N | CM | HM2 | 54.7° | 60.0° |
C3 | N | CM | HM3 | 54.8° | 60.0° |
N | C3 | C2 | H31 | 125.2° | 120.1° |
N | C3 | C2 | H32 | 125.3° | 119.9° |
N | C3 | H31 | H32 | 117.9° | 120.0° |
N | C3 | C2 | C1 | 70.8° | 180.0° |
N | C3 | C2 | H21 | 164.0° | 59.9° |
N | C3 | C2 | H22 | 54.5° | 60.0° |
HN | N | CM | HM1 | 54.7° | 66.2° |
HN | N | CM | HM2 | 180.0° | 53.8° |
HN | N | CM | HM3 | 70.5° | 173.8° |
HN | N | C3 | C2 | 158.7° | 66.1° |
HN | N | C3 | H31 | 33.5° | 173.8° |
HN | N | C3 | H32 | 76.0° | 53.8° |
HM1 | CM | HM2 | HM3 | 116.6° | 119.9° |
C2 | C3 | H31 | H32 | 117.9° | 119.9° |
C3 | C2 | C1 | H21 | 125.3° | 120.0° |
C3 | C2 | C1 | H22 | 125.3° | 120.0° |
C3 | C2 | H21 | H22 | 114.4° | 120.0° |
C3 | C2 | C1 | C1' | 176.7° | 180.0° |
C3 | C2 | C1 | H11 | 51.4° | 60.0° |
C3 | C2 | C1 | H12 | 58.1° | 60.1° |
H31 | C3 | C2 | C1 | 54.5° | 59.9° |
H31 | C3 | C2 | H21 | 70.8° | 180.0° |
H31 | C3 | C2 | H22 | 179.7° | 60.1° |
H32 | C3 | C2 | C1 | 163.9° | 60.0° |
H32 | C3 | C2 | H21 | 38.7° | 60.0° |
H32 | C3 | C2 | H22 | 70.8° | 180.0° |
C1 | C2 | H21 | H22 | 114.4° | 120.0° |
C2 | C1 | C1' | H11 | 125.3° | 120.1° |
C2 | C1 | C1' | H12 | 125.3° | 119.9° |
C2 | C1 | H11 | H12 | 117.7° | 120.0° |
C2 | C1 | C1' | C2' | 176.4° | 180.0° |
C2 | C1 | C1' | C5' | 50.6° | 62.8° |
C2 | C1 | C1' | H1' | 67.8° | 58.6° |
H21 | C2 | C1 | C1' | 58.1° | 59.9° |
H21 | C2 | C1 | H11 | 176.6° | 180.0° |
H21 | C2 | C1 | H12 | 67.2° | 60.0° |
H22 | C2 | C1 | C1' | 51.4° | 60.0° |
H22 | C2 | C1 | H11 | 73.9° | 60.1° |
H22 | C2 | C1 | H12 | 176.7° | 179.9° |
C1' | C1 | H11 | H12 | 117.7° | 119.9° |
C1 | C1' | C2' | C5' | 129.5° | 119.3° |
C1 | C1' | C2' | H1' | 110.9° | 121.4° |
C1 | C1' | C5' | H1' | 111.4° | 121.4° |
C1 | C1' | C2' | C3' | 172.9° | 119.4° |
C1 | C1' | C2' | H2'1 | 47.6° | 121.3° |
C1 | C1' | C2' | H2'2 | 61.8° | 0.0° |
C1 | C1' | C5' | C4' | 154.9° | 143.0° |
C1 | C1' | C5' | H5'1 | 79.8° | 24.2° |
C1 | C1' | C5' | H5'2 | 29.6° | 98.4° |
H11 | C1 | C1' | C2' | 51.1° | 59.9° |
H11 | C1 | C1' | C5' | 74.7° | 177.1° |
H11 | C1 | C1' | H1' | 166.9° | 61.5° |
H12 | C1 | C1' | C2' | 58.4° | 60.0° |
H12 | C1 | C1' | C5' | 175.9° | 57.2° |
H12 | C1 | C1' | H1' | 57.5° | 178.6° |
C2' | C1' | C5' | H1' | 117.6° | 119.2° |
C1' | C2' | C3' | H2'1 | 125.3° | 119.3° |
C1' | C2' | C3' | H2'2 | 125.3° | 119.2° |
C1' | C2' | H2'1 | H2'2 | 121.9° | 121.3° |
C2' | C1' | C5' | C4' | 24.0° | 23.6° |
C2' | C1' | C5' | H5'1 | 149.2° | 95.1° |
C2' | C1' | C5' | H5'2 | 101.3° | 142.2° |
C1' | C2' | C3' | C4' | 45.8° | 23.6° |
C1' | C2' | C3' | H3'1 | 171.0° | 142.4° |
C1' | C2' | C3' | H3'2 | 79.5° | 95.0° |
C5' | C1' | C2' | C3' | 43.4° | 0.0° |
C5' | C1' | C2' | H2'1 | 81.9° | 119.3° |
C5' | C1' | C2' | H2'2 | 168.7° | 119.3° |
C1' | C5' | C4' | H5'1 | 125.2° | 118.7° |
C1' | C5' | C4' | H5'2 | 125.2° | 118.6° |
C1' | C5' | H5'1 | H5'2 | 120.7° | 122.6° |
C1' | C5' | C4' | C3' | 5.4° | 38.0° |
C1' | C5' | C4' | H4'1 | 130.7° | 80.3° |
C1' | C5' | C4' | H4'2 | 119.8° | 156.2° |
H1' | C1' | C2' | C3' | 76.2° | 119.3° |
H1' | C1' | C2' | H2'1 | 158.5° | 0.0° |
H1' | C1' | C2' | H2'2 | 49.1° | 121.4° |
H1' | C1' | C5' | C4' | 93.7° | 95.6° |
H1' | C1' | C5' | H5'1 | 31.6° | 145.6° |
H1' | C1' | C5' | H5'2 | 141.1° | 23.0° |
C3' | C2' | H2'1 | H2'2 | 122.0° | 121.5° |
C2' | C3' | C4' | C5' | 32.2° | 38.0° |
C2' | C3' | C4' | H3'1 | 125.2° | 118.7° |
C2' | C3' | C4' | H3'2 | 125.3° | 118.6° |
C2' | C3' | C4' | H4'1 | 157.5° | 80.4° |
C2' | C3' | C4' | H4'2 | 93.1° | 156.3° |
C2' | C3' | H3'1 | H3'2 | 120.4° | 122.6° |
H2'1 | C2' | C3' | C4' | 79.5° | 95.7° |
H2'1 | C2' | C3' | H3'1 | 45.7° | 23.0° |
H2'1 | C2' | C3' | H3'2 | 155.2° | 145.6° |
H2'2 | C2' | C3' | C4' | 171.1° | 142.9° |
H2'2 | C2' | C3' | H3'1 | 63.7° | 98.4° |
H2'2 | C2' | C3' | H3'2 | 45.8° | 24.2° |
C4' | C5' | H5'1 | H5'2 | 120.8° | 122.6° |
C5' | C4' | C3' | H4'1 | 125.3° | 118.4° |
C5' | C4' | C3' | H4'2 | 125.3° | 118.3° |
C5' | C4' | H4'1 | H4'2 | 119.4° | 123.4° |
C5' | C4' | C3' | H3'1 | 157.4° | 156.7° |
C5' | C4' | C3' | H3'2 | 93.1° | 80.7° |
H5'1 | C5' | C4' | C3' | 119.8° | 80.7° |
H5'1 | C5' | C4' | H4'1 | 5.4° | 161.0° |
H5'1 | C5' | C4' | H4'2 | 115.0° | 37.5° |
H5'2 | C5' | C4' | C3' | 130.7° | 156.6° |
H5'2 | C5' | C4' | H4'1 | 104.1° | 38.3° |
H5'2 | C5' | C4' | H4'2 | 5.5° | 85.1° |
C3' | C4' | H4'1 | H4'2 | 119.3° | 123.3° |
C4' | C3' | H3'1 | H3'2 | 120.5° | 122.6° |
H4'1 | C4' | C3' | H3'1 | 77.3° | 38.3° |
H4'1 | C4' | C3' | H3'2 | 32.2° | 160.9° |
H4'2 | C4' | C3' | H3'1 | 32.2° | 85.0° |
H4'2 | C4' | C3' | H3'2 | 141.7° | 37.6° |