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Summary Geometry Related PDB entries

DGL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	1.47Å	1.46Å
N	H	sing	1.01Å	1.00Å
N	H2	sing	1.01Å	1.00Å
CA	C	sing	1.51Å	1.52Å
CA	CB	sing	1.53Å	1.54Å
CA	HA	sing	1.09Å	1.10Å
C	O	doub	1.21Å	1.23Å
C	OXT	sing	1.34Å	1.33Å
CB	CG	sing	1.53Å	1.54Å
CB	HB2	sing	1.09Å	1.10Å
CB	HB3	sing	1.09Å	1.10Å
CG	CD	sing	1.51Å	1.53Å
CG	HG2	sing	1.09Å	1.10Å
CG	HG3	sing	1.09Å	1.10Å
CD	OE1	doub	1.21Å	1.24Å
CD	OE2	sing	1.34Å	1.25Å
OE2	HE2	sing	0.97Å	0.95Å
OXT	HXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CA	N	H	109.5°	111.1°
CA	N	H2	109.5°	111.0°
N	CA	C	113.5°	109.5°
N	CA	CB	109.4°	109.5°
N	CA	HA	106.9°	109.5°
H	N	H2	109.5°	111.0°
C	CA	CB	109.9°	109.5°
C	CA	HA	106.3°	109.4°
CA	C	O	121.1°	120.0°
CA	C	OXT	116.2°	120.0°
CB	CA	HA	110.7°	109.5°
CA	CB	CG	115.1°	109.4°
CA	CB	HB2	107.6°	109.5°
CA	CB	HB3	107.7°	109.5°
O	C	OXT	122.7°	120.0°
C	OXT	HXT	109.5°	117.0°
CG	CB	HB2	107.6°	109.5°
CG	CB	HB3	107.6°	109.5°
CB	CG	CD	114.8°	109.5°
CB	CG	HG2	107.7°	109.5°
CB	CG	HG3	107.7°	109.5°
HB2	CB	HB3	111.3°	109.5°
CD	CG	HG2	107.8°	109.5°
CD	CG	HG3	107.7°	109.5°
CG	CD	OE1	120.2°	120.0°
CG	CD	OE2	118.3°	120.0°
HG2	CG	HG3	111.1°	109.5°
OE1	CD	OE2	121.5°	120.1°
CD	OE2	HE2	109.5°	116.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CA	N	H	H2	120.0°	123.9°
N	CA	C	CB	122.8°	120.0°
N	CA	C	HA	117.3°	120.0°
N	CA	CB	HA	117.6°	120.1°
N	CA	C	O	131.4°	20.0°
N	CA	C	OXT	47.7°	160.0°
N	CA	CB	CG	67.3°	65.0°
N	CA	CB	HB2	172.7°	175.0°
N	CA	CB	HB3	52.7°	55.0°
H	N	CA	C	180.0°	60.0°
H	N	CA	CB	56.9°	60.0°
H	N	CA	HA	63.1°	179.9°
H2	N	CA	C	60.0°	64.0°
H2	N	CA	CB	63.1°	176.0°
H2	N	CA	HA	176.9°	56.0°
C	CA	CB	HA	117.2°	120.0°
CA	C	O	OXT	179.0°	180.0°
C	CA	CB	CG	167.4°	175.0°
C	CA	CB	HB2	47.5°	55.0°
C	CA	CB	HB3	72.6°	65.0°
CA	C	OXT	HXT	179.1°	180.0°
CB	CA	C	O	105.8°	100.0°
CB	CA	C	OXT	75.2°	80.0°
CA	CB	CG	HB2	120.0°	120.0°
CA	CB	CG	HB3	120.0°	120.0°
CA	CB	HB2	HB3	117.7°	120.0°
CA	CB	CG	CD	80.5°	180.0°
CA	CB	CG	HG2	39.5°	60.0°
CA	CB	CG	HG3	159.5°	60.0°
HA	CA	C	O	14.1°	140.0°
HA	CA	C	OXT	165.0°	40.0°
HA	CA	CB	CG	50.2°	55.0°
HA	CA	CB	HB2	69.7°	64.9°
HA	CA	CB	HB3	170.2°	175.0°
O	C	OXT	HXT	0.0°	0.0°
CG	CB	HB2	HB3	117.7°	120.0°
CB	CG	CD	HG2	120.0°	120.0°
CB	CG	CD	HG3	120.0°	120.0°
CB	CG	HG2	HG3	117.8°	120.0°
CB	CG	CD	OE1	3.9°	0.0°
CB	CG	CD	OE2	175.9°	180.0°
HB2	CB	CG	CD	159.5°	60.0°
HB2	CB	CG	HG2	80.5°	180.0°
HB2	CB	CG	HG3	39.5°	60.0°
HB3	CB	CG	CD	39.5°	60.0°
HB3	CB	CG	HG2	159.5°	60.0°
HB3	CB	CG	HG3	80.5°	NaN°
CD	CG	HG2	HG3	117.8°	120.0°
CG	CD	OE1	OE2	179.8°	180.0°
CG	CD	OE2	HE2	179.8°	180.0°
HG2	CG	CD	OE1	116.1°	120.0°
HG2	CG	CD	OE2	64.1°	60.0°
HG3	CG	CD	OE1	123.9°	120.0°
HG3	CG	CD	OE2	55.9°	60.0°
OE1	CD	OE2	HE2	0.0°	0.0°

246704

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