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Summary Geometry Related PDB entries

Obsolete: DGC

DGC was replaced with GCD on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.49Å
C1	O5	sing	1.43Å	1.53Å
C1	O1	sing	1.43Å	1.41Å
C1	H1	sing	1.09Å	1.10Å
C2	O2	sing	1.43Å	1.47Å
C2	C3	sing	1.53Å	1.58Å
C2	H2	sing	1.09Å	1.10Å
O2	HB	sing	0.97Å	0.95Å
C3	O3	sing	1.43Å	1.43Å
C3	C4	sing	1.50Å	1.54Å
C3	H3	sing	1.09Å	1.10Å
O3	HC	sing	0.97Å	0.95Å
C4	C5	doub	1.33Å	1.36Å
C4	H4	sing	1.08Å	1.08Å
C5	O5	sing	1.35Å	1.52Å
C5	C6	sing	1.47Å	1.51Å
C6	O6A	sing	1.35Å	1.29Å
C6	O6B	doub	1.21Å	1.28Å
O6A	H6A	sing	0.97Å	0.95Å
O1	HA	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	O5	105.8°	108.3°
C2	C1	O1	111.1°	109.7°
C2	C1	H1	110.9°	109.7°
C1	C2	O2	109.0°	109.7°
C1	C2	C3	106.4°	108.3°
C1	C2	H2	111.3°	109.7°
O5	C1	O1	106.4°	109.7°
O5	C1	H1	110.3°	109.6°
C1	O5	C5	115.5°	117.6°
O1	C1	H1	112.2°	109.7°
C1	O1	HA	109.5°	113.9°
O2	C2	C3	108.4°	109.7°
O2	C2	H2	111.6°	109.7°
C2	O2	HB	109.5°	114.0°
C3	C2	H2	110.0°	109.7°
C2	C3	O3	104.1°	109.5°
C2	C3	C4	119.2°	109.4°
C2	C3	H3	103.4°	109.5°
O3	C3	C4	119.4°	109.5°
O3	C3	H3	104.9°	109.5°
C3	O3	HC	109.5°	114.0°
C4	C3	H3	103.8°	109.5°
C3	C4	C5	118.4°	122.3°
C3	C4	H4	120.8°	118.9°
C5	C4	H4	120.8°	118.8°
C4	C5	O5	118.8°	123.0°
C4	C5	C6	124.7°	118.5°
O5	C5	C6	116.5°	118.5°
C5	C6	O6A	117.3°	120.0°
C5	C6	O6B	111.6°	120.1°
O6A	C6	O6B	131.1°	120.0°
C6	O6A	H6A	109.5°	117.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	O5	O1	118.2°	119.7°
C2	C1	O5	H1	119.9°	119.7°
C2	C1	O1	H1	124.7°	120.6°
C1	C2	O2	C3	115.4°	118.8°
C1	C2	O2	H2	123.3°	120.6°
C1	C2	C3	H2	120.7°	119.7°
C1	C2	O2	HB	180.0°	60.0°
C1	C2	C3	O3	175.0°	167.2°
C1	C2	C3	C4	38.9°	47.2°
C1	C2	C3	H3	75.5°	72.8°
C2	C1	O5	C5	62.2°	47.9°
C2	C1	O1	HA	180.0°	180.0°
O5	C1	O1	H1	120.7°	120.5°
O5	C1	C2	O2	179.8°	177.4°
O5	C1	C2	C3	63.5°	63.0°
O5	C1	C2	H2	56.4°	56.8°
C1	O5	C5	C4	27.2°	16.7°
C1	O5	C5	C6	151.3°	163.4°
O5	C1	O1	HA	65.4°	61.2°
O1	C1	C2	O2	64.8°	57.6°
O1	C1	C2	C3	178.5°	177.3°
O1	C1	C2	H2	58.6°	63.0°
O1	C1	O5	C5	179.6°	167.6°
H1	C1	C2	O2	60.6°	63.0°
H1	C1	C2	C3	56.1°	56.7°
H1	C1	C2	H2	176.0°	176.4°
H1	C1	O5	C5	57.7°	71.8°
H1	C1	O1	HA	55.3°	59.4°
O2	C2	C3	H2	122.3°	120.6°
O2	C2	C3	O3	67.9°	73.2°
O2	C2	C3	C4	156.0°	166.9°
O2	C2	C3	H3	41.6°	46.9°
C3	C2	O2	HB	64.5°	178.7°
C2	C3	O3	C4	136.0°	119.9°
C2	C3	O3	H3	108.4°	120.0°
C2	C3	C4	H3	114.2°	120.0°
C2	C3	O3	HC	180.0°	180.0°
C2	C3	C4	C5	4.5°	17.6°
C2	C3	C4	H4	175.4°	162.4°
H2	C2	O2	HB	56.8°	60.6°
H2	C2	C3	O3	54.3°	47.4°
H2	C2	C3	C4	81.8°	72.5°
H2	C2	C3	H3	163.8°	167.5°
O3	C3	C4	H3	116.3°	120.1°
O3	C3	C4	C5	134.0°	137.6°
O3	C3	C4	H4	46.0°	42.5°
C4	C3	O3	HC	44.0°	60.1°
C3	C4	C5	H4	180.0°	179.9°
C3	C4	C5	O5	1.9°	0.5°
C3	C4	C5	C6	179.7°	179.6°
H3	C3	O3	HC	71.7°	60.0°
H3	C3	C4	C5	109.7°	102.4°
H3	C3	C4	H4	70.3°	77.6°
C4	C5	O5	C6	178.5°	179.9°
C4	C5	C6	O6A	9.5°	180.0°
C4	C5	C6	O6B	170.6°	0.1°
H4	C4	C5	O5	178.2°	179.6°
H4	C4	C5	C6	0.3°	0.4°
O5	C5	C6	O6A	169.0°	0.1°
O5	C5	C6	O6B	10.9°	180.0°
C5	C6	O6A	O6B	179.9°	180.0°
C5	C6	O6A	H6A	179.9°	180.0°
O6B	C6	O6A	H6A	0.0°	0.0°

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PDB entries from 2024-10-09

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