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Summary Geometry Related PDB entries

DGN

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	1.47Å	1.39Å
N	H	sing	1.01Å	1.02Å
N	H2	sing	1.01Å	1.02Å
CA	C	sing	1.51Å	1.48Å
CA	CB	sing	1.53Å	1.47Å
CA	HA	sing	1.09Å	1.11Å
C	O	doub	1.21Å	1.25Å
C	OXT	sing	1.34Å	1.24Å
OXT	HXT	sing	0.97Å	0.95Å
CB	CG	sing	1.53Å	1.52Å
CB	HB2	sing	1.09Å	1.12Å
CB	HB3	sing	1.09Å	1.11Å
CG	CD	sing	1.51Å	1.45Å
CG	HG2	sing	1.09Å	1.11Å
CG	HG3	sing	1.09Å	1.11Å
CD	OE1	doub	1.21Å	1.25Å
CD	NE2	sing	1.35Å	1.36Å
NE2	HE21	sing	0.97Å	1.02Å
NE2	HE22	sing	0.97Å	1.02Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CA	N	H	109.1°	106.7°
CA	N	H2	112.3°	106.6°
N	CA	C	109.1°	109.4°
N	CA	CB	108.0°	109.5°
N	CA	HA	111.7°	109.4°
H	N	H2	112.4°	106.7°
C	CA	CB	112.3°	109.5°
C	CA	HA	107.3°	109.5°
CA	C	O	120.6°	120.1°
CA	C	OXT	119.7°	119.9°
CB	CA	HA	108.4°	109.4°
CA	CB	CG	110.3°	109.6°
CA	CB	HB2	111.9°	109.5°
CA	CB	HB3	111.9°	109.4°
O	C	OXT	119.7°	120.0°
C	OXT	HXT	119.7°	120.0°
CG	CB	HB2	111.9°	109.5°
CG	CB	HB3	112.0°	109.5°
CB	CG	CD	106.8°	109.6°
CB	CG	HG2	113.2°	109.5°
CB	CG	HG3	113.2°	109.5°
HB2	CB	HB3	98.5°	109.4°
CD	CG	HG2	113.2°	109.5°
CD	CG	HG3	113.2°	109.4°
CG	CD	OE1	119.2°	120.0°
CG	CD	NE2	113.7°	120.1°
HG2	CG	HG3	97.3°	109.4°
OE1	CD	NE2	127.0°	119.9°
CD	NE2	HE21	127.0°	120.1°
CD	NE2	HE22	113.7°	119.9°
HE21	NE2	HE22	119.3°	119.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CA	N	H	H2	125.3°	113.7°
N	CA	C	CB	119.7°	120.0°
N	CA	C	HA	121.2°	120.0°
N	CA	CB	HA	121.2°	119.9°
N	CA	C	O	178.5°	30.0°
N	CA	C	OXT	2.3°	150.0°
N	CA	CB	CG	53.6°	59.9°
N	CA	CB	HB2	178.9°	180.0°
N	CA	CB	HB3	71.7°	60.1°
H	N	CA	C	180.0°	53.8°
H	N	CA	CB	57.6°	173.8°
H	N	CA	HA	61.5°	66.3°
H2	N	CA	C	54.7°	60.0°
H2	N	CA	CB	177.1°	60.0°
H2	N	CA	HA	63.8°	180.0°
C	CA	CB	HA	118.4°	120.1°
CA	C	O	OXT	179.2°	180.0°
CA	C	OXT	HXT	180.0°	180.0°
C	CA	CB	CG	174.0°	179.9°
C	CA	CB	HB2	60.7°	60.0°
C	CA	CB	HB3	48.7°	59.9°
CB	CA	C	O	58.7°	90.0°
CB	CA	C	OXT	122.0°	90.0°
CA	CB	CG	HB2	125.3°	120.1°
CA	CB	CG	HB3	125.3°	120.0°
CA	CB	HB2	HB3	117.8°	119.9°
CA	CB	CG	CD	179.2°	180.0°
CA	CB	CG	HG2	53.9°	59.9°
CA	CB	CG	HG3	55.6°	60.0°
HA	CA	C	O	60.3°	149.9°
HA	CA	C	OXT	118.9°	30.0°
HA	CA	CB	CG	67.6°	60.0°
HA	CA	CB	HB2	57.7°	60.1°
HA	CA	CB	HB3	167.1°	180.0°
O	C	OXT	HXT	0.8°	0.1°
CG	CB	HB2	HB3	117.9°	119.9°
CB	CG	CD	HG2	125.2°	120.1°
CB	CG	CD	HG3	125.2°	120.0°
CB	CG	HG2	HG3	119.1°	120.0°
CB	CG	CD	OE1	14.3°	0.1°
CB	CG	CD	NE2	166.1°	180.0°
HB2	CB	CG	CD	55.6°	59.9°
HB2	CB	CG	HG2	179.2°	179.9°
HB2	CB	CG	HG3	69.7°	60.1°
HB3	CB	CG	CD	53.9°	60.0°
HB3	CB	CG	HG2	71.3°	60.1°
HB3	CB	CG	HG3	179.2°	180.0°
CD	CG	HG2	HG3	119.2°	119.9°
CG	CD	OE1	NE2	179.5°	179.9°
CG	CD	NE2	HE21	0.4°	179.9°
CG	CD	NE2	HE22	180.0°	0.0°
HG2	CG	CD	OE1	111.0°	120.0°
HG2	CG	CD	NE2	68.6°	59.9°
HG3	CG	CD	OE1	139.5°	120.1°
HG3	CG	CD	NE2	40.9°	60.0°
OE1	CD	NE2	HE21	180.0°	0.0°
OE1	CD	NE2	HE22	0.4°	179.9°
CD	NE2	HE21	HE22	179.5°	179.9°

249697

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