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SummaryGeometryRelated PDB entries

DIP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
NC1sing1.47Å1.47Å
NC1'sing1.47Å1.47Å
NHNsing1.01Å1.02Å
C1C2sing1.53Å1.52Å
C1H11sing1.09Å1.11Å
C1H12sing1.09Å1.11Å
C2C3sing1.53Å1.50Å
C2H21sing1.09Å1.12Å
C2H22sing1.09Å1.12Å
C3C4sing1.53Å1.52Å
C3H31sing1.09Å1.11Å
C3H32sing1.09Å1.11Å
C4C5sing1.53Å1.53Å
C4H41sing1.09Å1.12Å
C4H42sing1.09Å1.11Å
C5H51sing1.09Å1.11Å
C5H52sing1.09Å1.11Å
C5H53sing1.09Å1.12Å
C1'C2'sing1.53Å1.54Å
C1'H1'1sing1.09Å1.12Å
C1'H1'2sing1.09Å1.11Å
C2'C3'sing1.53Å1.54Å
C2'H2'1sing1.09Å1.11Å
C2'H2'2sing1.09Å1.11Å
C3'C4'sing1.53Å1.50Å
C3'H3'1sing1.09Å1.12Å
C3'H3'2sing1.09Å1.12Å
C4'C5'sing1.53Å1.51Å
C4'H4'1sing1.09Å1.12Å
C4'H4'2sing1.09Å1.11Å
C5'H5'1sing1.09Å1.11Å
C5'H5'2sing1.09Å1.12Å
C5'H5'3sing1.09Å1.12Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C1NC1'120.0°106.7°
C1NHN108.5°106.7°
NC1C2102.3°109.5°
NC1H11114.9°109.5°
NC1H12114.9°109.5°
C1'NHN108.4°106.7°
NC1'C2'108.6°109.5°
NC1'H1'1112.5°109.5°
NC1'H1'2112.6°109.5°
C2C1H11115.0°109.5°
C2C1H12115.0°109.4°
C1C2C3109.7°109.5°
C1C2H21112.1°109.5°
C1C2H22112.1°109.5°
H11C1H1295.5°109.5°
C3C2H21112.2°109.4°
C3C2H22112.2°109.4°
C2C3C4107.9°109.5°
C2C3H31112.8°109.5°
C2C3H32112.8°109.5°
H21C2H2298.2°109.5°
C4C3H31112.8°109.5°
C4C3H32112.8°109.4°
C3C4C5113.2°109.5°
C3C4H41110.8°109.5°
C3C4H42110.9°109.4°
H31C3H3297.7°109.4°
C5C4H41110.8°109.5°
C5C4H42110.9°109.4°
C4C5H51113.2°109.6°
C4C5H52110.9°109.4°
C4C5H53110.9°109.5°
H41C4H4299.5°109.5°
H51C5H52110.9°109.4°
H51C5H53110.8°109.5°
H52C5H5399.4°109.5°
C2'C1'H1'1112.5°109.5°
C2'C1'H1'2112.5°109.4°
C1'C2'C3'116.1°109.5°
C1'C2'H2'1109.8°109.5°
C1'C2'H2'2109.8°109.5°
H1'1C1'H1'297.9°109.5°
C3'C2'H2'1109.8°109.4°
C3'C2'H2'2109.8°109.4°
C2'C3'C4'104.8°109.5°
C2'C3'H3'1114.0°109.5°
C2'C3'H3'2114.0°109.5°
H2'1C2'H2'2100.4°109.5°
C4'C3'H3'1114.0°109.5°
C4'C3'H3'2114.0°109.4°
C3'C4'C5'108.9°109.5°
C3'C4'H4'1112.4°109.5°
C3'C4'H4'2112.4°109.4°
H3'1C3'H3'296.5°109.4°
C5'C4'H4'1112.4°109.5°
C5'C4'H4'2112.4°109.4°
C4'C5'H5'1108.9°109.6°
C4'C5'H5'2112.4°109.5°
C4'C5'H5'3112.4°109.4°
H4'1C4'H4'298.1°109.5°
H5'1C5'H5'2112.4°109.5°
H5'1C5'H5'3112.5°109.4°
H5'2C5'H5'398.0°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C1NC1'HN125.3°113.8°
NC1C2H11125.2°120.0°
NC1C2H12125.3°120.0°
NC1H11H12120.8°120.0°
NC1C2C3172.4°180.0°
NC1C2H2147.1°59.9°
NC1C2H2262.3°60.1°
C1NC1'C2'68.2°180.0°
C1NC1'H1'1166.6°60.0°
C1NC1'H1'257.1°60.0°
C1'NC1C2100.7°180.0°
C1'NC1H11134.1°60.0°
C1'NC1H1224.6°60.0°
NC1'C2'H1'1125.3°120.0°
NC1'C2'H1'2125.3°120.0°
NC1'H1'1H1'2118.5°120.0°
NC1'C2'C3'78.9°180.0°
NC1'C2'H2'1155.9°59.9°
NC1'C2'H2'246.4°60.1°
HNNC1C224.6°66.2°
HNNC1H11100.7°173.8°
HNNC1H12149.9°53.8°
HNNC1'C2'166.5°66.2°
HNNC1'H1'141.3°173.8°
HNNC1'H1'268.2°53.8°
C2C1H11H12120.9°120.0°
C1C2C3H21125.3°120.1°
C1C2C3H22125.3°120.0°
C1C2H21H22118.0°120.0°
C1C2C3C4156.2°180.0°
C1C2C3H3130.9°59.9°
C1C2C3H3278.5°60.0°
H11C1C2C362.4°60.0°
H11C1C2H21172.3°180.0°
H11C1C2H2262.9°60.0°
H12C1C2C347.1°60.0°
H12C1C2H2178.2°60.0°
H12C1C2H22172.4°180.0°
C3C2H21H22118.1°119.9°
C2C3C4H31125.3°120.1°
C2C3C4H32125.3°120.0°
C2C3H31H32118.7°120.0°
C2C3C4C560.0°180.0°
C2C3C4H4165.2°59.9°
C2C3C4H42174.7°60.0°
H21C2C3C478.5°59.9°
H21C2C3H31156.2°180.0°
H21C2C3H3246.7°60.1°
H22C2C3C430.9°60.0°
H22C2C3H3194.3°60.1°
H22C2C3H32156.2°180.0°
C4C3H31H32118.7°119.9°
C3C4C5H41125.3°120.1°
C3C4C5H42125.3°119.9°
C3C4H41H42116.7°119.9°
C3C4C5H51180.0°180.0°
C3C4C5H5254.7°60.0°
C3C4C5H5354.7°59.9°
H31C3C4C5174.7°59.9°
H31C3C4H4160.0°180.0°
H31C3C4H4249.4°60.0°
H32C3C4C565.2°60.1°
H32C3C4H41169.5°60.1°
H32C3C4H4260.1°180.0°
C5C4H41H42116.7°119.9°
C4C5H51H52125.4°119.9°
C4C5H51H53125.2°120.1°
C4C5H52H53116.7°119.9°
H41C4C5H5154.7°59.9°
H41C4C5H52179.9°60.1°
H41C4C5H5370.5°180.0°
H42C4C5H5154.7°60.1°
H42C4C5H5270.6°180.0°
H42C4C5H53180.0°60.1°
H51C5H52H53116.6°120.0°
C2'C1'H1'1H1'2118.4°120.0°
C1'C2'C3'H2'1125.2°120.1°
C1'C2'C3'H2'2125.3°120.0°
C1'C2'H2'1H2'2115.6°120.0°
C1'C2'C3'C4'168.0°180.0°
C1'C2'C3'H3'142.7°59.9°
C1'C2'C3'H3'266.7°60.0°
H1'1C1'C2'C3'46.4°60.0°
H1'1C1'C2'H2'178.8°180.0°
H1'1C1'C2'H2'2171.7°60.0°
H1'2C1'C2'C3'155.8°60.0°
H1'2C1'C2'H2'130.6°60.0°
H1'2C1'C2'H2'278.9°180.0°
C3'C2'H2'1H2'2115.6°119.9°
C2'C3'C4'H3'1125.3°120.1°
C2'C3'C4'H3'2125.3°120.0°
C2'C3'H3'1H3'2119.9°120.0°
C2'C3'C4'C5'173.2°180.0°
C2'C3'C4'H4'161.6°59.9°
C2'C3'C4'H4'248.0°60.0°
H2'1C2'C3'C4'66.8°59.9°
H2'1C2'C3'H3'1167.9°180.0°
H2'1C2'C3'H3'258.5°60.1°
H2'2C2'C3'C4'42.7°60.0°
H2'2C2'C3'H3'182.6°60.1°
H2'2C2'C3'H3'2168.0°180.0°
C4'C3'H3'1H3'2119.9°119.9°
C3'C4'C5'H4'1125.2°120.1°
C3'C4'C5'H4'2125.3°119.9°
C3'C4'H4'1H4'2118.4°119.9°
C3'C4'C5'H5'1180.0°180.0°
C3'C4'C5'H5'254.7°59.9°
C3'C4'C5'H5'354.7°60.0°
H3'1C3'C4'C5'47.9°59.9°
H3'1C3'C4'H4'1173.2°180.0°
H3'1C3'C4'H4'277.3°60.0°
H3'2C3'C4'C5'61.5°60.1°
H3'2C3'C4'H4'163.8°60.1°
H3'2C3'C4'H4'2173.3°180.0°
C5'C4'H4'1H4'2118.3°119.9°
C4'C5'H5'1H5'2125.3°120.1°
C4'C5'H5'1H5'3125.3°119.9°
C4'C5'H5'2H5'3118.3°119.9°
H4'1C4'C5'H5'154.8°59.9°
H4'1C4'C5'H5'2179.9°180.0°
H4'1C4'C5'H5'370.5°60.1°
H4'2C4'C5'H5'154.7°60.1°
H4'2C4'C5'H5'270.5°60.1°
H4'2C4'C5'H5'3179.9°180.0°
H5'1C5'H5'2H5'3118.4°120.0°

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PDB entries from 2026-02-04

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