Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

DIJ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OC8doub1.21Å1.20Å
C8C7sing1.51Å1.49Å
BRC2sing1.89Å1.90Å
C2C1doub1.38Å1.38ÅAromatic
C2C3sing1.38Å1.38ÅAromatic
C1Csing1.38Å1.38ÅAromatic
C3C4doub1.38Å1.38ÅAromatic
CC5doub1.38Å1.39ÅAromatic
C4C5sing1.38Å1.39ÅAromatic
C7C6sing1.53Å1.54Å
C5C6sing1.51Å1.52Å
C4H1sing1.08Å1.08Å
C6H2sing1.09Å1.10Å
C6H3sing1.09Å1.10Å
C7H4sing1.09Å1.10Å
C7H5sing1.09Å1.10Å
C8H6sing1.08Å1.08Å
C1H7sing1.08Å1.08Å
C3H8sing1.08Å1.08Å
CH9sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OC8C7125.9°120.0°
OC8H6117.0°120.1°
C8C7C6113.5°109.5°
C8C7H4108.5°109.5°
C8C7H5108.4°109.5°
C7C8H6117.1°119.9°
BRC2C1119.1°120.0°
BRC2C3119.3°120.0°
C1C2C3121.6°120.0°
C2C1C119.0°120.0°
C2C1H7120.5°120.0°
C2C3C4118.8°120.0°
C2C3H8120.6°120.0°
C1CC5121.1°120.0°
CC1H7120.5°120.1°
C1CH9119.5°119.9°
C3C4C5121.1°120.1°
C3C4H1119.4°120.0°
C4C3H8120.6°120.0°
CC5C4118.4°120.0°
CC5C6120.2°120.0°
C5CH9119.4°120.0°
C4C5C6121.4°120.0°
C5C4H1119.4°120.0°
C7C6C5111.7°109.5°
C7C6H2108.9°109.5°
C7C6H3108.9°109.5°
C6C7H4108.4°109.4°
C6C7H5108.5°109.5°
C5C6H2108.9°109.4°
C5C6H3108.9°109.5°
H2C6H3109.5°109.4°
H4C7H5109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OC8C7H6180.0°179.9°
OC8C7C693.8°125.0°
OC8C7H426.8°5.1°
OC8C7H5145.6°114.9°
C8C7C6H4120.6°119.9°
C8C7C6H5120.6°120.0°
C8C7C6C547.7°180.0°
C8C7C6H2168.0°60.0°
C8C7C6H372.6°60.0°
C8C7H4H5118.1°120.0°
BRC2C1C3179.7°179.2°
BRC2C1C179.5°180.0°
BRC2C3C4179.2°179.7°
BRC2C1H70.5°0.0°
BRC2C3H80.8°0.3°
C2C1CH7180.0°180.0°
C1C2C3C40.5°0.6°
C2C1CC50.7°0.6°
C1C2C3H8179.4°179.5°
C2C1CH9179.4°180.0°
C3C2C1C0.3°0.8°
C2C3C4H8180.0°179.9°
C2C3C4C50.1°0.0°
C2C3C4H1179.9°179.7°
C3C2C1H7179.8°179.2°
C1CC5H9180.0°179.4°
C1CC5C41.3°0.0°
C1CC5C6178.1°180.0°
C3C4C5C1.0°0.3°
C3C4C5H1180.0°179.7°
C3C4C5C6178.4°179.7°
CC5C4C6179.4°179.9°
CC5C6C7126.9°89.9°
CC5C4H1179.0°180.0°
CC5C6H2112.8°30.1°
CC5C6H36.5°150.0°
C5CC1H7179.3°179.5°
C4C5C6C753.8°90.0°
C4C5C6H266.6°150.0°
C4C5C6H3174.1°30.1°
C5C4C3H8179.9°180.0°
C4C5CH9178.8°179.4°
C7C6C5H2120.3°120.0°
C7C6C5H3120.3°120.1°
C7C6H2H3119.0°120.0°
C6C7H4H5118.2°120.0°
C6C7C8H686.2°55.0°
C6C5C4H11.6°0.0°
C5C6H2H3119.0°120.0°
C5C6C7H472.9°60.0°
C5C6C7H5168.3°60.0°
C6C5CH91.9°0.6°
H1C4C3H80.0°0.3°
H2C6C7H447.4°180.0°
H2C6C7H571.4°60.0°
H3C6C7H4166.8°60.0°
H3C6C7H547.9°180.0°
H4C7C8H6153.2°175.0°
H5C7C8H634.4°65.0°
H7C1CH90.7°0.1°

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon